rna2696, rna2696 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2696
Unique Name	rna2696
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2568
Alignment location	CM002459.1:990385..992103 -

Link to JBrowse

Properties


Property Name	Value
Product	Ribonuclease Zc3h12a-like protein
Orig transcript id	gnl\|cribi\|Naga_100008g67.7842.mrna
Orig protein id	gnl\|cribi\|Naga_100008g67.7842
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:990385..992103 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g67	gene2579	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27950.1	cds2688	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2696	rna2696-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:990385..992103-
coding sequence from alignment at CM002459.1:990385..992103-

mRNA sequence

>rna2696 ID=rna2696|Name=rna2696|organism=Nannochloropsis gaditana|type=mRNA|length=2568bp
ATGACATCCTCCACAACGAGGATAAAAGTATTGCGGCGACGGCCTTCCGG
AGGTGGATCGATGTGCAGAGCATTGCCCCTTCTCCGCGCGGTAGTAGGTT
ATGTCACCCTCCTCTGCCTTCTGCTCGAGCCTTCCTCCGTCGCGGCATTC
GCCCCACGCGGCCTCTCTTCCCAACGATGTCGCACGGCAGTTCCTGTAGG
TAGTGGTACTTCCCAAGACATGGTGATTGCGTCTTCCGTTGCCACGACTG
CGTCTTCTTCGACTGGGGCAGATCCTCCTCGCGGTATGAAAGCCCGCCTC
CCCGAACATACCCTCCCTCCTTCCAGCAGGTTGGCCGCAAAAAAATCCCG
TCGTCCCAAGCTGCCCACTATGTATGGCCTATGGGATCTAGTCGTGGGTC
CGGTCGCGGCTGACTTCAAGCTCGTGGGCATGCCCTCCGAACTAACAGCT
CTCGCCATCGAGGTTCATAAGGCCACCGATCATCTCACCCGCCCCGCCCG
TTTGGCTGTGCTGCAGGCGCTGGTCCGGTCTTACCACGCGTATCGCTTTC
ACAAACCTTGTCAAATCACGTTGGATGAGACGGGCCGACGCCCCTCCACC
ACCACTGCACCACAAAGGGCGGTGGCCAAAGCCCTGACAGTGGGAGCCTA
CATGGAGCAGAACGTCGCAGTAGCCCGTTTGTTAGGAGCCTCGGAAGTGG
ACGGCGACACGATGGTCGCGGCACTCCTGTGCCACTCCCCCTTGACCCTA
GAGGCGGTGGAGAACGAGTTTGGAAAGGCGGTGGGCACCATCTTGGCCGG
GTGGAAGGCGATGCTGGGGGTGGAGGGCCAGCTGGAAATCAAGAGCCTCA
TCCACGAGTACGCGCATTTCCTCTGGGGCGGGCAGGGGGATAATCTGCGC
AATTTGTTGCTAGTGGTGGCAAAGGATTGGCGCGCGGTAGCCCTGCGGGT
GGCGTGGAAGAAAGTGGAAATGGAGACGACCGTGTTTGGCGCCAAGAAGG
AGGAGATTGACGCGTGCTGGGCCTGTTTGAATGTGTATGCTTCCTTGGCA
GAGGCGGCCGGGATGTCGCAGATCAAAAATGCGTTGGAAGAGCGGGCTTT
CAAATTTCTGATGCCGCAGGAGCACCGGAAGGTGATGACTGCATTGGAGG
CAAAACGCGACCGTTATCAGAAGGTCCTGGGGCAGGCTCGGAAAGAGGTA
TTGCAAGCCCTGTTGGAAGACCCTGTGTTTATGAGCAACGTAGAAAGGGT
TGAGGTGCGAGGGCGTATCAAGAGCCCGTACAGCGTGTGGAAGAAGATGA
AGAGGAAAGGCATGCTGGTTGAGGAGGGAGAGGGGGGGGGAGAAGGAAGT
GGCATGGGCTTGGAGGGCGTGTACGACATGGTCGCTTTGCGGGTCGTTTG
CACCCCTTTGTATGCGGATAAGGAAGCGTCTTCTGCCTCCTCGGCGACCT
TGCCCGTGTCTCCGCCGACTCCCGCCACGCTGCAAGCGCGGGCAGACTTG
GACAAGCAGATGTGCGACTACGTCCTTCGGGAGGTGGTGCACAAACTCCG
GCCGCACTACAAAGGTCGGGTGAAGGACTACGTGGGCGAAGAGAACCGGA
AGGCCAACGGCTACCAGTCTCTGCACACCACCCTGGCCTACCGATTGCGG
GGCGAGACGACCCCCGTGGAGATTCAAATCCGGACGAGCGAGATGCACTC
CGTGGCCGAGCACGGGCTGGCCGCCCACTGTCTGTACAAGGGGGATCGAA
CCCTGGCGGAAGTGATCGAGAGGGGCCAGCAACAGGCGGAGCAGCAGATG
CAGGAAGAGGAGGACGCGATCGGCCCCCAACGCGGCTTTGCGGGCCCCGG
GGAATTCCTGACGTGGTGTCAGAAGATGCTGGACAAGAGTCATGTCATCG
TTTTTTCTCCCGATGGGAAGCTTTTGAAGCTCAACCGTGGAGCCACCCTC
CTAGATTTTGTCAAGGCTTCTTGCCTGCAGCCCAAGGCCGGAACGGCGCA
GGGGAAACGTGGCACCCGGAACAAGAGGGTTGAGGAGGGACGCGGGTGTG
GCCGCTTGCACCCTCAGGGACTCTGGAGAGACGATAGTGCCCACGAGGAG
CACGGGGGTTATCAGACTGTACCCGTTTCCCGTCGAAAGTCCAAGCGAAG
CACGCAAGGCATGCTTCTATTGAACGGCCAATCGGCGCCGGCTTTGGACC
CGCCCACGCATGTAAAGTCTGTGAATATTGCAAAAACGGGATCATCATGT
AAGATATCTGGCCCGTTTGTTGTAGGTCGCAGAAGGGCCAAATCGATATC
GAAAGCGCCACGGGACTTTTTTTTGTCAAAAAGAGGACCGTTTTGTACAC
GTAGATTGATATTGTTAGAGGGACAAAGGTTGAAGGTGTATAGAGTCAAG
TCCATCGACTTAAGGTCACTGAGAGGCTTGTGCAATGCGGCCTTGCGTAG
CGCAGACATGCTGTGCCTGGTTACGAGCGTGTATGTTGGTCCGTTACATT
ATGAAATAAGACCCCGGAATACCCATAGGTCCCGGAAAATCGCAGCTTCT
GTATTTGAATCAAAATAA

