rna2689, rna2689 (mRNA) Nannochloropsis gaditana

Overview
Namerna2689
Unique Namerna2689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length807
Alignment locationCM002459.1:967530..968977 -

Link to JBrowse

Properties
Property NameValue
Productsf
Orig transcript idgnl|cribi|Naga_100008g59.7826.mrna
Orig protein idgnl|cribi|Naga_100008g59.7826
GeneSFA
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:967530..968977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SFAgene2572Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2689rna2689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27934.1cds2681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2689 ID=rna2689|Name=rna2689|organism=Nannochloropsis gaditana|type=mRNA|length=807bp
ATGGAGACAGGCAGCAAGGAAGAAGAGGGAGTGCTTCCGGAGAACGTTGC
GGCTGCACAGGAAAAGAAAGAGCTGGGAAACACGGCTTTCGCAGCCAAAA
AATATGATGAAGCAATAGCTAAGTACAGCGAAGCGATTGAGCTCGACCCC
GAAAGTCATGTCTACTATTCCAATCGCAGTGCGTGCCATTGGGCGAAGAG
GGAGTGGGCCTTGGCTGCGGCAGACGCCAAAACTTGCATAGAAAAGGACC
CCGCTTTTCTGAAAGGCTATTACCGCCTCACTCTGGCTCAAATGGAGCAG
GAAGATTTTGATGGCGCCCTAGAGACCATTAAGGCATGTCTGAAGCGACA
GCCGGATAATGCGGAGATGCGAAAACAGTTGCAACTGGTCAACGCTAAGA
AAAAGGCGGCTGAATTCGTGCGAAATGCTGACAGCACTGGCGCGGCAGGG
CGAGGTATGTCAGGAGAGGAGCTCGCGGAGATTCAGGAGCAATACATCGC
AGCCAATAAAGAGCTTAAAGAAGTGCGAGCAAAGGGAGTAGCAGCTACGG
GGGAGAAACGACGTACCGAGTTGACTTTGGCAGAGCTGAGCAAAGTCGGG
GATGATACGCGTTTGTTTCGCTCCGTTGGGAAAGCCTTCATGTTGGCCGC
TCGGCCGGAGTTGCTGAATGACTTGGAAGAACGTGTCTCTGAGGCGGAAA
AGAGGGCGACCAGTATGGAGGCTCGGCATGCATATTTGGAGGCACGGCTA
TCGTCGCACGAGGCTATACTGAAAGAGGCTGCTAAGGCAGGACGAGCATC
AGCATGA
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protein sequence of rna2689

>rna2689-protein ID=rna2689-protein|Name=rna2689|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
METTYTHQPPPPPPPPPSGPSSGFVHSQYRPPSSLRHMAPPPPSGPGGMA
TTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKID
KALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVL
QSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLER
EGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDR
FQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA
AALCGGSEGGGALMASYASGSGEGGDGYVL
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mRNA from alignment at CM002459.1:967530..968977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2689 ID=rna2689|Name=rna2689|organism=Nannochloropsis gaditana|type=mRNA|length=1448bp|location=Sequence derived from alignment at CM002459.1:967530..968977- (Nannochloropsis gaditana)
GGGAAATTCATCCTCACGCTTTTATTTCTCGCACTTTTACGCATACCACG
CCAGATCTTGTGCGGTTTCTCGAAAATTGGTCAGGGAACCGGCCTCCTTC
TGGTCCACTGTTCACGCTCCAAGCGGCCTCGACAGCTAGCCGTGTGAGAT
GGAAACAACTTGTAAGTCAGCCACCCCGTTCCTATCGAAAGCCATCGACG
TATGACCTCGTTATCTGTACCAACTTGACATATATTTATCCTTCTACACA
GATACACATCAGCCGCCGCCGCCACCACCACCACCACCTTCCGGTCCGTC
TTCAGGCTTTGTACACAGTCAATACAGGCCCCCCTCCTCGCTCAGACACA
TGGCGCCGCCCCCACCTTCCGGCCCGGGCGGGATGGCCACTACGCGGTCT
GAGACCAAGCAGAAGCTTGCCTCCATCATCGACAACTTCTCGCACCTGGA
CTTGGAGGTGAAGATGGGCACTCAGCAACGTCGGGAGAAAGACGAGTCCC
GTTTGCAAGAGCTCCGTGCCTCGGTCCTCAAAATTGACAAGGCCCTCTCT
GCAGAGATTAAAAGGGGTCTAGAGCGAAACAAGTTGCTGGAAAAATGGGC
AGAAGATCAGCTGGCAGCAACTGCCAATCAGTTTGCCGCTCGACTGGAGG
AGCGCACGCAAGAGGCACAAGACAGGCTGGGGGTACTGCAGAGCCGCGTG
GACTCGCTTGAAGAATATTTTACGCGCGAAAAGGAGCAGGCCTTAAGCCT
GGTAGAAGAGCGGGGCTCGGCGTTGAGTCAAGCCTTGGTGGAGCTGCAGG
AGGGAATGGATGCGGAAAGGCGAGACCGGCTCGAGCGTGAGGGCCGGATG
CTGCGCTTACTCGGCGACCAGGAGGAGGGAGTGGCGCTGCGGTTCGAGCA
GGAACGCACCTCACGGGAGGCCAAGATTGTGGAAGTACGACAGAGCTTGG
ACGAGTTTGTGCGGGCGCGGAAGAAAGTGGACGACCGGTTCCAGGCTTTC
GTGACGGAGGAGCTCGGGGCTCTGAAGGGGGAGTTGGCGCGGGAGGCCGC
CGCTCGGGCGAGGGAGGACGACGAAATCATCGAGGCACTAGGCCGTTACA
CGAATAAGCTCCAACACAGCCTCAAGATCGTGAATGCGGCGGCACTTTGC
GGGGGGAGCGAAGGGGGGGGGGCGTTAATGGCGTCCTACGCGTCGGGATC
GGGGGAGGGGGGAGACGGGTATGTGCTCTGAAGGGGGGACATTGAGCACT
GGCGAGGTCAAATCTCTTTCAGCCTGGACACCTCTGATGGATGGCAGGTA
AAGGAGAGTACAATTTGCGGGCGACAGCTCAAGAAAACGGACGGACATTG
TAGCCTCTGGCAATCTTTTGCTTTTACATTTGCATTCAATATTTAAACCC
TTGCCCATCTGGAACACCGGTCTCTCGGCATTCGACCCTTCCATGTCT
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Coding sequence (CDS) from alignment at CM002459.1:967530..968977-

>rna2689 ID=rna2689|Name=rna2689|organism=Nannochloropsis gaditana|type=CDS|length=1986bp|location=Sequence derived from alignment at CM002459.1:967530..968977- (Nannochloropsis gaditana)
ATACACATCAGCCGCCGCCGCCACCACCACCACCACCTTCCGGTCCGTCT
TCAGGCTTTGTACACAGTCAATACAGGCCCCCCTCCTCGCTCAGACACAT
GGCGCCGCCCCCACCTTCCGGCCCGGGCGGGATGGCCACTACGCGGTCTG
AGACCAAGCAGAAGCTTGCCTCCATCATCGACAACTTCTCGCACCTGGAC
TTGGAGGTGAAGATGGGCACTCAGCAACGTCGGGAGAAAGACGAGTCCCG
TTTGCAAGAGCTCCGTGCCTCGGTCCTCAAAATTGACAAGGCCCTCTCTG
CAGAGATTAAAAGGGGTCTAGAGCGAAACAAGTTGCTGGAAAAATGGGCA
GAAGATCAGCTGGCAGCAACTGCCAATCAGTTTGCCGCTCGACTGGAGGA
GCGCACGCAAGAGGCACAAGACAGGCTGGGGGTACTGCAGAGCCGCGTGG
ACTCGCTTGAAGAATATTTTACGCGCGAAAAGGAGCAGGCCTTAAGCCTG
GTAGAAGAGCGGGGCTCGGCGTTGAGTCAAGCCTTGGTGGAGCTGCAGGA
GGGAATGGATGCGGAAAGGCGAGACCGGCTCGAGCGTGAGGGCCGGATGC
TGCGCTTACTCGGCGACCAGGAGGAGGGAGTGGCGCTGCGGTTCGAGCAG
GAACGCACCTCACGGGAGGCCAAGATTGTGGAAGTACGACAGAGCTTGGA
CGAGTTTGTGCGGGCGCGGAAGAAAGTGGACGACCGGTTCCAGGCTTTCG
TGACGGAGGAGCTCGGGGCTCTGAAGGGGGAGTTGGCGCGGGAGGCCGCC
GCTCGGGCGAGGGAGGACGACGAAATCATCGAGGCACTAGGCCGTTACAC
GAATAAGCTCCAACACAGCCTCAAGATCGTGAATGCGGCGGCACTTTGCG
GGGGGAGCGAAGGGGGGGGGGCGTTAATGGCGTCCTACGCGTCGGGATCG
GGGGAGGGGGGAGACGGGTATGTGCTCTGAATGGAAACAACTTATACACA
TCAGCCGCCGCCGCCACCACCACCACCACCTTCCGGTCCGTCTTCAGGCT
TTGTACACAGTCAATACAGGCCCCCCTCCTCGCTCAGACACATGGCGCCG
CCCCCACCTTCCGGCCCGGGCGGGATGGCCACTACGCGGTCTGAGACCAA
GCAGAAGCTTGCCTCCATCATCGACAACTTCTCGCACCTGGACTTGGAGG
TGAAGATGGGCACTCAGCAACGTCGGGAGAAAGACGAGTCCCGTTTGCAA
GAGCTCCGTGCCTCGGTCCTCAAAATTGACAAGGCCCTCTCTGCAGAGAT
TAAAAGGGGTCTAGAGCGAAACAAGTTGCTGGAAAAATGGGCAGAAGATC
AGCTGGCAGCAACTGCCAATCAGTTTGCCGCTCGACTGGAGGAGCGCACG
CAAGAGGCACAAGACAGGCTGGGGGTACTGCAGAGCCGCGTGGACTCGCT
TGAAGAATATTTTACGCGCGAAAAGGAGCAGGCCTTAAGCCTGGTAGAAG
AGCGGGGCTCGGCGTTGAGTCAAGCCTTGGTGGAGCTGCAGGAGGGAATG
GATGCGGAAAGGCGAGACCGGCTCGAGCGTGAGGGCCGGATGCTGCGCTT
ACTCGGCGACCAGGAGGAGGGAGTGGCGCTGCGGTTCGAGCAGGAACGCA
CCTCACGGGAGGCCAAGATTGTGGAAGTACGACAGAGCTTGGACGAGTTT
GTGCGGGCGCGGAAGAAAGTGGACGACCGGTTCCAGGCTTTCGTGACGGA
GGAGCTCGGGGCTCTGAAGGGGGAGTTGGCGCGGGAGGCCGCCGCTCGGG
CGAGGGAGGACGACGAAATCATCGAGGCACTAGGCCGTTACACGAATAAG
CTCCAACACAGCCTCAAGATCGTGAATGCGGCGGCACTTTGCGGGGGGAG
CGAAGGGGGGGGGGCGTTAATGGCGTCCTACGCGTCGGGATCGGGGGAGG
GGGGAGACGGGTATGTGCTCTGAATGGAAACAACTT
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Synonyms
Publications