rna2688, rna2688 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2688
Unique Name	rna2688
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3588
Alignment location	CM002459.1:964524..965434 -

Link to JBrowse

Properties


Property Name	Value
Product	heat shock protein 70
Orig transcript id	gnl\|cribi\|Naga_100008g57.7827.mrna
Orig protein id	gnl\|cribi\|Naga_100008g57.7827
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:964524..965434 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g57	gene2571	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2688	rna2688-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27935.1	cds2680	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:964524..965434-
coding sequence from alignment at CM002459.1:964524..965434-

mRNA sequence

>rna2688 ID=rna2688|Name=rna2688|organism=Nannochloropsis gaditana|type=mRNA|length=3588bp
GTACTCGCAATCAAGTATGGCTGGCCTCGACTCTCCAGTATTTCTTAGTA
TATCGGCCCACCGGTAGACTTAAACAACACCGCGTAAGACATCCGGAAAG
CGATGAGCAGAAGGCGAGCAACGCCATAACTTGAACCCGCCGTTGCCATG
GGGGAGACGGGTAGAACCCCCGAAAAGACGTCATTCCAGTAGATCACGTC
CTCCTTACAATCAAGCGGGAGATTCTTTCGCCTAACAATCGACCTTCAAG
CGTGTGAGAGCAATATATTAAACAAAAAAATAGCAGGCAAGCGTTTACGC
CCCAAACTTGGCGAGCACAAGGATGTTAAACCGAACAAGACATGAATACA
TGAGATACTTGCGATTGTAACGTAAATGCACCGCTACGACGATTCCGCAA
ATTATTTGTCATGCTCTTGCTCCTTCGTCACTTCATGCTGATGCTCGTCC
TGCCTTAGCAGCCTCTTTCAGTATAGCCTCGTGCGACGATAGCCGTGCCT
CCAAATATGCATGCCGAGCCTCCATACTGGTCGCCCTCTTTTCCGCCTCA
GAGACACGTTCTTCCAAGTCATTCAGCAACTCCGGCCGAGCGGCCAACAT
GAAGGCTTTCCCAACGGAGCGAAACAAACGCGTATCATCCCCGACTTTGC
TCAGCTCTGCCAAAGTCAACTCGGTACGTCGTTTCTCCCCCGTAGCTGCT
ACTCCCTTTGCTCGCACTTCTTTAAGCTCTTTATTGGCTGCGATGTATTG
CTCCTGAATCTCCGCGAGCTCCTCTCCTGACATACCTCGCCCTGCCGCGC
CAGTGCTGTCAGCATTTCGCACGAATTCAGCCGCCTTTTTCTTAGCGTTG
ACCAGTTGCAACTGTTTTCGCATCTCCGCATTATCCGGCTGTCGCTTCAG
ACATGCCTTAATGGTCTCTAGGGCGCCATCAAAATCTTCCTGCTCCATTT
GAGCCAGAGTGAGGCGGTAATAGCCTTTCAGAAAAGCGGGGTCCTTTTCT
ATGCAAGTTTTGGCGTCTGCCGCAGCCAAGGCCCACTCCCTCTTCGCCCA
ATGGCACGCACTGCGATTGGAATAGTAGACATGACTTTCGGGGTCGAGCT
CAATCGCTTCGCTGTACTTAGCTATTGCTTCATCATATTTTTTGGCTGCG
AAAGCCGTGTTTCCCAGCCTGGCGAACATGTTACAGAAGAACGTATTTGT
CAAAAGGCCGCGACTCGAAATAGAAAAGGGCAGATCAAATACAGTGCAAG
GTGTTTCATGGACAACACATACTCTTTCTTTTCCTGTGCAGCCGCAACGT
TCTCCGGAAGCACTCCCTCTTCTTCCTTGCTGCCTGTCTCCATCCCTGTC
