EWM27934.1, cds2681 (CDS) Nannochloropsis gaditana

Overview
NameEWM27934.1
Unique Namecds2681
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:968817..968829 -
Alignment locationCM002459.1:967747..968726 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27934.1
Productsf
Orig transcript idgnl|cribi|Naga_100008g59.7826.mrna
GeneSFA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:968817..968829 -
CM002459.1supercontigCM002459.1:967747..968726 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005200structural constituent of cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR008374SF_assemblin
Homology
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|585110275|gb|EWM27934.1| (sf [Nannochloropsis gaditana])

HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 METTYTHQPPPPPPPPPSGPSSGFVHSQYRPPSSLRHMAPPPPSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAALCGGSEGGGALMASYASGSGEGGDGYVL 330
            METTYTHQPPPPPPPPPSGPSSGFVHSQYRPPSSLRHMAPPPPSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAALCGGSEGGGALMASYASGSGEGGDGYVL
Sbjct:    1 METTYTHQPPPPPPPPPSGPSSGFVHSQYRPPSSLRHMAPPPPSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAALCGGSEGGGALMASYASGSGEGGDGYVL 330          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|298709165|emb|CBJ31109.1| (SF-assemblin [Ectocarpus siliculosus])

HSP 1 Score: 184.496 bits (467), Expect = 4.805e-53
Identity = 102/248 (41.13%), Postives = 158/248 (63.71%), Query Frame = 0
Query:   56 TKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAAL 303
            TK +L  I+++F   D ++K GT+ RRE DE R+ +L A + +++K L+ EIKR +E NK ++ W E ++   + Q  + +  R+     RL  +  ++D+LE+ F  E  +    +++RG  L + L + +   +AER  RLEREGR+L+ L D E+ VA  FE ERTSRE    ++R+ LDE VR+R K D++FQ+FV EEL  LK  ++ E   R R+D EI++AL RYT+KLQ SLKI+N++ +
Sbjct:   23 TKARLNGILESFQAFDSDMKTGTRVRRENDEHRIAQLTAELTRLEKTLNQEIKRRVEMNKSVQVWGESEVEKMSEQLQSMVIARSDSIAGRLDDIVGKIDALEDKFDVEMAKIPVDIKQRGEELHKMLTDFENKFEAERMSRLEREGRILKQLADHEQEVATDFETERTSRENTYADLRRILDENVRSRMKGDEKFQSFVREELADLKSAVSLERQTRERDDGEIVDALNRYTSKLQSSLKIINSSEI 270          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|673030466|ref|XP_008869194.1| (hypothetical protein H310_06063 [Aphanomyces invadans] >gi|574475589|gb|ETW02589.1| hypothetical protein H310_06063 [Aphanomyces invadans])

HSP 1 Score: 183.726 bits (465), Expect = 1.429e-52
Identity = 105/258 (40.70%), Postives = 157/258 (60.85%), Query Frame = 0
Query:   43 PSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA 300
            P   G +ATT  +TK KL  ++  F+  D  +++GT+QRRE+DE RL E+RA + +++KAL+AE KR  E NK L+   +D +AA   +F A L +   +   RL  L  ++ +LE  F  EK     ++E R + L+  L    +  +AER  RLERE  +L+ L D E+ VA +F +ER  RE K  E+++SLD + + R + D +FQ    EE+  ++  L +E+  R REDDEII+AL RYT KLQ SLK++N+
Sbjct:   23 PDTIGTLATT--QTKTKLNKMMSAFASFDDNMRIGTRQRRERDEHRLAEMRADMSRLEKALNAETKRRFEMNKSLQALCDDSVAAMTAKFDALLADWMAKVDGRLQALADKIQALEAQFEYEKVHIPQVIEARTNELTAKLSNFMDAFEAERTRRLEREAEILKRLSDHEQLVADQFSKERRDREVKATELKESLDMYTKTRLRGDGKFQHLAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINS 278          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|669157480|ref|XP_008614302.1| (hypothetical protein SDRG_10108 [Saprolegnia diclina VS20] >gi|530734119|gb|EQC32361.1| hypothetical protein SDRG_10108 [Saprolegnia diclina VS20])