protein sequence of rna2696

>rna2696-protein ID=rna2696-protein|Name=rna2696|organism=Nannochloropsis gaditana|type=polypeptide|length=572bp
MALKRVYEAAPLNEDVGSKPSASVPPSQSILSESSSSPNAPPQDHNDGSL
RQTKRMKRLLASDPAAAERMDYRRRLGLARRDDDIPTALQLFADVQARDI
DIGSEGFNALIALLTTFERLEDADQVLTHMRRKHFSLTEATYVCIMRALA
LGGRQPEAAEDLLREMLAGGLRPRLRSYSPIIVGYAEQGKLENAFALYDK
MLAQDIEPTETELVALLRGCSGEGGGNVEVDNFYRTLADLQDLVLEPGEG
AWEAVAGWFEKRRERGDWAVGHDQAAKSGGRGKDRKAALPQTPSPEMSVR
RGVVVDEAGVCSGCGTVLESIQLSSEAADELMTKVEELVLADRAREAEWA
RFKAWLRGPGGGGRAPEFDTVIDGANVGYFQMNYAQAPPHVNYEQISWVV
EHFVGMGKKPLLVLHARHVDSRRVPPGYAALVQKWRERQLLLVVPYRNND
DWFWLFATVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQVHFSFG
GYEKGGGRSVQIQVPAVYSKCIQGPGNGKAAGGREDENWHLPRAGDDKWL
CVQVRRGGATHAQNDGGMTEKS

