rna2681, rna2681 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2681
Unique Name	rna2681
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3916
Alignment location	CM002459.1:953032..954069 -

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Properties


Property Name	Value
Product	protein of unknown function DUF4033
Orig transcript id	gnl\|cribi\|Naga_100008g50.7886.mrna
Orig protein id	gnl\|cribi\|Naga_100008g50.7886
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:953032..954069 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g50	gene2564	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27994.1	cds2673	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2681	rna2681-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:953032..954069-
coding sequence from alignment at CM002459.1:953032..954069-

mRNA sequence

>rna2681 ID=rna2681|Name=rna2681|organism=Nannochloropsis gaditana|type=mRNA|length=3916bp
CTATTCCATCAATGCGGAGAACATGTGAAAAAGAATTGTCGTCCGTGCGC
GTGTGCTTGTGGGTATCCAACAAATTGTACTGATAGCTTTTCGGCCTCCG
ATGAATTGCGCGGTAGATGTGACCCAATAAACGGAGCCGCCTTCGAGGAT
CCCAGACCTGAACGGACAACATAAAAAAAAAACCAAAAAGCCCTACGGCG
GGTGCCGAATTTTGCGGAGCACTTGCTCAATGGTCTTCTTTATCGAGGTT
AACAACAATCAAAATGGATTATGGCTGCACGTGAACACCCAAAAACCTAT
AACAGGCCACTCTTGTGCTACGAGCGGATGCTGACTTGTGTCGTAACGCA
ACGTATGACCTTCAACCGACAGTCTCACCCCCTCTCTCCCTTATCGTTGC
TTCAGGAGCGGGGACGAGGTGGGCCCTCGCGCAGACATTGATAAATCATC
GTGCAGAAGTAAGCAGTAGGGGAACAGGGTCCGCATTTTGTTTCGTGGTC
AATTGCGATGGGGGTAGCGTCGAGCACTATGGGGGCTGCAAGCAGCAGTG
CGCAGGACGGCTCTTCCGATCGAATGGATGTAGAAGGCGTCTCTGGAGGC
AGCAGTGGGCATAGTATGGCTGCTTCTCAGCGTTGGAGTCGTTCCAGCCT
TCGCATGACAGGCGGAGACGATACCGCAATGAGCGTCCAAGTCAAAATCA
TGCCTTTGGTTCCCGGTACGGCCACCCGTGATGTGAAAACCTGCAAAATC
ACCTCCGCGGGGGCGGTGCTGGAGGGGAAAATGTCGCCCGAGATTCGGAA
CATAGCTAGGGAGTATGAGCGGGCCATGGGCCACAGTCTGCCCCGAATTC
CCATCGACGACCGGCGGGCGCAGCAACTCATGGTGGTCTGCGTGGGCGAG
GACTTTTATCTGGTGCCGGCGCCGGAATTGTTCTCCAGGCACACGGGCAC
CTGCCGCGTCCTGGGGGACAAGCACCAGCGGACCATGGACTACCACCTGG
AGGTGGGAGACTTTTTGCGGATCGGATCGGTGGGCCTCATTGTCTCGGAA
CTCGACCCTGGGCAGGAAGGGGAGGTGGAAAGTCAGGGGATCGGGGGGGC
TGGCGGGCGTTTGACTGTCCTGAGGGGGATCGAGGGGGGAAGAGGGGCGG
GGGAGGCGGGCGCCCCAAGCAGACAAGGCCAGGGGCCAGGAAGCTTGCCG
GATGGCGGTAATCTCCCGATGATGGGGGAGGAAGATGGGCGGGGGACGTC
TAGCTCAGGCAAGGCAGGCAGAAACCGGCGCTCCAGCCGGGGGTCCATCA
CCGAGAAAGACCTCTTCTATCTGCGGGAGGACGCCGGGGAGATCCGTCAG
GACCTCTTCGCGCAGGAGGAGGCGGCCACCGCCGTCCAGGAAGGCTTGGC
GGCCACTGCACTGGGACTGTCGCCGGGACGCTCTCCGCGGGTAGCCCTCT
GCTACATGTGCTTCGACGACGAGGACTCATCGAGCAACCCCCTCGTGGCG
CCCTGTTTGTGCAAGGGCGGGACCCGCTACGTCCACCTCTCGTGTCTCCG
CACCTGGCAAGCCTCGGCGGGGGACGAGAAGGACTGCGTCCTCACGTCTG
CAGAGATGAAAACCACCTGCAAGATCTGCAAGGCCAAATACAAGACGCAC
GTACGCACCGGCGACGGTCGTCTCCTCCCCCTGCTCGAGCACCATCTGCC
CCCACCCTTCATCTGCTTCCTGGTCGTCACGAAGCACGATGCGGCCGAAG
AGCTGTTCAACACCCAGTTCCAGCTATCTTTCTCGGAGAACAAGCAGATC
CTCATCGGTCGCTCCAGGAATTGCCACATGGTCCTCGACTACCGGACTGT
CTCGACCCAGCACGCCACCGTCACCTACCGGAAGGGGGGCTTTTATTTCC
GAGACCTCTCCTCCAGCAACGGGTCCATGTTGAACTTACGGAGGCCGATG
AAGCTACCTTATAACCAGTGGGTCAGGATCCGGTACGGGCGGTCGATAGT
GGCCTTCAAGGCGAGGCGGTCTTGGATGCGGGGGAGGCTCTCGTCCATGA
CCGGGACGGGGGCCGAAGTGGCGACTCTGGGGCGAGAGGAGGAGGAGGTC
TCTGAGGCGTCCAGAGAGAAGCGAAGGAGCAGCTCTGCCAACCCATCGGG
GGCTATGAGCGTCGATGGCTTGATAAATGAGGGAATGGGGGAGAGGCATA
CCAACGACACGGTGGCGACGCAGGCATGCGAGCGAGGACAGGGGACGCCC
AGCTCGCACGTGCTGAATGCCGCGCATTTGCAGCTGTTGGAATCCTTATG
CTCCATCGAGATGACGCCGCGCCAGCAGATGTTGGACCGGGAGGACAGCG
CATCGTCTCTGCCCTCCTGCGAGCAAACAGCGGGGAGGACGAGCTCGCTT
GCCTGTACCTCAGGGGCTCTGGGGGCTGCCTTCTTGCAGATGCACCTGCG
GGGAGATAGCAGTAGCGGGGGCCTGACGCAGATGGGGAAGGGCACAAAGG
AAGGACTCGGGGAGGAGGGAGGTGTTCAGGGAGATGGACCTGTAAGGAGT
GCGAGAGGTAGAGGGGAAGAAGCAGGCAGTAGGGGTGCGGTAGGGTCGAT
TTTGAACGCTCCGGGTCCACAGGGAGTCCGCGGCCGTAGCGTGCGCTTCG
TGCCTGCGGAGTCCCCTATAGCCGACAGCCTCGCCTCGCAGCTTGACGCA
TGAAGGAAGATCGCATGTGTGCTGTATAGAAGCGGTTTGGTGTTGCATGG
GCCGTCTGATCGTACGTATCTTCATGATCCGTTGAGGTGGGAGGAAGGAG
AGGGGGAATGTGTCGGTGAGAAGAGTGCGAAATCGTGAAGATTCCGAACG
CCACAATTGCCTCCGTAAGGTGCGTCTTGCCCTCATAAAGCAAGTGTACA
ACTGAAACAAAGAAATGACTGCGAGGACGGAGCAACGCCCGATGCCAGAC
GAAGCAGCGCCCATAGGCAGACCGGAGAGGGTGAGAGGGCATGGGCATCC
TCTTCATTACTTTAGCAATTGCATGCAATGGACCCACGGGCTGTGTCGCG
GTCGTCGTTTACAGTCGATGTACATGTGATCATCCGTACCCCGGATAATT
AGACGTTCTCCTGACGAGAGGCCGGCTGGTCGTAGACGCCTCCCCCCCCC
GTCCGCAGGGGACGGCCATCCTTGCTTCTGCTGCCTTTTTCCTCCACCGC
GACCCCACAACACGACGTGGTCGCCAGAGAAGGGACGCCCTCACCAGCCT
GCATGACGGGGTCGTCGGCCAGTCGGGCCGGAGGGGCTTGTCCGAAGCAC
ATGCGGCAGCTGTTGTCGGTGAAATCTGGCGTCAACGTCACAGGCACCCC
CAGGGATGATTCGAAAAACGTCTGCGTGGGAACTTTGCACAAATACACGC
ATGCATGCCGACATCCGTCGACCGCCTTCAGGTACCGGCACTCCTCAATG
AGCATGGTGGATTGCCATGCCTCTCCGTTCACTTCACCTTCGACGCGACG
GGCGGGACCCACCAACCACGTGGAGAAGAAAGGCGCGACAAGGGCGTTCG
CCTCGCAGCCCACACGGGAAGCTCCGAAGTTTTGGAAAAGAAATCGGAGG
AAAGGCGGCGTTGCTTCGTCGAGTAAGCGCGCTATCCTGGCAGACAGAAC
GAGCGGATCCGGTGCTAATACAGGGTTCAAGAGCTGCATCGTGGAGCGGG
CCATCTCCTCGTATGTTGGGGACGAAGGGGGCGGAGGAGCGTCATGTGGA
GTTATACTTGCCAATTTCGTAGCCATTGCACGGATTAGGAGACGTTCCAC
AGCATTGTCTGGTCTAGGGGGGGGTTGAGGCCTAGGCGGTGATGGTCGTT
TGCTCTTCACCGGGACCACCATGGAGACAGATGAAATGACAAAACTCAAT
CCAAGGGTGACAATAT

protein sequence of rna2681

>rna2681-protein ID=rna2681-protein|Name=rna2681|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIR
AMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIA
RLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEV
NGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLT
PDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGS
RSKDGRPLRTGGGGVYDQPASRQENV

