rna2685, rna2685 (mRNA) Nannochloropsis gaditana

Overview
Namerna2685
Unique Namerna2685
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1308
Alignment locationCM002459.1:961112..962647 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g55.7867.mrna
Orig protein idgnl|cribi|Naga_100008g55.7867
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:961112..962647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g55gene2568Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2685rna2685-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27975.1cds2677Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2685 ID=rna2685|Name=rna2685|organism=Nannochloropsis gaditana|type=mRNA|length=1308bp
CGTCTTCCTTTTTGGCGTGGTTTTCGGGGAATTGATGTGTCAATCACGTC
CACCTCTAGCTTTATATGGTACTGAATTAAGGGAAAATAATCTTTCATCT
ACAGGCAGCAATAGAGTGCAGGTATTCAGTTTTTCCGGAGCATTGAGACA
GATGAGGATACCTCCGCTAATAGCTGTCATCGTGTTGGGCAAGTTGGGTT
TGAATGCTGCATTCGTTCCTTCTGCATGCTCGAACATCCACAAAGCTTCA
ATTAGTTCTCACATGACCCAGCAATTGACTTACCGCTCTATTGCATTTGA
AACGATATTGATGGCTGAGGGTAACAGCCAAGTGGGTTCCATGGAGAGCG
TCTTCAAATTCATTCGAAGCGATGCGCTCTCTCTGACTGTTGGCTCCCTT
TGTCTCCTCGCTCTTGTCACAAATCGCTTGTACACTGATCCTTTATTTGA
TTCGCAAAGCCGTACCGACATTTTGGGCGTCTTCTCGGCCGGTGGCCTCC
TCCTAAATGGCTTGACATTACAGGATATCACAGTACGCGAGGCTGATGTT
GTGCAGTTACAAGGACCGGCGGTGGACGATGTGAAGGGTTTCGATGCTCT
CACCCCTCGTCAGGTCACAATCCTCCGCTGGGCAGCCCAAACTTATCTGA
AGGCCTTTCCCACGTTGCCATCTGTTCTCATCTGGCATAAAGGCCAAACT
TTGCTTCGAAATGGCATCATGGCAGATCCTGCGAGAGGGACGGGTGACGT
GAGGGTGCTTGCCATAGTACAGCAAGCTTTGAGCTCCAATCCCGAGGCGG
ACGGCTTGTGTCAGCCGACGTACATTCCCGATTTACAGGTCTTGCCCGGT
AAAATTGAATTCATGAACTACCTACCATCCATGTGCCAGGCTGTGGTTTT
ACAGCCATTTGATAGCAATCAAGGGCTAATTATTTTGGGGGGCAACAAAC
GACGAGACCTTACCCCCAAGGACTTGGCCAGAGCACGGGTCATCGCGCAA
AAGGTGCAGACTTGTTTAGCGGAGTAAAAAAATCCAGATCAGCGTATACT
AGTGCATTCAGGGTTGTCACATGGCAGTTTGCGGGGCAGCACATAGTATA
TACTATTGGCAACCTCACAAAACACCGCTGACAATGATTTGCGTCCACCA
CCGTACTCTTTTACTGTCACTCTTCACGCAGTGTACAAACCGCGTTGGAC
AATGGAAACACCCGCTTAAACAGCGTTGGACAATGGAAACACCCGCTTTC
TATACAAAAAAGTGAAGGGTGAACTCTGTGAAAGTAAACAAGTAAACATG
AAAGCAGC
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protein sequence of rna2685

>rna2685-protein ID=rna2685-protein|Name=rna2685|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MKTGKAHAYAQRWCWALVPNTGRNGSIGALSSKLCGFALAMLMMVVMMVA
INRSIRVSTPANKPDAWFTAFEHDKEGMREWLHDCRYIYLDVGSNRGIQV
RKIFEPDKYPNAAVLPVYREVFGKDWERRPEVSLHVCDMLSDDVLLLDHS
RCVNSNLCHSFIFYV
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mRNA from alignment at CM002459.1:961112..962647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2685 ID=rna2685|Name=rna2685|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp|location=Sequence derived from alignment at CM002459.1:961112..962647+ (Nannochloropsis gaditana)
ATTAGCGGAGGTATCCTCATCTGTCTCAATGCTCCGGAAAAACTGAATAC
CTGCACTCTATTGCTGCCTGTAGATGAAAGATTATTTTCCCTTAATTCAG
TACCATATAAAGCTAGAGGTGGACGTGATTGACACATCAATTCCCCGAAA
ACCACGCCAAAAAGGAAGACGACATTCTCAACCACCTGGCATGACGGTCG
AAACCCGCTCAGCTCGCTCGCGGCCCAtctaccgcctcctcgcctagAGC
TACTTGCAGTTTTGTTGTCTGTTACTAATTACCATAGAGGAAGGCAATGT
AAGATATGTGGCAGTAGACAGTTGTAATATTTAAATCCCGCATTCTTATT
TTGTCTTTaatgcccttttcctttcgcaGGTACGGCTGAATGAAAACCGG
AAAGGCCCATGCCTATGCACAGCGATGGTGTTGGGCTTTGGTGCCCAATA
CAGGCCGCAATGGGTCTATTGGAGCATTGTCTTCCAAGCTGTGTGGCTTT
GCGCTGGCCATGCTTATGATGGTAGTTATGATGGTAGCTATCAATCGGAG
CATTCGTGTTTCCACTCCGGCGAATAAGCCAGACGCCTGGTTCACCGCTT
TTGAgcacgacaaggagggcatgcgAGAATGGCTCCATGACTGCAGATAT
ATCTACCTGGATGTTGGATCCAATAGAGGAATTCAAGTTCGAAAGATCTT
TGAGCCTGATAAATACCCAAACGCCGCGGTACTTCCAGTATATCGCGAAG
TGTTCGGAAAAGATTGGGAAAGACGGCCAGAGGTCAGTTTGCACGTCTGT
GATATGTTATCTGACgatgtccttctccttgatcATTCCAGGTGTGTCAA
CAGTAATCTTTGTCATTCTTTCATCTTTTATGTGTAAAATGCGTGAACTA
GGAAATTTGCGCGGTGGGATTTGAGGCAAATCCAGCAAATACCCAGTCCT
TAAAGGAGCTTCAGGCAGCTTACAGGAGGGTCGGTTTCCGAGTGCACTTT
TTCACCGAGACCGCCGTGGCCCTGGAGGATGGTAAAGCTAATTTTTACCT
TGACAGCCAAGCACCTGTACAATATCATCAGCCAGGGTCAACATTGGTTC
CTCCAAAAGGCGGGGGCATCGATATGGATGGAGTGCGGGTCAGCACAATG
GACTTGGCGCGATATATCTTGGAAGAGGTCACAGCTCCCCACAAGGCGTT
CGGGAAGGCTGTATCGCCTATTATCGTCATGAAAATCGACGTGGAGGGAT
ACGAGCACCAACTGGTGCCGCACCTTGTGATTACCGGAGCTTTATGCAAG
GTGCACACCGTCTTCTACGAGTCTCACCTGTGGGGTACCGTGACTAGTGA
GAGAGGGGTAGGAGACGAGCCGTTCATTGCGTTTTTTGAGTGGTTTGCGC
GTGACATGGATCGCAGCGCATGTCCGGTCAATTTTATAGAGCTAGATGAC
GAGACCTATGACACTTCAAGGCGGCCCCTTCCTACGCCGAGGCTACGACA
ACGGCATTCTGAAGGAATAAAGTAACTCCTCGGGAA
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Coding sequence (CDS) from alignment at CM002459.1:961112..962647+

>rna2685 ID=rna2685|Name=rna2685|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at CM002459.1:961112..962647+ (Nannochloropsis gaditana)
ATGAAAACCGGAAAGGCCCATGCCTATGCACAGCGATGGTGTTGGGCTTT
GGTGCCCAATACAGGCCGCAATGGGTCTATTGGAGCATTGTCTTCCAAGC
TGTGTGGCTTTGCGCTGGCCATGCTTATGATGGTAGTTATGATGGTAGCT
ATCAATCGGAGCATTCGTGTTTCCACTCCGGCGAATAAGCCAGACGCCTG
GTTCACCGCTTTTGAgcacgacaaggagggcatgcgAGAATGGCTCCATG
ACTGCAGATATATCTACCTGGATGTTGGATCCAATAGAGGAATTCAAGTT
CGAAAGATCTTTGAGCCTGATAAATACCCAAACGCCGCGGTACTTCCAGT
ATATCGCGAAGTGTTCGGAAAAGATTGGGAAAGACGGCCAGAGGTCAGTT
TGCACGTCTGTGATATGTTATCTGACgatgtccttctccttgatcATTCC
AGGTGTGTCAACAGTAATCTTTGTCATTCTTTCATCTTTTATGTGTAA
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Synonyms
Publications