mRNA from alignment at CM002459.1:990385..992103-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2696 ID=rna2696|Name=rna2696|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp|location=Sequence derived from alignment at CM002459.1:990385..992103- (Nannochloropsis gaditana)
ATGGCCCTGAAACGGGTGTACGAGGCTGCGCCTTTAAACGAAGATGTAGG
GAGCAAGCCAAGCGCTTCTGTGCCTCCGTCTCAATCTATCTTGTCTGAGT
CAAGTTCTTCGCCGAATGCGCCCCCACAAGACCACAATGATGGAAGCCTC
AGACAGACCAAGCGAATGAAAAGGCTTCTTGCCTCCGACCCCGCGGCGGC
CGAAAGAATGGATTACCGCCGACGTTTGGGATTGGCCCGCCGGGACGACG
ACATACCTACAGCTCTCCAATTGTTTGCGGACGTACAGGCACGTGATATT
GATATTGGATCCGAGGGATTCAATGCCTTGATCGCGTTATTGACCACATT
TGAGCGGCTGGAGGACGCTGACCAAGTCCTCACTCACATGCGTCGGAAGC
ACTTTTCTTTGACGGAGGCTACTTACGTCTGTATAATGCGGGCCTTGGCG
CTGGGAGGCCGGCAACCTGAAGCAGCGGAGGATTTGTTGAGGGAGATGCT
GGCGGGAGGCTTACGTCCTCGATTACGATCCTATAGTCCTATTATTGTAG
GATACGCTGAACAGGGAAAGCTCGAGAATGCCTTCGCTTTGTACGACAAA
ATGCTGGCTCAGGACATTGAGCCAACGGAAACGGAACTTGTGGCCTTGTT
GCGGGGGTGTTCGGGGGAAGGAGGGGGAAACGTGGAGGTGGATAACTTTT
ATCGGACTTTGGCTGACCTGCAAGACTTGGTGCTGGAGCCGGGGGAGGGG
GCATGGGAGGCGGTGGCGGGATGGTTCGAGAAGCGAAGGGAGAGGGGTGA
CTGGGCGGTAGGACATGACCAGGCCGCAAAGAGCGGAGGAAGGGGGAAGG
ACCGAAAGGCCGCATTGCCACAAACCCCGAGCCCGGAAATGTCCGTGAGG
CGTGGAGTGGTCGTGGACGAGGCAGGGGTCTGCAGTGGTTGCGGGACGGT
GCTGGAATCCATCCAGCTTTCCTCGGAGGCTGCAGATGAATTGATGACCA
AGGTTGAAGAGCTTGTGCTCGCGGACCGGGCCCGAGAAGCGGAATGGGCG
CGTTTCAAGGCGTGGCTGCGGGGGCCGGGAGGGGGAGGGCGGGCACCGGA
ATTCGACACGGTGATCGATGGCGCCAACGTGGGCTATTTCCAGATGAATT
ACGCCCAAGCCCCTCCTCACGTGAACTACGAGCAGATTTCCTGGGTGGTG
GAGCACTTCGTGGGGATGGGAAAGAAACCTTTGCTGGTGCTGCATGCTCG
CCATGTGGACAGTCGAAGGGTCCCGCCGGGCTATGCTGCTTTGGTCCAGA
AATGGCGTGAGCGGCAGTTGTTGTTGGTGGTTCCATATCGCAACAATGAC
GACTGGTTCTGGCTATTTGCGACTGTGTTCAAAGGAGGCCGGACCCTTCT
GGTCACGAACGACGAGATGCGGGATCACCACTTCCAAATGCTCTCACAGC
GAACGTTTCTGCGCTGGAAGGAGAGGCACCAGGTGCACTTCTCATTCGGT
GGGTATGAGAAGGGTGGGGGGCGGAGCGTGCAAATACAGGTTCCGGCGGT
GTATTCCAAGTGTATCCAGGGGCCTGGGAACGGAAAGGCGGCGGGAGGAA
GGGAGGACGAAAATTGGCATTTGCCCAGAGCGGGCGATGACAAATGGTTG
TGTGTGCAAGTGCGACGGGGGGGAGCCACACACGCGCAAAACGATGGCGG
CATGACCGAGAAGAGTTAA

Coding sequence (CDS) from alignment at CM002459.1:990385..992103-

>rna2696 ID=rna2696|Name=rna2696|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at CM002459.1:990385..992103- (Nannochloropsis gaditana)
ATGGCCCTGAAACGGGTGTACGAGGCTGCGCCTTTAAACGAAGATGTAGG
GAGCAAGCCAAGCGCTTCTGTGCCTCCGTCTCAATCTATCTTGTCTGAGT
CAAGTTCTTCGCCGAATGCGCCCCCACAAGACCACAATGATGGAAGCCTC
AGACAGACCAAGCGAATGAAAAGGCTTCTTGCCTCCGACCCCGCGGCGGC
CGAAAGAATGGATTACCGCCGACGTTTGGGATTGGCCCGCCGGGACGACG
ACATACCTACAGCTCTCCAATTGTTTGCGGACGTACAGGCACGTGATATT
GATATTGGATCCGAGGGATTCAATGCCTTGATCGCGTTATTGACCACATT
TGAGCGGCTGGAGGACGCTGACCAAGTCCTCACTCACATGCGTCGGAAGC
ACTTTTCTTTGACGGAGGCTACTTACGTCTGTATAATGCGGGCCTTGGCG
CTGGGAGGCCGGCAACCTGAAGCAGCGGAGGATTTGTTGAGGGAGATGCT
GGCGGGAGGCTTACGTCCTCGATTACGATCCTATAGTCCTATTATTGTAG
GATACGCTGAACAGGGAAAGCTCGAGAATGCCTTCGCTTTGTACGACAAA
ATGCTGGCTCAGGACATTGAGCCAACGGAAACGGAACTTGTGGCCTTGTT
GCGGGGGTGTTCGGGGGAAGGAGGGGGAAACGTGGAGGTGGATAACTTTT
ATCGGACTTTGGCTGACCTGCAAGACTTGGTGCTGGAGCCGGGGGAGGGG
GCATGGGAGGCGGTGGCGGGATGGTTCGAGAAGCGAAGGGAGAGGGGTGA
CTGGGCGGTAGGACATGACCAGGCCGCAAAGAGCGGAGGAAGGGGGAAGG
ACCGAAAGGCCGCATTGCCACAAACCCCGAGCCCGGAAATGTCCGTGAGG
CGTGGAGTGGTCGTGGACGAGGCAGGGGTCTGCAGTGGTTGCGGGACGGT
GCTGGAATCCATCCAGCTTTCCTCGGAGGCTGCAGATGAATTGATGACCA
AGGTTGAAGAGCTTGTGCTCGCGGACCGGGCCCGAGAAGCGGAATGGGCG
CGTTTCAAGGCGTGGCTGCGGGGGCCGGGAGGGGGAGGGCGGGCACCGGA
ATTCGACACGGTGATCGATGGCGCCAACGTGGGCTATTTCCAGATGAATT
ACGCCCAAGCCCCTCCTCACGTGAACTACGAGCAGATTTCCTGGGTGGTG
GAGCACTTCGTGGGGATGGGAAAGAAACCTTTGCTGGTGCTGCATGCTCG
CCATGTGGACAGTCGAAGGGTCCCGCCGGGCTATGCTGCTTTGGTCCAGA
AATGGCGTGAGCGGCAGTTGTTGTTGGTGGTTCCATATCGCAACAATGAC
GACTGGTTCTGGCTATTTGCGACTGTGTTCAAAGGAGGCCGGACCCTTCT
GGTCACGAACGACGAGATGCGGGATCACCACTTCCAAATGCTCTCACAGC
GAACGTTTCTGCGCTGGAAGGAGAGGCACCAGGTGCACTTCTCATTCGGT
GGGTATGAGAAGGGTGGGGGGCGGAGCGTGCAAATACAGGTTCCGGCGGT
GTATTCCAAGTGTATCCAGGGGCCTGGGAACGGAAAGGCGGCGGGAGGAA
GGGAGGACGAAAATTGGCATTTGCCCAGAGCGGGCGATGACAAATGGTTG
TGTGTGCAAGTGCGACGGGGGGGAGCCACACACGCGCAAAACGATGGCGG
CATGACCGAGAAGAGTTAA

Synonyms

Publications