rna27, rna27 (mRNA) Nannochloropsis gaditana

Overview
Namerna27
Unique Namerna27
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1469
Alignment locationCM002455.1:89233..90273 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101463g3.4141.mrna
Orig protein idgnl|cribi|Naga_101463g3.4141
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:89233..90273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101463g3gene25Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna27rna27-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30645.1cds27Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna27 ID=rna27|Name=rna27|organism=Nannochloropsis gaditana|type=mRNA|length=1469bp
TCATTTTTCGTCGGACTCCGATGTTTTACGCAGCTTATCCCCAACGGGCA
CCACAGGGATCGATAGGAGGAGCAGCCTCGCCCGCGGATCGACGGAGGGG
GGATGAGAAACATTGGAAATATTTTAATGCCCTTTGATGAGCCTTTAAAA
TCCACCTTTGTGCCCCATATGGATACACAATTACAGACCATACCACCGTC
GTGGAGTTCTGCTGTTGGTTTGGTTTCATTGAGTATAAATATGAGGACCA
ACGCCTTGAGAGCAGCGGGCTACAAGCATGGAGACCGGAGGCCAAAAGTG
TTCAGCTCTGTGCTCTCCCTCCTCTTTTTTGCCAGCGTCGCCACCGCGGT
AGCTCACAATCTACCTGTCGCGTGTAGATGGATGCGAGGAGTGACGATAA
ATAGAGAAGCTACGAAAGAAATCCTTCCTTTCATGTCACGACGTGAGGGG
GTGAGCTTGGCACTCTGCAGCCTTATCCGCAGCAGAGGAGGGGCGAGAGC
TGCGTCTGCAGCTAAGGATAAGCATCGGCTACATAACGATAGGGCAAACG
ACAATGTGGTTGAGGAGGAAAAGGCTGAAAATGAAGAGGAGGAAGAGGAG
GAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGAGGAAGACGC
GGAGGAGGATGAGGATGATTATGATGAAGAAGGGGTAACTGAAGAAGATT
TTAATGACGGATCCTTCGCGTCGAAATTGAAGAAGGAGTACAGGCGGACG
CCGCCTGTGACCAAAGCGTATCTGATGGCATCTCTGAGCGTGACGACCGC
AGCCATGCTCTTCAATAAGAACCAGTGGCCCGAATGGTTGCTCTTGGACT
GGGCAAAAGTGGTAGGCCGCCTGCAGATCTGGCGTCCATTCACTTCCTTC
CTGTATTTCGGAAGCTTTGGCTTCAACTATCTCCTATCCGCCCACTTTAT
GTGGACTTACATGGCCCACTTGGAGAAGCTCAAGTGTAAAAATCCGGCCG
ATTTCGTCACCATGGTGCTCTTTGGCGTCAGTTTCCTCCTTGTCGGCAGT
CCATTGATGGGGTTTCAACCTCATTTTCTCGGGCACAACCTAAGCTGCTA
TCTCGTCTACGTATGGAGCCGCATGTTTGAGGGGCAGGATGTTGACGTCA
TGGGCCTCTTCCATCTCCCTGCCCACGTATTGCCGTGGTTCTTCGTTGCT
CAGACGGTTGTGCTTGAACAAGAACTTCCATTATCCGATCTGCTGGGTAT
AGCTGTAGGACATTTATATCACTACGCCAGTACCAGAAAATTGGTCAAGC
CTCCAGCTTTCTTGAGAGTTTTTTTCGCACAAAAGCACTTTCGAAAACTG
TACCGGAGTTTCGAGGACGATTTGCATTGAAATAATCAAAAATAAGACGC
AAAAAGTAAAAAGCATCGCTGAACTATAGTTTTCAGAGGACAATGTAATA