TCGTCGCTCATGTCTCCAACTAATTAGTCCACGGTTCCTGTGAGTGCACC
ACGGGGGATAGAGCGCTTTGCCATGCGTGAGTTGAGAAACATGGTCGCAA
TGTTCTCAATGCAATGTCCTCAACAGAGGCGCAGTTCGCGTTGGGTGACG
ATCTTGAGCGGTTTGCACATTATTAAGTGGTGTTGGTCAGCGAAAGAACA
ACGATGGAGAGGATCGATGCGACACCCCGGTCACAAAGATGTTGCCCCCG
TGACAACTTGGTTGCAACACCAGTAATGACACCATCTCCGCATAGCTCTA
TCTTCCTTTTCCTTGAATCACGCGTGTATTTTTATTCGATCCCGCTGCAA
AAGGTGAAGGGCGGCATTCTCGTCACTATGTTCTGCCTTGGAAAGACACT
CTTCCAAGCTTGCTCCCGGCATATTTCCCGTGTACATTTCCGCGCACAAG
CACTCTGAATTGAGAAATCCTCCATCCATCAATCACCAATAAATACAGGC
TGTATCATGCCTGCAGAGACCCGAGGACAGAGGAGGCGTGGGGTCGGTAG
AGGAGCCAAGTCTGGAAGTGGTGAGGACGAGGCCCGGCACGCATCGAGAA
GTGCTACCAAGGACGGGTACACCGGGGGAGTGAGAGGTGCCTCGGCCGAT
GAGAGCAGTGCAATCGGTAGCAGCAGTCAAAACAATGACACTACTTTGGG
CGCAAATGGCCATGCGCACCACCATTCACCGCACCACGTTTCCACCGCCT
CTGCAAGGGAGCGGACGCGGTCTAAAATTGTCACGCGCGTCACCTTCGCC
ATAGTCCTTCTCGCTGTCTTTTTCGGCATCGCCTGGGCAGGCCATGTCTA
TATTTTCCTTCTTGTCTGCGGCATACAGGTTATGCTTTTCAAGGAGCTGG
TGGCCGTGCGGTACCGGGCAGCCATGGAGAAGAAAACCCCCCTCTTTCGC
ACGTTGCAATGGAGCTGGTTTGTAGCGGCCATGTTTTACGCGCACGGGGA
CTCCATCGTGAAGCTCTTGCGGGAAGACTCATTGTTGGGCATTAACGATG
ACGACCAACCGGAGAAGTCCCTTATCTACAGCTCCTTCGCGCTTTTCTCC
ACCCTCTTCGTCGTGACCGTCCTGACCCTCCGACCGGGCCTCTACAAGTA
CCAAGTAGGACAGCTGGCGTGGACCGTGGTCATCCTCCTCCTCATCGTCG
GTCAGCTGAAAGTGGTCGCCCCCAACATCTTCAGCGGCATTTTTTGGTAT
TTCTTCCCTGCCTCTTGCATCATCGTCAACGACATCATGGCCTACGTGTG
CGGGATGAGCATGGGGAGGAGATTCATCAAGCGTCCCTTCCTCCGCCTCT
CGCCCAACAAGACCTGGGAGGGCTTCATCGGCGCCTTCTTCTTCACCCTC
CTGTGGGCCTTCTGGTTCTCCCGCTTCCTGGCCCGCTTCCCTTACTTCAC
TTGCTCCTTCAAGCAGCTCCGGCCCTCGGAAGAGTTCACCTGGCAGGAGC
TTCGCCCGGGCACCACCTTCCACCAGGCCATGCTCCGCGCCAACACCGTG
CAGCCCGACCGGGTCTTCACGCAAACCACCGTCGTCCTCCCGGCGGCCCT
GGCCCATCTCCTGGGCCGTGCCTCCCTCCCGGTCAAGCCGATCCAGATGC
ATGGATTGGTGATCGGGATCTTCGGGTCGCTGGTGGCGCCTTTCGGGGGC
TTCCTCATGTCTGCTATCAAGCGGGCCTACGGCATCAAGGACTTCGACTC
CTTGATCCCGGGGCACGGAGGGGTGACGGACCGGATGGACTGCCAGCTTG
TCATGATTCTCTACACGTTCGTCCACTACCAGACCTTCATCCGGCACGTT
CCAATCAACTACCACCGCGTATGGGCCTCGGTCTCGGCCTTGAAGAGGGA
CGATCAGGTCAGGATCTGGGAGGAACTGGGGAAGTATCTGGAAAGATAGT
GCAAGGGAGGCTGGGGGGGGGACGGGAGTGGTAGGGGCACGGGCGCGTGC
ATTTATATAGACTGCTGTTGGGATAAAGCACTGTCGCGTAGGTGGGAAGT
CGTTGGGGGGGGGATGGTGACGGTACCGGAAAGGTCTGAGACATGGAAGG
GTCGAATGCCGAGAGACCGGTGTTCCAGATGGGCAAGGGTTTAAATATTG
AATGCAAATGTAAAAGCAAAAGATTGCCAGAGGCTACAATGTCCGTCCGT
TTTCTTGAGCTGTCGCCCGCAAATTGTACTCTCCTTTA

