rna269, rna269 (mRNA) Nannochloropsis gaditana

Overview
Namerna269
Unique Namerna269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length696
Alignment locationCM002455.1:687207..689312 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100026g47.10620.mrna
Orig protein idgnl|cribi|Naga_100026g47.10620
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:687207..689312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g47gene258Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna269rna269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30366.1cds269Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna269 ID=rna269|Name=rna269|organism=Nannochloropsis gaditana|type=mRNA|length=696bp
ATGGAACGTTGCAGTGAAAGCAACTCATATTTGCCTTCTTTATTGATGCC
CATCGCATCCAGACAATCAGCACGCGTCATTATGAATCAGCCGTCCTGGT
CACAAGCATGTGAGGCTCAATTTTCTGGGATGACTTTGTCAAATCTTCTC
CAGAGCGACATTCGAAAACTAGATGGAGAACGTGTGCTACTGTCTAAGAT
GGAGGACGTCGCAGGGAAAGTTGCCGGAGCTTTCATTCTCCAGGTTGTGA
GCGTGCTTGACGTAACAAAGCCGAGCAGCAAACAACTGAGTGGCGACGGT
GGGCAGGGACGCGTCTTGATGTTGCGTGTCACAGATGGGTCAAAGAAGTA
TTCTGCCATCGAACTGGCTCGTATACCCAAGCTTAGCTTGGATACACCGC
CGGGGACTAAAATCCTGCTCAAGAACGTTCGATACGTAAAGCATAAATTG
CTCCTGGAGCCAAGCACTGTATTGGGCGTGGATGGAGAGGTAAAAATTCT
TGCCAACAACTTCCAAAGCAGCCGTCTCCTTGAACGGCAATACAAACTGG
GCAAAGACATGCAAGCGAAACCGAGGAACGGCGCGAATCAAGGGCCGCCA
GCGTTTGATGCGTTCAAGCCTCGGACCTCGGGGTCCAGGCCTGACAGCGA
GGATCGCGCCCCAGGGGCTCGCGTATCCCTGGTGACTGGGATCTGA
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protein sequence of rna269

>rna269-protein ID=rna269-protein|Name=rna269|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MQHLTDASPQQRPYPKSKLISSSSSRDKRRSSVLQRQRAARRELTDSLRA
LHRDTIAEDDVDSMTRSGNGSQLYESDVIQEDDGMMVDGQGQVQAEKIAL
RRKRARARQATIYANRFAIPEWMIEIPHDLHPTGGGGGWLVMPQPMGKRC
LMAATGGLTLTRMTSGEVLHRLASPLPNGSAWAKGPKNGWTLLDCVYQES
SRTYYVLDLLCWRKMELYDCACDFRLFFLRSKFAEEMEHRAGAILMHGTD
ASNETFHLELLPWYECHRTGLQMLRSASFPFEQDGFLFWNKEGYVQAGLT
PLILLWKDAHSSHSLYRDSLLPRWSAVLSVRLCEDPGEGKTQDYLLLTLE
GLAVGSVTRDEFHRWSRSQEQGEAGSIGGEGDIEGEGFLVCFWYEEATED
ETSQEHRLHGLTYRRICVPSSETADCWSKLLFQSRVKRGMEGGAVTFDML
LCDVEREIAHTGTLREGMIQARGSEK
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mRNA from alignment at CM002455.1:687207..689312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna269 ID=rna269|Name=rna269|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002455.1:687207..689312+ (Nannochloropsis gaditana)
TTTGACAAAGTCATCCCAGAAAATTGAGCCTCACATGCTTGTGACCAGGA
CGGCTGATTCATAATGACGCGTGCTGATTGTCTGGATGCGATGGGCATCA
ATAAAGAAGGCAAATATGAGTTGCTTTCACTGCAACGTTCCATTATCCGA
CGAGTCGTTGGTCATTCGTAACAGTGAGATTCAGACCTGTAGTATTTCCC
ATTTCTTCTTGCTCACATGAAATTTTGGCCCAGATACGTCAAGTAAAGTG
AGGAAAATTACACTTATCAACATTAAGGCCGCCTGACAGGGACAGAAGTG
TCCGTGCATTCCACTTGACTCTgctaacctccccaccccctgcaCGTCAA
GCTAGTCAGGCTACTAGTCTTACTCCTATTCCGCAGCGTCTCCCCAAATA
ATGCAGCACTTAACTGATGCGTCACCCCAGCAGCGTCCGTACCCTAAGAG
TAAACTCATATCAAGTTCCTCGTCGCGAGACAAACGGAGGTCGTCGGTCC
TTCAGCGCCAACGTGCGGCCAGAAGAGAGCTGACAGATAGTTTACGAGCT
CTACATAGGGACACCATCGCAGAGGATGACGTGGACTCGATGACGAGAAG
TGGGAATGGTAGTCAGTTGTATGAAAGCGATGTCATTCAAGAGGACGATG
GAATGATGGTGGATGGTCAAGGACAAGTACAGGCTGAGAAAATCGCGCTC
AGGCGGAAGAGAGCGCGCGCTAGACAGGCAACAATTTACGCAAATCGATT
CGCGATTCCTGAGTGGATGATCGAGATACCTCACGATCTACATCCTacgg
gagggggtggtggctggTTGGTCATGCCTCAACCTATGGGCAAAAGGTGC
TTGATGGCCGCCACGGGCGGGTTAACCTTAACACGAATGACAAGCGGAGA
GGTGCTACATAGGCTTGCTTCGCCGCTACCAAATGGTTCTGCATGGGCTA
AAGGTCCCAAAAACGGCTGGACCTTGCTGGATTGCGTGTATCAGGAATCA
AGTCGGACGTATTAtgtccttgacctcctctGCTGGCGGAAGATGGAGTT
GTATGACTGTGCCTGCGATTTCCGTCTTTTCTTCCTACGCTCCAAATTTG
CAGAAGAGATGGAGCACCGAGCGGGAGCCATTCTCATGCATGGCACAGAC
GCGAGCAACGAGACGTTCCACCTCGAACTGTTGCCGTGGTATGAGTGCCA
CAGGACAGGCCTGCAGATGCTCCGaagcgcctcctttcccttcgaGCAGG
ACGGGTTCCTGTTCTGGAACAAAGAGGGATACGTCCAGGCGGGGCTGACT
CCGCTCATTCTCCTCTGGAAGGACGCACACTCCTCTCACTCGCTCTACCG
GGACTCCCTGCTGCCACGATGGAGCGCCGTCCTGTCCGTGCGGCTGTGCG
AGGAccctggggagggaaagacacAGGACTACCTCTTGCTCACTCTAGAG
GGGTTGGCTGTGGGAAGTGTAACCCGCGATGAGTTTCACAGGTGGTCTCG
TTcacaggagcagggggaggcagggagtattggtggagaaggggacatcg
agggagagggttTCCTGGTTTGTTTTTGGTACGAGGAAGCGACCGAGGAT
GAGACGAGTCAAGAGCACCGCCTGCACGGCCTAACCTATCGCAGGATCTG
CGTACCAAGCAGCGAGACCGCGGATTGCTGGAGCAAGCTTTTGTTCCAGA
GCCGCGTCAaaaggggcatggagggaggtgccGTAACTTTCGACATGCTC
TTGTGCGacgtggaaagggagatcGCTCACACGGGCACGCTTCGAGAGGG
GATGATCCAGGCAAGAGGGAGTGAAAAGTGATGatagagagaagaggagg
ccccCTGGGTGTCTGTATTTTGGGCCAGATATTAGGGCTACAAGGGGATG
TACTATATATAGTATAAGTTTTTACTATTTATGAACATacaaatatatat
atatatatatatataaatGTGTATTGTATGAATACACTTATATATCCTGT
ATAATTCTTTCAGAGGACGTGTATACGTGCTTGTGGGCACTAGATGTAAA
TATGTAGACAAAAATTCTAAAACCTTACTCTGCACTATCTTCTCATTTTT
TAATGT
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Coding sequence (CDS) from alignment at CM002455.1:687207..689312+