CTTACCTATACGGCTGCCT
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protein sequence of rna27

>rna27-protein ID=rna27-protein|Name=rna27|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MEDSPGHQDGESSGLRDSSQPVCTFKKPVFKKKGAKQQNKRARKQASDSG
SGSSSEEAEESVLLRKQQSNNTRGVISTTATKSSVLHTYASTGTASPLAV
AGGATYTSEIDTEHDRDNRAMMEMALRAQQEEEDASGAGGEKIYRGQVRR
EGGREVGREVGREGEREGGREGG
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mRNA from alignment at CM002455.1:89233..90273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna27 ID=rna27|Name=rna27|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp|location=Sequence derived from alignment at CM002455.1:89233..90273- (Nannochloropsis gaditana)
AACGGGTAATTTACAGGTAGTGTCCATATTGATGGAAGACAGTCCAGGAC
ACCAAGATGGCGAAAGTAGTGGCCTAAGGGACTCTTCACAGCCAGGTATA
GCGGTATCCCGTGGAGGGTGTGTGCGACGAGCAAGCCTACAGCGCGTCAA
TTCTGTTTCGAATTTTACCACGCTACGCCCGACTGACATCGTTGTGTACC
TTTTTTGATCTTTGTGCTTGCAGTTTGCACCTTCAAAAAGCCAGTTTTCA
AGAAAAAAGGAGCAAAACAACAAAACAAACGGGCCCGCAAGCAAGCATCA
GACTCGGGATCTGGAAGGTGAGGTTGCAAACGAGTAACGTCAAAGGAAAA
AATGCGAAATTACCGGGAAAACTTGTAGTCTTTGCATACTCATTCCACCA
ATAACATGGCACGTTTGACCACTCGCACAGTCGTCTGAATATGTCCATAC
CCCCACATACTCCCACACGCTCGCATACGACAGCTCGAGCGAGGAAGCGG
AGGAATCAGTCTTACTCCGAAAACAACAGAGCAATAATACGCGAGGCGTC
ATCTCTACTACTGCAACCAAGTCCAGGTAATTTCTTGGTCAACTTTCCTT
CCCTTCTCTCCTTTCCTCCCGCCCTCGCTCCTCCCCTTCCTCCCCCTCTC
CCTCCCTCCCTCCCTCCTGCCAGGCCAAGGCTCACCTTCCCTCCGCTTCC
CATAGCCTCCATTCCACTCGATATAATGCCCCATCGATCATTCCTTCCCA
ATTCTTCCAATTCTTTCCCCTAGCGTCCTTCACACGTATGCTTCCACCGG
GACCGCCTCCCCACTGGCTGTCGCGGGAGGAGCCACCTATACAAGTGAGA
TCGACACCGAGCACGACCGGGACAACCGGGCGATGATGGAAATGGCCCTA
CGCGCTCAGCAGGAGGAGGAGGACGCGTCGGGGGCGGGTGGGGAGAAAAT
TTATCGCGGACAGGTGAGGAGGGAGGGAGGGAGGGAGGTTGGGAGGGAGG
TTGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGA
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Coding sequence (CDS) from alignment at CM002455.1:89233..90273-

>rna27 ID=rna27|Name=rna27|organism=Nannochloropsis gaditana|type=CDS|length=2076bp|location=Sequence derived from alignment at CM002455.1:89233..90273- (Nannochloropsis gaditana)
CGTCCTTCACACGTATGCTTCCACCGGGACCGCCTCCCCACTGGCTGTCG