mRNA from alignment at CM002459.1:953032..954069-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2681 ID=rna2681|Name=rna2681|organism=Nannochloropsis gaditana|type=mRNA|length=1038bp|location=Sequence derived from alignment at CM002459.1:953032..954069- (Nannochloropsis gaditana)
CTCCCTCTCGTTACCCTACGTTGCAGGCAACGTGCACGGCAATACACAAC
GTCCGGCTAAACCAGAAATCAAAATATTCTCCATAGGATGCAAAAGATCT
ATATTGTCACCCTTGGATTGAGTTTTGTCATTTCATCTGTCTCCATGGTG
GTCCCGGTGAAGAGCAAACGACCATCACCGCCTAGGCCTCAACCCCCCCC
TAGACCAGACAATGCTGTGGAACGTCTCCTAATCCGTGCAATGGCTACGA
AATTGGCAAGTATAACTCCACATGACGCTCCTCCGCCCCCTTCGTCCCCA
ACATACGAGGAGATGGCCCGCTCCACGATGCAGCTCTTGAACCCTGTATT
AGCACCGGATCCGCTCGTTCTGTCTGCCAGGATAGCGCGCTTACTCGACG
AAGCAACGCCGCCTTTCCTCCGATTTCTTTTCCAAAACTTCGGAGCTTCC
CGTGTGGGCTGCGAGGCGAACGCCCTTGTCGCGCCTTTCTTCTCCACGTG
GTTGGTGGGTCCCGCCCGTCGCGTCGAAGGTGAAGTGAACGGAGAGGCAT
GGCAATCCACCATGCTCATTGAGGAGTGCCGGTACCTGAAGGCGGTCGAC
GGATGTCGGCATGCATGCGTGTATTTGTGCAAAGTTCCCACGCAGACGTT
TTTCGAATCATCCCTGGGGGTGCCTGTGACGTTGACGCCAGATTTCACCG
ACAACAGCTGCCGCATGTGCTTCGGACAAGCCCCTCCGGCCCGACTGGCC
GACGACCCCGTCATGCAGGCTGGTGAGGGCGTCCCTTCTCTGGCGACCAC
GTCGTGTTGTGGGGTCGCGGTGGAGGAAAAAGGCAGCAGAAGCAAGGATG
GCCGTCCCCTGCGGACGGGGGGGGGAGGCGTCTACGACCAGCCGGCCTCT
CGTCAGGAGAACGTCTAATTATCCGGGGTACGGATGATCACATGTACATC
GACTGTAAACGACGACCGCGACACAGCCCGTGGGTCCATTGCATGCAATT
GCTAAAGTAATGAAGAGGATGCCCATGCCCTCTCACCC

Coding sequence (CDS) from alignment at CM002459.1:953032..954069-

>rna2681 ID=rna2681|Name=rna2681|organism=Nannochloropsis gaditana|type=CDS|length=831bp|location=Sequence derived from alignment at CM002459.1:953032..954069- (Nannochloropsis gaditana)
ATGCAAAAGATCTATATTGTCACCCTTGGATTGAGTTTTGTCATTTCATC
TGTCTCCATGGTGGTCCCGGTGAAGAGCAAACGACCATCACCGCCTAGGC
CTCAACCCCCCCCTAGACCAGACAATGCTGTGGAACGTCTCCTAATCCGT
GCAATGGCTACGAAATTGGCAAGTATAACTCCACATGACGCTCCTCCGCC
CCCTTCGTCCCCAACATACGAGGAGATGGCCCGCTCCACGATGCAGCTCT
TGAACCCTGTATTAGCACCGGATCCGCTCGTTCTGTCTGCCAGGATAGCG
CGCTTACTCGACGAAGCAACGCCGCCTTTCCTCCGATTTCTTTTCCAAAA
CTTCGGAGCTTCCCGTGTGGGCTGCGAGGCGAACGCCCTTGTCGCGCCTT
TCTTCTCCACGTGGTTGGTGGGTCCCGCCCGTCGCGTCGAAGGTGAAGTG
AACGGAGAGGCATGGCAATCCACCATGCTCATTGAGGAGTGCCGGTACCT
GAAGGCGGTCGACGGATGTCGGCATGCATGCGTGTATTTGTGCAAAGTTC
CCACGCAGACGTTTTTCGAATCATCCCTGGGGGTGCCTGTGACGTTGACG
CCAGATTTCACCGACAACAGCTGCCGCATGTGCTTCGGACAAGCCCCTCC
GGCCCGACTGGCCGACGACCCCGTCATGCAGGCTGGTGAGGGCGTCCCTT
CTCTGGCGACCACGTCGTGTTGTGGGGTCGCGGTGGAGGAAAAAGGCAGC
AGAAGCAAGGATGGCCGTCCCCTGCGGACGGGGGGGGGAGGCGTCTACGA
CCAGCCGGCCTCTCGTCAGGAGAACGTCTAA

Synonyms

Publications