EWM27994.1, cds2673 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|585110335|gb|EWM27994.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana]) HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 Query: 1 MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV 276 MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV Sbjct: 1 MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV 276
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|585113237|gb|EWM30570.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana] >gi|585113238|gb|EWM30571.1| protein of unknown function DUF4033 [Nannochloropsis gaditana]) HSP 1 Score: 125.561 bits (314), Expect = 3.608e-30 Identity = 87/211 (41.23%), Postives = 114/211 (54.03%), Query Frame = 0 Query: 32 PRPQPPPR----PDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPF---LRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGE----VNG--EAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAG 229 P+P P R D+ ++ I K+A++ AP P + YEE R + LL SA ++ L A P F R LF G+SR+ CE NA V P F +WLVGPA+ E V G E W +++ IE CRYL++V C+ ACV +CK+PTQTFF LG+PVT+TP+F D SC M FG AP +A DPV G Sbjct: 131 PKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVV--GAPSPRNFIPYEEYVRLSRLLLR---GGSTKAKSAVLSVLRSIAFPGFSSIFRALFP--GSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQ-CKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLP-IASDPVCSEG 332
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|168028991|ref|XP_001767010.1| (predicted protein [Physcomitrella patens] >gi|162681752|gb|EDQ68176.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 116.701 bits (291), Expect = 3.073e-28 Identity = 62/155 (40.00%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 73 YEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 + E+ R M+ +P+L A R+L A PP+L + + F + A ++ WLVGP E EVNG +S +LI++CRYL++ C CV LCK+PTQ FF +SLGVP+T+TP+F D SC M +GQ PP+ + +DP +Q Sbjct: 55 FVELTRKVMETRSPLLQ------RASSMRVLHSAIPPWLLKIIRRFLPNNQKTAETFAAATLYAEWLVGPCEVKEVEVNGTMQKSGVLIKKCRYLES-SNCVGMCVNLCKIPTQDFFTNSLGVPLTMTPNFEDMSCEMIYGQTPPS-IEEDPALQ 201
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|385763994|gb|AFI78800.1| (putative D27 family protein, partial [Penium margaritaceum]) HSP 1 Score: 113.235 bits (282), Expect = 3.518e-27 Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 0 Query: 99 IARLLDEATPPFLRFLFQN-FGASRVGCEANA-LVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 +A +L PP LF F +++ E NA + P S WLVGPA+ E EVNG S + I +CRYL++ GC CV +CK+PTQ FF + G+P+T+TP+F D SC M FGQ PPA LADDP +Q Sbjct: 34 VANVLMSMLPPNAPPLFXRLFPPTKLSAEINAAITVPLLSQWLVGPAKLTEVEVNGVKQWSGVKITKCRYLES-SGCVGMCVNMCKLPTQDFFTNDFGLPLTMTPNFEDMSCEMVFGQMPPA-LADDPALQ 162
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|971519492|dbj|GAQ78656.1| (hypothetical protein KFL_000170020 [Klebsormidium nitens]) HSP 1 Score: 110.153 bits (274), Expect = 1.568e-25 Identity = 63/156 (40.38%), Postives = 87/156 (55.77%), Query Frame = 0 Query: 72 TYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 +YE+ R + + ++ P V R A L + P ++ + F S G E NA + P F TWLVGP E E++G +S + IE CRYL+ GC CV LCK PTQTFF LG+P+++ P F D SC+M FG+ PP + DD VM+ Sbjct: 53 SYEDGYRGMVDVSLALMRSRPNVKEQRAAIL--QGFPKVPQWFRKAFPYSNWGAELNARITPAFFTWLVGPMEIFEVEIDGVKQRSGVQIERCRYLEE-SGCTGMCVNLCKFPTQTFFTEELGMPLSMEPKFEDLSCQMIFGKKPPD-IEDDEVMK 204