>rna269 ID=rna269|Name=rna269|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002455.1:687207..689312+ (Nannochloropsis gaditana)
ATGCAGCACTTAACTGATGCGTCACCCCAGCAGCGTCCGTACCCTAAGAG
TAAACTCATATCAAGTTCCTCGTCGCGAGACAAACGGAGGTCGTCGGTCC
TTCAGCGCCAACGTGCGGCCAGAAGAGAGCTGACAGATAGTTTACGAGCT
CTACATAGGGACACCATCGCAGAGGATGACGTGGACTCGATGACGAGAAG
TGGGAATGGTAGTCAGTTGTATGAAAGCGATGTCATTCAAGAGGACGATG
GAATGATGGTGGATGGTCAAGGACAAGTACAGGCTGAGAAAATCGCGCTC
AGGCGGAAGAGAGCGCGCGCTAGACAGGCAACAATTTACGCAAATCGATT
CGCGATTCCTGAGTGGATGATCGAGATACCTCACGATCTACATCCTacgg
gagggggtggtggctggTTGGTCATGCCTCAACCTATGGGCAAAAGGTGC
TTGATGGCCGCCACGGGCGGGTTAACCTTAACACGAATGACAAGCGGAGA
GGTGCTACATAGGCTTGCTTCGCCGCTACCAAATGGTTCTGCATGGGCTA
AAGGTCCCAAAAACGGCTGGACCTTGCTGGATTGCGTGTATCAGGAATCA
AGTCGGACGTATTAtgtccttgacctcctctGCTGGCGGAAGATGGAGTT
GTATGACTGTGCCTGCGATTTCCGTCTTTTCTTCCTACGCTCCAAATTTG
CAGAAGAGATGGAGCACCGAGCGGGAGCCATTCTCATGCATGGCACAGAC
GCGAGCAACGAGACGTTCCACCTCGAACTGTTGCCGTGGTATGAGTGCCA
CAGGACAGGCCTGCAGATGCTCCGaagcgcctcctttcccttcgaGCAGG
ACGGGTTCCTGTTCTGGAACAAAGAGGGATACGTCCAGGCGGGGCTGACT
CCGCTCATTCTCCTCTGGAAGGACGCACACTCCTCTCACTCGCTCTACCG
GGACTCCCTGCTGCCACGATGGAGCGCCGTCCTGTCCGTGCGGCTGTGCG
AGGAccctggggagggaaagacacAGGACTACCTCTTGCTCACTCTAGAG
GGGTTGGCTGTGGGAAGTGTAACCCGCGATGAGTTTCACAGGTGGTCTCG
TTcacaggagcagggggaggcagggagtattggtggagaaggggacatcg
agggagagggttTCCTGGTTTGTTTTTGGTACGAGGAAGCGACCGAGGAT
GAGACGAGTCAAGAGCACCGCCTGCACGGCCTAACCTATCGCAGGATCTG
CGTACCAAGCAGCGAGACCGCGGATTGCTGGAGCAAGCTTTTGTTCCAGA
GCCGCGTCAaaaggggcatggagggaggtgccGTAACTTTCGACATGCTC
TTGTGCGacgtggaaagggagatcGCTCACACGGGCACGCTTCGAGAGGG
GATGATCCAGGCAAGAGGGAGTGAAAAGTGA
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Synonyms
Publications