protein sequence of rna2688

>rna2688-protein ID=rna2688-protein|Name=rna2688|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
METGSKEEEGVLPENVAAAQEKKELGNTAFAAKKYDEAIAKYSEAIELDP
ESHVYYSNRSACHWAKREWALAAADAKTCIEKDPAFLKGYYRLTLAQMEQ
EDFDGALETIKACLKRQPDNAEMRKQLQLVNAKKKAAEFVRNADSTGAAG
RGMSGEELAEIQEQYIAANKELKEVRAKGVAATGEKRRTELTLAELSKVG
DDTRLFRSVGKAFMLAARPELLNDLEERVSEAEKRATSMEARHAYLEARL
SSHEAILKEAAKAGRASA

mRNA from alignment at CM002459.1:964524..965434-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2688 ID=rna2688|Name=rna2688|organism=Nannochloropsis gaditana|type=mRNA|length=911bp|location=Sequence derived from alignment at CM002459.1:964524..965434- (Nannochloropsis gaditana)
ATGGAGACAGGCAGCAAGGAAGAAGAGGGAGTGCTTCCGGAGAACGTTGC
GGCTGCACAGGAAAAGAAAGAGTATGTGTTGTCCATGAAACACCTTGCAC
TGTATTTGATCTGCCCTTTTCTATTTCGAGTCGCGGCCTTTTGACAAATA
CGTTCTTCTGTAACATGTTCGCCAGGCTGGGAAACACGGCTTTCGCAGCC
AAAAAATATGATGAAGCAATAGCTAAGTACAGCGAAGCGATTGAGCTCGA
CCCCGAAAGTCATGTCTACTATTCCAATCGCAGTGCGTGCCATTGGGCGA
AGAGGGAGTGGGCCTTGGCTGCGGCAGACGCCAAAACTTGCATAGAAAAG
GACCCCGCTTTTCTGAAAGGCTATTACCGCCTCACTCTGGCTCAAATGGA
GCAGGAAGATTTTGATGGCGCCCTAGAGACCATTAAGGCATGTCTGAAGC
GACAGCCGGATAATGCGGAGATGCGAAAACAGTTGCAACTGGTCAACGCT
AAGAAAAAGGCGGCTGAATTCGTGCGAAATGCTGACAGCACTGGCGCGGC
AGGGCGAGGTATGTCAGGAGAGGAGCTCGCGGAGATTCAGGAGCAATACA
TCGCAGCCAATAAAGAGCTTAAAGAAGTGCGAGCAAAGGGAGTAGCAGCT
ACGGGGGAGAAACGACGTACCGAGTTGACTTTGGCAGAGCTGAGCAAAGT
CGGGGATGATACGCGTTTGTTTCGCTCCGTTGGGAAAGCCTTCATGTTGG
CCGCTCGGCCGGAGTTGCTGAATGACTTGGAAGAACGTGTCTCTGAGGCG
GAAAAGAGGGCGACCAGTATGGAGGCTCGGCATGCATATTTGGAGGCACG
GCTATCGTCGCACGAGGCTATACTGAAAGAGGCTGCTAAGGCAGGACGAG
CATCAGCATGA