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|505033658|ref|WP_015220760.1| (DUF4033 domain-containing protein [Cyanobacterium aponinum] >gi|428685574|gb|AFZ55041.1| hypothetical protein Cyan10605_2981 [Cyanobacterium aponinum PCC 10605]) HSP 1 Score: 109.768 bits (273), Expect = 1.965e-25 Identity = 68/184 (36.96%), Postives = 95/184 (51.63%), Query Frame = 0 Query: 41 DNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTML-----IEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPA 218 DN +RL I + K+A + YE +MQ++ + L +A +L P + FL +N F ++ CE+NA A WLVG + E E+ E Q T+L I++CRYL+A GC CV +CK+PTQ FF S G+P+T+TP+F D SC M FGQ PPA Sbjct: 11 DNWFDRLFIALFSRKMAKAVGKKS----QKKGYEGFVDLSMQIMEGRNSQQQQEL---VAIVLQSLVPSPVLFLIRNLFSPTKWVCESNAWFATVLFEWLVGESEIREAEIVTEDNQVTILKSGVYIKKCRYLEA-SGCVGMCVNMCKLPTQEFFTKSFGIPLTMTPNFDDFSCEMVFGQVPPA 186
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|573953582|ref|XP_006659061.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Oryza brachyantha]) HSP 1 Score: 107.842 bits (268), Expect = 2.024e-25 Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 Query: 118 FGASRVGCEANA-LVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 F +R CE NA L PFF WLVGP++ +E EVNG +S +LI++CRYL+ GC CV +CK+PTQ+FF G+P+T+ P+F D SC M +GQ PP L +DP Q Sbjct: 33 FPPTRWACEFNAALTVPFFH-WLVGPSQVIEVEVNGVKQKSGVLIKKCRYLEN-SGCVGMCVNMCKIPTQSFFTDEFGLPLTMNPNFEDMSCEMIYGQVPPP-LEEDPASQ 140
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|385763990|gb|AFI78798.1| (putative D27 family protein, partial [Penium margaritaceum]) HSP 1 Score: 108.997 bits (271), Expect = 2.368e-25 Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 0 Query: 99 IARLLDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 +A +L PP F+ F +++ E NA + WLVGPA+ E EVNG S + I +CRYL++ GC CV +CK+PTQ FF + G+P+T+TP+F D SC M FGQ PPA LADDP +Q Sbjct: 45 VANVLMSMLPPNAPATFRRLFPPTKLSAEINAAITVPLFQWLVGPAKLTEVEVNGVKQWSGVKITKCRYLES-SGCVGMCVNMCKLPTQDFFTNDFGLPLTMTPNFEDMSCEMVFGQMPPA-LADDPALQ 172
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|674249902|gb|KFK42667.1| (hypothetical protein AALP_AA1G024100 [Arabis alpina]) HSP 1 Score: 110.538 bits (275), Expect = 2.486e-25 Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 0 Query: 103 LDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 LD A P + L + F S++ E AL F WLVGP+ +E EV+G+ +S + IE+CR+L+ + C C +LCK+P+Q F + SLG+P+ + PDF D SC+M FGQ PP + DDPVM+ Sbjct: 124 LDRAFPTVILSLVKMLFPPSKLSRELFALTTTIFFAWLVGPSEVMETEVDGKKEKSVVFIEKCRFLEQTN-CVGMCTHLCKIPSQIFIKDSLGMPIYMMPDFNDLSCKMMFGQDPP-EIQDDPVMK 247
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|1072959408|ref|XP_018490621.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Raphanus sativus]) HSP 1 Score: 110.538 bits (275), Expect = 2.761e-25 Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 0 Query: 17 SVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKL---ASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGA-SRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227 S + V ++ R P + DN + ++ I ++ L A ++ + + R + L + LVL A LD A P + L + S++ E AL F WLVGP+ E EVNG +S + IE+CR+L+ + C C +LCK+P+Q F ++SLG+P+ + PDF D SC+M FGQ PP + DDPVM+ Sbjct: 43 SRELKVAKETTRTEPSNKKNASNEDNLLSKMAINYLSKTLQDTAGMSSSSSKSSGYDSLVDTATRVAVNL--SIKQQHELVLVA-----LDRALPTVILSLIKMLLPPSKLSRELFALFTTVFFAWLVGPSEVRETEVNGRKEKSMVFIEKCRFLEQTN-CVGMCTHLCKIPSQIFIKNSLGMPIYMMPDFNDLSCKMMFGQEPP-EIKDDPVMK 248 The following BLAST results are available for this feature:
BLAST of EWM27994.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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