CGGGAGGAGCCACCTATACAAGTGAGATCGACACCGAGCACGACCGGGAC
AACCGGGCGATGATGGAAATGGCCCTACGCGCTCAGCAGGAGGAGGAGGA
CGCGTCGGGGGCGGGTGGGGAGAAAATTTATCGCGGACAGGTGAGGAGGG
AGGGAGGGAGGGAGGTTGGGAGGGAGGTTGGGAGGGAGGGAGAGAGGGAG
GGAGGGAGGGAGGGAGGACTCGAGCGAGGAAGCGGAGGAATCAGTCTTAC
TCCGAAAACAACAGAGCAATAATACGCGAGGCGTCATCTCTACTACTGCA
ACCAAGTCCAGTTTGCACCTTCAAAAAGCCAGTTTTCAAGAAAAAAGGAG
CAAAACAACAAAACAAACGGGCCCGCAAGCAAGCATCAGACTCGGGATCT
GGAAGATGGAAGACAGTCCAGGACACCAAGATGGCGAAAGTAGTGGCCTA
AGGGACTCTTCACAGCCAGCGTCCTTCACACGTATGCTTCCACCGGGACC
GCCTCCCCACTGGCTGTCGCGGGAGGAGCCACCTATACAAGTGAGATCGA
CACCGAGCACGACCGGGACAACCGGGCGATGATGGAAATGGCCCTACGCG
CTCAGCAGGAGGAGGAGGACGCGTCGGGGGCGGGTGGGGAGAAAATTTAT
CGCGGACAGGTGAGGAGGGAGGGAGGGAGGGAGGTTGGGAGGGAGGTTGG
GAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGACTCGAGCGAGGAA
GCGGAGGAATCAGTCTTACTCCGAAAACAACAGAGCAATAATACGCGAGG
CGTCATCTCTACTACTGCAACCAAGTCCAGTTTGCACCTTCAAAAAGCCA
GTTTTCAAGAAAAAAGGAGCAAAACAACAAAACAAACGGGCCCGCAAGCA
AGCATCAGACTCGGGATCTGGAAGATGGAAGACAGTCCAGGACACCAAGA
TGGCGAAAGTAGTGGCCTAAGGGACTCTTCACAGCCAGCGTCCTTCACAC
GTATGCTTCCACCGGGACCGCCTCCCCACTGGCTGTCGCGGGAGGAGCCA
CCTATACAAGTGAGATCGACACCGAGCACGACCGGGACAACCGGGCGATG
ATGGAAATGGCCCTACGCGCTCAGCAGGAGGAGGAGGACGCGTCGGGGGC
GGGTGGGGAGAAAATTTATCGCGGACAGGTGAGGAGGGAGGGAGGGAGGG
AGGTTGGGAGGGAGGTTGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAG
GGAGGACTCGAGCGAGGAAGCGGAGGAATCAGTCTTACTCCGAAAACAAC
AGAGCAATAATACGCGAGGCGTCATCTCTACTACTGCAACCAAGTCCAGT
TTGCACCTTCAAAAAGCCAGTTTTCAAGAAAAAAGGAGCAAAACAACAAA
ACAAACGGGCCCGCAAGCAAGCATCAGACTCGGGATCTGGAAGATGGAAG
ACAGTCCAGGACACCAAGATGGCGAAAGTAGTGGCCTAAGGGACTCTTCA
CAGCCAGCGTCCTTCACACGTATGCTTCCACCGGGACCGCCTCCCCACTG
GCTGTCGCGGGAGGAGCCACCTATACAAGTGAGATCGACACCGAGCACGA
CCGGGACAACCGGGCGATGATGGAAATGGCCCTACGCGCTCAGCAGGAGG
AGGAGGACGCGTCGGGGGCGGGTGGGGAGAAAATTTATCGCGGACAGGTG
AGGAGGGAGGGAGGGAGGGAGGTTGGGAGGGAGGTTGGGAGGGAGGGAGA
GAGGGAGGGAGGGAGGGAGGGAGGACTCGAGCGAGGAAGCGGAGGAATCA
GTCTTACTCCGAAAACAACAGAGCAATAATACGCGAGGCGTCATCTCTAC
TACTGCAACCAAGTCCAGTTTGCACCTTCAAAAAGCCAGTTTTCAAGAAA
AAAGGAGCAAAACAACAAAACAAACGGGCCCGCAAGCAAGCATCAGACTC
GGGATCTGGAAGATGGAAGACAGTCCAGGACACCAAGATGGCGAAAGTAG
TGGCCTAAGGGACTCTTCACAGCCAG
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Synonyms
Publications