Coding sequence (CDS) from alignment at CM002459.1:964524..965434-

>rna2688 ID=rna2688|Name=rna2688|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at CM002459.1:964524..965434- (Nannochloropsis gaditana)
GCTGGGAAACACGGCTTTCGCAGCCAAAAAATATGATGAAGCAATAGCTA
AGTACAGCGAAGCGATTGAGCTCGACCCCGAAAGTCATGTCTACTATTCC
AATCGCAGTGCGTGCCATTGGGCGAAGAGGGAGTGGGCCTTGGCTGCGGC
AGACGCCAAAACTTGCATAGAAAAGGACCCCGCTTTTCTGAAAGGCTATT
ACCGCCTCACTCTGGCTCAAATGGAGCAGGAAGATTTTGATGGCGCCCTA
GAGACCATTAAGGCATGTCTGAAGCGACAGCCGGATAATGCGGAGATGCG
AAAACAGTTGCAACTGGTCAACGCTAAGAAAAAGGCGGCTGAATTCGTGC
GAAATGCTGACAGCACTGGCGCGGCAGGGCGAGGTATGTCAGGAGAGGAG
CTCGCGGAGATTCAGGAGCAATACATCGCAGCCAATAAAGAGCTTAAAGA
AGTGCGAGCAAAGGGAGTAGCAGCTACGGGGGAGAAACGACGTACCGAGT
TGACTTTGGCAGAGCTGAGCAAAGTCGGGGATGATACGCGTTTGTTTCGC
TCCGTTGGGAAAGCCTTCATGTTGGCCGCTCGGCCGGAGTTGCTGAATGA
CTTGGAAGAACGTGTCTCTGAGGCGGAAAAGAGGGCGACCAGTATGGAGG
CTCGGCATGCATATTTGGAGGCACGGCTATCGTCGCACGAGGCTATACTG
AAAGAGGCTGCTAAGGCAGGACGAGCATCAGCATGAATGGAGACAGGCAG
CAAGGAAGAAGAGGGAGTGCTTCCGGAGAACGTTGCGGCTGCACAGGAAA
AGAAAGAGCTGGGAAACACGGCTTTCGCAGCCAAAAAATATGATGAAGCA
ATAGCTAAGTACAGCGAAGCGATTGAGCTCGACCCCGAAAGTCATGTCTA
CTATTCCAATCGCAGTGCGTGCCATTGGGCGAAGAGGGAGTGGGCCTTGG
CTGCGGCAGACGCCAAAACTTGCATAGAAAAGGACCCCGCTTTTCTGAAA
GGCTATTACCGCCTCACTCTGGCTCAAATGGAGCAGGAAGATTTTGATGG
CGCCCTAGAGACCATTAAGGCATGTCTGAAGCGACAGCCGGATAATGCGG
AGATGCGAAAACAGTTGCAACTGGTCAACGCTAAGAAAAAGGCGGCTGAA
TTCGTGCGAAATGCTGACAGCACTGGCGCGGCAGGGCGAGGTATGTCAGG
AGAGGAGCTCGCGGAGATTCAGGAGCAATACATCGCAGCCAATAAAGAGC
TTAAAGAAGTGCGAGCAAAGGGAGTAGCAGCTACGGGGGAGAAACGACGT
ACCGAGTTGACTTTGGCAGAGCTGAGCAAAGTCGGGGATGATACGCGTTT
GTTTCGCTCCGTTGGGAAAGCCTTCATGTTGGCCGCTCGGCCGGAGTTGC
TGAATGACTTGGAAGAACGTGTCTCTGAGGCGGAAAAGAGGGCGACCAGT
ATGGAGGCTCGGCATGCATATTTGGAGGCACGGCTATCGTCGCACGAGGC
TATACTGAAAGAGGCTGCTAAGGCAGGACGAGCATCAGCATGAATGGAGA
CAGGCAGCAAGGAAGAAGAGGGAGTGCTTCCGGAGAACGTTGCGGCTGCA
CAGGAAAAGAAAGA

Synonyms

Publications