HSP 1 Score: 185.652 bits (470), Expect = 1.584e-52
Identity = 102/254 (40.16%), Postives = 159/254 (62.60%), Query Frame = 0
Query:   47 GGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA 300
            G +ATT  +TK KL  +++ F+  D  +++GT+QRRE+DE RL E+RA + +++KAL+AEIKR  E NK L+   ++ +A   ++F + L +   +   RL  L  ++ +LE  F  EK     ++EER + L++ L    +  + ER+ RL+RE  +L+ L D E+ VA +F +ER  RE K  E++ +LD + + R + DD+FQ    EE+  ++  L  EA  R REDDEII+AL RYT KLQ SLK++N+
Sbjct:   89 GSLATT--QTKIKLNKMMNAFASFDDNMRIGTRQRRERDEHRLAEMRAEMTRLEKALNAEIKRRFEMNKSLQALCDESVANMTSRFESLLADSMDKVDARLAGLAEKIQALEAQFEYEKVHIPQMIEERTNELTEKLSAFMDAFETERKRRLDREAEILKRLFDHEQLVADQFSKERRDREVKATELKDALDMYTKTRLRGDDKFQRVAQEEIAKIQNALVHEAQTREREDDEIIDALNRYTAKLQDSLKLINS 340          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|1173936557|gb|OQR87478.1| (SF-assemblin [Achlya hypogyna])

HSP 1 Score: 181.8 bits (460), Expect = 6.466e-51
Identity = 100/255 (39.22%), Postives = 156/255 (61.18%), Query Frame = 0
Query:   47 GGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAA 301
            G +ATT  +TK KL  +++ F+  D  +++GT+QRRE+DE RL E+RA + +++KAL+AEIKR  E NK L+   +D +     +F   L +   +   RL  L  ++ +LE  F  EK     ++E+R + L++ L    +  + ER+ RL+RE  +L+ L D E+ VA +F +ER  RE K  E++ +LD + + R + DD+FQ    EE+  ++  L  E+  R REDDEII+AL RYT KLQ SLK++N+ 
Sbjct:   97 GSLATT--QTKIKLNKMMNAFASFDDNMRIGTRQRRERDEHRLAEMRAEMTRLEKALNAEIKRRFEMNKSLQALCDDSVTLMTTRFEGLLADSMAKVDARLSGLAEKIQALEAQFEYEKVHIPQMIEDRTNELTEKLSAFMDAFETERKRRLDREAEILKRLFDHEQLVADQFSKERRDREVKATELKDALDMYTKTRLRGDDKFQHVAQEEIAKIQNLLVHESQTREREDDEIIDALNRYTAKLQDSLKLINST 349          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|813145457|ref|XP_012199814.1| (hypothetical protein SPRG_05844 [Saprolegnia parasitica CBS 223.65] >gi|641535397|gb|KDO29307.1| hypothetical protein SPRG_05844 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 179.489 bits (454), Expect = 6.938e-51
Identity = 102/272 (37.50%), Postives = 161/272 (59.19%), Query Frame = 0
Query:   30 RPPSSLRHMAPPPPSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAA 301
            R P +            G +ATT  +TK KL  +++ F+  D  +++GT+QRRE+DE RL E+R  + +++KAL+AEIKR  E NK L+   ++ +++  ++F   L     +   RL  L  ++++LE  F  EK     ++EER + L++ L    +  + ER+ RL+RE  +L+ L D E+ VA +F +ER  RE K  E++ +LD + + R + DD+FQ    EE+  ++  L  EA  R REDDEII+AL RYT KLQ SLK++N+ 
Sbjct:   16 RDPGNDDEDEDEGRETVGSLATT--QTKIKLNKMMNAFASFDDNMRIGTRQRRERDEHRLAEMRTEMTRLEKALNAEIKRRFEMNKSLQALCDESVSSMTSRFEGLLANSMDKVDARLAGLAEKIEALEAQFEHEKVHIPQMIEERTNELTEKLGAFMDAFETERKRRLDREAEILKRLFDHEQLVADQFSKERRDREVKATELKDALDMYTKTRLRGDDKFQHVAQEEIAKIQNLLVHEAQTREREDDEIIDALNRYTAKLQDSLKLINST 285          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|698787346|ref|XP_009826705.1| (hypothetical protein H257_04040 [Aphanomyces astaci] >gi|574117794|gb|ETV83275.1| hypothetical protein H257_04040 [Aphanomyces astaci])

HSP 1 Score: 177.948 bits (450), Expect = 2.513e-50
Identity = 104/265 (39.25%), Postives = 159/265 (60.00%), Query Frame = 0
Query:   36 RHMAPPPPSGPGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA 300
            R+         G +ATT  +TK KL  +++ F+  D  +++GT+QRRE+DE RL E+RA + +++KAL+AE KR  E NK L+   +D +AA + +F   L +   +   RL  L  ++ +LE  F  EK     ++E R + L+  L    +  +AER  RLERE  +L+ L D E+ VA +F +ER  RE K  E+++SLD + + R + D +FQ    EE+  ++  L +E+  R REDDEII+AL RYT KLQ SLK++N+
Sbjct:   14 RNQQDESHDAVGTLATT--QTKTKLNKMMNAFASFDDNMRIGTRQRRERDEHRLAEMRADMTRLEKALNAETKRRFEMNKSLQALCDDSVAAMSAKFDGVLADWMAKVDGRLQGLADKILTLEGQFEYEKVHIPEVIEARTNELTAKLSNFMDAFEAERTRRLEREAEILKRLSDHEQLVADQFSKERRDREVKATELKESLDMYTKTRLRGDGKFQLVAQEEIAKIQNLLVQESQTREREDDEIIDALNRYTAKLQDSLKLINS 276          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|1214680623|gb|OWY99759.1| (SF-assemblin [Phytophthora megakarya])

HSP 1 Score: 177.178 bits (448), Expect = 4.063e-50
Identity = 99/251 (39.44%), Postives = 148/251 (58.96%), Query Frame = 0
Query:   48 GMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIV 298
            GM  TRS    KL  I+  F+  D  +++GT+QRREKDE RL E+R  + +++  L AEIK+ +E NK L+ + ++Q+A     F + L  R ++  DRL  L   +  L+    +EK +   L+E + + L+Q L+   +  D ER+ R ++E  +L+ L D E   A  FE+ER  RE K  E++ +LD +   R + D++F AF  EE+  ++  L  EA AR REDDEI+EAL RYT KLQ SLK +
Sbjct:   25 GMTATRS----KLEKIMSGFTTFDDVMRIGTRQRREKDEYRLAEMRQEMSRLEHKLEAEIKKRIEMNKSLQNYCDEQVATMTTSFESLLSARAKQVDDRLDHLTQEISDLQTLVAKEKREIPLLIENKTNELTQKLIAFMDSFDEERKRRTDQEAMILKRLSDHEHATAEAFERERHDRELKYSELKNALDTYTTTRIRGDEKFHAFAQEEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKTL 271          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|566007685|gb|ETI30596.1| (hypothetical protein F443_22269 [Phytophthora parasitica P1569] >gi|567973812|gb|ETL24466.1| hypothetical protein L916_21532 [Phytophthora parasitica] >gi|568003328|gb|ETL77678.1| hypothetical protein L917_21383 [Phytophthora parasitica] >gi|568033201|gb|ETM30922.1| hypothetical protein L914_21392 [Phytophthora parasitica] >gi|570311403|gb|ETO59351.1| hypothetical protein F444_22260 [Phytophthora parasitica P1976] >gi|570935129|gb|ETP00386.1| hypothetical protein F441_22174 [Phytophthora parasitica CJ01A1] >gi|570965437|gb|ETP28556.1| hypothetical protein F442_22147 [Phytophthora parasitica P10297])

HSP 1 Score: 174.096 bits (440), Expect = 7.975e-49
Identity = 95/253 (37.55%), Postives = 152/253 (60.08%), Query Frame = 0
Query:   48 GMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA 300
            GM  TRS    KL  ++ +F+  D  +++GT+QRREKDE RL E+R  + +++  L AEIK+ +E NK L+ + ++Q+A     F   L +R ++  DRL +L   +++L+    +EK     ++E + + L+Q L+   +  + ER+ R  +E  +L+ L D E   A  FE+ER  RE K  +++ +LD +   R + D++F AF  EE+  ++  L  EA AR REDDEI+EAL RYT KLQ SLK++ +
Sbjct:   29 GMTATRS----KLEKLMSSFTTFDDVMRIGTRQRREKDEYRLAEMRQEMNRLENKLEAEIKKRIEMNKSLQNYCDEQVAQMTASFEKLLSDRAKQVDDRLDILTHEIENLQALVAKEKHDIPLMIENKTNELTQKLIAFMDSFEDERQRRTNQEAMILKRLSDHEHATAESFERERRDRELKYSDLKNALDTYSSTRIRGDEKFHAFAQEEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKVITS 277          
BLAST of EWM27934.1 vs. NCBI_GenBank
Match: gi|675213317|ref|XP_008915543.1| (hypothetical protein PPTG_18986 [Phytophthora parasitica INRA-310] >gi|567945213|gb|ETK71024.1| hypothetical protein L915_21660 [Phytophthora parasitica] >gi|568084192|gb|ETM99130.1| hypothetical protein PPTG_18986 [Phytophthora parasitica INRA-310])

HSP 1 Score: 172.555 bits (436), Expect = 3.421e-48
Identity = 94/253 (37.15%), Postives = 151/253 (59.68%), Query Frame = 0
Query:   48 GMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNA 300
            GM  TRS    KL  ++ +F+  D  +++GT+QRREKDE RL E+R  + +++  L AEIK+ +E NK L+ + ++Q+      F   L +R ++  DRL +L   +++L+    +EK     ++E + + L+Q L+   +  + ER+ R  +E  +L+ L D E   A  FE+ER  RE K  +++ +LD +   R + D++F AF  EE+  ++  L  EA AR REDDEI+EAL RYT KLQ SLK++ +
Sbjct:   29 GMTATRS----KLEKLMSSFTTFDDVMRIGTRQRREKDEYRLAEMRQEMNRLENKLEAEIKKRIEMNKSLQNYCDEQVVQMTASFEKLLSDRAKQVDDRLDILTHEIENLQALVAKEKHDIPLMIENKTNELTQKLIAFMDSFEDERQRRTNQEAMILKRLSDHEHATAESFERERRDRELKYSDLKNALDTYSSTRIRGDEKFHAFAQEEIAKIQNALVAEAQAREREDDEIVEALNRYTAKLQDSLKVITS 277          
The following BLAST results are available for this feature:
BLAST of EWM27934.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110275|gb|EWM27934.1|0.000e+0100.00sf [Nannochloropsis gaditana][more]
gi|298709165|emb|CBJ31109.1|4.805e-5341.13SF-assemblin [Ectocarpus siliculosus][more]
gi|673030466|ref|XP_008869194.1|1.429e-5240.70hypothetical protein H310_06063 [Aphanomyces invad... [more]
gi|669157480|ref|XP_008614302.1|1.584e-5240.16hypothetical protein SDRG_10108 [Saprolegnia dicli... [more]
gi|1173936557|gb|OQR87478.1|6.466e-5139.22SF-assemblin [Achlya hypogyna][more]
gi|813145457|ref|XP_012199814.1|6.938e-5137.50hypothetical protein SPRG_05844 [Saprolegnia paras... [more]
gi|698787346|ref|XP_009826705.1|2.513e-5039.25hypothetical protein H257_04040 [Aphanomyces astac... [more]
gi|1214680623|gb|OWY99759.1|4.063e-5039.44SF-assemblin [Phytophthora megakarya][more]
gi|566007685|gb|ETI30596.1|7.975e-4937.55hypothetical protein F443_22269 [Phytophthora para... [more]
gi|675213317|ref|XP_008915543.1|3.421e-4837.15hypothetical protein PPTG_18986 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2689rna2689Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications