EWM27975.1, cds2677 (CDS) Nannochloropsis gaditana

Overview
NameEWM27975.1
Unique Namecds2677
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:961501..961998 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27975.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g55.7867.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:961501..961998 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|585110316|gb|EWM27975.1| (hypothetical protein Naga_100008g55 [Nannochloropsis gaditana])

HSP 1 Score: 348.206 bits (892), Expect = 1.687e-121
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MKTGKAHAYAQRWCWALVPNTGRNGSIGALSSKLCGFALAMLMMVVMMVAINRSIRVSTPANKPDAWFTAFEHDKEGMREWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERRPEVSLHVCDMLSDDVLLLDHSRCVNSNLCHSFIFYV 165
            MKTGKAHAYAQRWCWALVPNTGRNGSIGALSSKLCGFALAMLMMVVMMVAINRSIRVSTPANKPDAWFTAFEHDKEGMREWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERRPEVSLHVCDMLSDDVLLLDHSRCVNSNLCHSFIFYV
Sbjct:    1 MKTGKAHAYAQRWCWALVPNTGRNGSIGALSSKLCGFALAMLMMVVMMVAINRSIRVSTPANKPDAWFTAFEHDKEGMREWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERRPEVSLHVCDMLSDDVLLLDHSRCVNSNLCHSFIFYV 165          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|1129173228|gb|OLP82652.1| (hypothetical protein AK812_SmicGene36688 [Symbiodinium microadriaticum])

HSP 1 Score: 70.0922 bits (170), Expect = 5.375e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   77 GMREWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERR-PEVSLHVCDM 139
            G   WL +CR IYLD+GSN G+QVRK FEP++YP A VLP++   FG    R+ P     +C +
Sbjct:   38 GHPPWLRECRKIYLDIGSNIGVQVRKFFEPERYPGAEVLPLFDRSFGPAARRKEPSAQTGLCAL 101          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|929748473|ref|XP_014149220.1| (hypothetical protein SARC_12155 [Sphaeroforma arctica JP610] >gi|906940080|gb|KNC75318.1| hypothetical protein SARC_12155 [Sphaeroforma arctica JP610])

HSP 1 Score: 60.4622 bits (145), Expect = 6.457e-8
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 0
Query:   82 LHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERRPEVSL 134
            L  C +IYLD GSNRG+QVRK+++PD YP AA+  ++   FG    R+P  S+
Sbjct:   50 LDGCYHIYLDCGSNRGVQVRKLYQPDLYPKAAINKIFHNEFGDVHSRKPVCSV 102          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|929769544|ref|XP_014159705.1| (hypothetical protein SARC_02028 [Sphaeroforma arctica JP610] >gi|906957453|gb|KNC85803.1| hypothetical protein SARC_02028 [Sphaeroforma arctica JP610])

HSP 1 Score: 60.077 bits (144), Expect = 8.656e-8
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 0
Query:   74 DKEGMREWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKDWERR 129
            D E +   L  C ++YLD GSNRG+QV+K++EP+ YP+  V   ++++FGK  +RR
Sbjct:   11 DSENVPNELEGCYHVYLDCGSNRGVQVQKLYEPELYPDVPVNTFFKKIFGKVAKRR 66          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|612385035|ref|XP_007508039.1| (unnamed protein product [Bathycoccus prasinos] >gi|412992032|emb|CCO20758.1| unnamed protein product [Bathycoccus prasinos])

HSP 1 Score: 60.077 bits (144), Expect = 9.890e-8
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   79 REWLHDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFGKD 125
            R++   C  +YLDVGSN G+QVRK+FEP+KY  A +LP++   FGK+
Sbjct:   54 RKYADGCYNVYLDVGSNIGVQVRKLFEPEKYSGALILPIFDIHFGKE 100          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|308799882|ref|XP_003074722.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 57.7658 bits (138), Expect = 7.724e-7
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 0
Query:   83 HDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFG 123
            H C + YLD+G+N G+Q+RK++EP+KYP+A V  V+ + FG
Sbjct:   44 HGCEHFYLDMGTNIGVQIRKLYEPEKYPSAPVHAVFEKYFG 84          
BLAST of EWM27975.1 vs. NCBI_GenBank
Match: gi|1199286488|gb|OUS41638.1| (hypothetical protein BE221DRAFT_188190 [Ostreococcus tauri])

HSP 1 Score: 57.3806 bits (137), Expect = 9.500e-7
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 0
Query:   83 HDCRYIYLDVGSNRGIQVRKIFEPDKYPNAAVLPVYREVFG 123
            H C + YLD+G+N G+Q+RK++EP+KYP+A V  V+ + FG
Sbjct:   69 HGCEHFYLDMGTNIGVQIRKLYEPEKYPSAPVHAVFEKYFG 109          
The following BLAST results are available for this feature:
BLAST of EWM27975.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585110316|gb|EWM27975.1|1.687e-121100.00hypothetical protein Naga_100008g55 [Nannochlorops... [more]
gi|1129173228|gb|OLP82652.1|5.375e-1148.44hypothetical protein AK812_SmicGene36688 [Symbiodi... [more]
gi|929748473|ref|XP_014149220.1|6.457e-849.06hypothetical protein SARC_12155 [Sphaeroforma arct... [more]
gi|929769544|ref|XP_014159705.1|8.656e-844.64hypothetical protein SARC_02028 [Sphaeroforma arct... [more]
gi|612385035|ref|XP_007508039.1|9.890e-853.19unnamed protein product [Bathycoccus prasinos] >gi... [more]
gi|308799882|ref|XP_003074722.1|7.724e-751.22unnamed protein product [Ostreococcus tauri][more]
gi|1199286488|gb|OUS41638.1|9.500e-751.22hypothetical protein BE221DRAFT_188190 [Ostreococc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2685rna2685Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications