EWM30645.1, cds27 (CDS) Nannochloropsis gaditana

Overview
NameEWM30645.1
Unique Namecds27
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:90179..90242 -
Alignment locationCM002455.1:89957..90050 -
Alignment locationCM002455.1:89698..89790 -
Alignment locationCM002455.1:89233..89500 -

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Properties
Property NameValue
Start range89233
Start range.
Protein idEWM30645.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101463g3.4141.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:90179..90242 -
CM002455.1supercontigCM002455.1:89957..90050 -
CM002455.1supercontigCM002455.1:89698..89790 -
CM002455.1supercontigCM002455.1:89233..89500 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30645.1 vs. NCBI_GenBank
Match: gi|585113335|gb|EWM30645.1| (hypothetical protein Naga_101463g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 347.436 bits (890), Expect = 5.143e-121
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MEDSPGHQDGESSGLRDSSQPVCTFKKPVFKKKGAKQQNKRARKQASDSGSGSSSEEAEESVLLRKQQSNNTRGVISTTATKSSVLHTYASTGTASPLAVAGGATYTSEIDTEHDRDNRAMMEMALRAQQEEEDASGAGGEKIYRGQVRREGGREVGREVGREGEREGGREGG 173
            MEDSPGHQDGESSGLRDSSQPVCTFKKPVFKKKGAKQQNKRARKQASDSGSGSSSEEAEESVLLRKQQSNNTRGVISTTATKSSVLHTYASTGTASPLAVAGGATYTSEIDTEHDRDNRAMMEMALRAQQEEEDASGAGGEKIYRGQVRREGGREVGREVGREGEREGGREGG
Sbjct:    1 MEDSPGHQDGESSGLRDSSQPVCTFKKPVFKKKGAKQQNKRARKQASDSGSGSSSEEAEESVLLRKQQSNNTRGVISTTATKSSVLHTYASTGTASPLAVAGGATYTSEIDTEHDRDNRAMMEMALRAQQEEEDASGAGGEKIYRGQVRREGGREVGREVGREGEREGGREGG 173          
BLAST of EWM30645.1 vs. NCBI_GenBank
Match: gi|1153712101|ref|XP_020277889.1| (RING finger protein 113A [Pseudomyrmex gracilis])

HSP 1 Score: 60.077 bits (144), Expect = 1.550e-7
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   20 QP--VCTFKKPVFKKKGAKQQNKRARKQASDSGSGSSSEEAEESVLLRKQQSNNTRG-VISTTATK---------------SSVLHTYASTGTASPLAVAG-GATYTSEIDTEHDRDNRAMMEMALRAQQEEEDASGAGGEKIYRG 146
            QP   CTF   +FKK+  K ++ R RK+AS  GS  SSE+  E+ ++RKQ+  + R  +I +T+TK                SV  +Y S  TA P+  +  GAT   E +TE DRD +A+ E   +AQ+  E+  G   +KIYRG
Sbjct:    7 QPEKTCTF---LFKKR--KIRSTRQRKEAS--GSNDSSED--ETTVVRKQKKRDNRNPMIQSTSTKEYQEKTNHSDDSSEEDSVTVSYKSNRTALPVGPSDQGATAVLETETEKDRDAQALFE---KAQKINEELEGKEDDKIYRG 140          
The following BLAST results are available for this feature:
BLAST of EWM30645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113335|gb|EWM30645.1|5.143e-121100.00hypothetical protein Naga_101463g3, partial [Nanno... [more]
gi|1153712101|ref|XP_020277889.1|1.550e-737.67RING finger protein 113A [Pseudomyrmex gracilis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna27rna27Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications