EWM27994.1, cds2673 (CDS) Nannochloropsis gaditana

Overview
NameEWM27994.1
Unique Namecds2673
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:953152..953982 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27994.1
Productprotein of unknown function DUF4033
Orig transcript idgnl|cribi|Naga_100008g50.7886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:953152..953982 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR025114DUF4033
Homology
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|585110335|gb|EWM27994.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV 276
            MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV
Sbjct:    1 MQKIYIVTLGLSFVISSVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAGEGVPSLATTSCCGVAVEEKGSRSKDGRPLRTGGGGVYDQPASRQENV 276          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|585113237|gb|EWM30570.1| (protein of unknown function DUF4033 [Nannochloropsis gaditana] >gi|585113238|gb|EWM30571.1| protein of unknown function DUF4033 [Nannochloropsis gaditana])

HSP 1 Score: 125.561 bits (314), Expect = 3.608e-30
Identity = 87/211 (41.23%), Postives = 114/211 (54.03%), Query Frame = 0
Query:   32 PRPQPPPR----PDNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPF---LRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGE----VNG--EAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQAG 229
            P+P  P R     D+   ++ I     K+A++    AP P +   YEE  R +  LL           SA ++ L   A P F    R LF   G+SR+ CE NA V P F +WLVGPA+    E    V G  E W +++ IE CRYL++V  C+ ACV +CK+PTQTFF   LG+PVT+TP+F D SC M FG AP   +A DPV   G
Sbjct:  131 PKPFAPERMVKYNDDIFAKIWIFLFTGKIAAVV--GAPSPRNFIPYEEYVRLSRLLLR---GGSTKAKSAVLSVLRSIAFPGFSSIFRALFP--GSSRLACEFNARVTPIFFSWLVGPAKVETSEMLNPVTGARELWSNSVKIERCRYLESVQ-CKGACVSICKLPTQTFFTEDLGMPVTMTPNFEDLSCTMTFGTAPLP-IASDPVCSEG 332          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|168028991|ref|XP_001767010.1| (predicted protein [Physcomitrella patens] >gi|162681752|gb|EDQ68176.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 116.701 bits (291), Expect = 3.073e-28
Identity = 62/155 (40.00%), Postives = 90/155 (58.06%), Query Frame = 0
Query:   73 YEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            + E+ R  M+  +P+L        A   R+L  A PP+L  + + F  +          A  ++ WLVGP    E EVNG   +S +LI++CRYL++   C   CV LCK+PTQ FF +SLGVP+T+TP+F D SC M +GQ PP+ + +DP +Q
Sbjct:   55 FVELTRKVMETRSPLLQ------RASSMRVLHSAIPPWLLKIIRRFLPNNQKTAETFAAATLYAEWLVGPCEVKEVEVNGTMQKSGVLIKKCRYLES-SNCVGMCVNLCKIPTQDFFTNSLGVPLTMTPNFEDMSCEMIYGQTPPS-IEEDPALQ 201          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|385763994|gb|AFI78800.1| (putative D27 family protein, partial [Penium margaritaceum])

HSP 1 Score: 113.235 bits (282), Expect = 3.518e-27
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   99 IARLLDEATPPFLRFLFQN-FGASRVGCEANA-LVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            +A +L    PP    LF   F  +++  E NA +  P  S WLVGPA+  E EVNG    S + I +CRYL++  GC   CV +CK+PTQ FF +  G+P+T+TP+F D SC M FGQ PPA LADDP +Q
Sbjct:   34 VANVLMSMLPPNAPPLFXRLFPPTKLSAEINAAITVPLLSQWLVGPAKLTEVEVNGVKQWSGVKITKCRYLES-SGCVGMCVNMCKLPTQDFFTNDFGLPLTMTPNFEDMSCEMVFGQMPPA-LADDPALQ 162          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|971519492|dbj|GAQ78656.1| (hypothetical protein KFL_000170020 [Klebsormidium nitens])

HSP 1 Score: 110.153 bits (274), Expect = 1.568e-25
Identity = 63/156 (40.38%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   72 TYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            +YE+  R  + +   ++   P V   R A L  +  P   ++  + F  S  G E NA + P F TWLVGP    E E++G   +S + IE CRYL+   GC   CV LCK PTQTFF   LG+P+++ P F D SC+M FG+ PP  + DD VM+
Sbjct:   53 SYEDGYRGMVDVSLALMRSRPNVKEQRAAIL--QGFPKVPQWFRKAFPYSNWGAELNARITPAFFTWLVGPMEIFEVEIDGVKQRSGVQIERCRYLEE-SGCTGMCVNLCKFPTQTFFTEELGMPLSMEPKFEDLSCQMIFGKKPPD-IEDDEVMK 204          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|505033658|ref|WP_015220760.1| (DUF4033 domain-containing protein [Cyanobacterium aponinum] >gi|428685574|gb|AFZ55041.1| hypothetical protein Cyan10605_2981 [Cyanobacterium aponinum PCC 10605])

HSP 1 Score: 109.768 bits (273), Expect = 1.965e-25
Identity = 68/184 (36.96%), Postives = 95/184 (51.63%), Query Frame = 0
Query:   41 DNAVERLLIRAMATKLASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTML-----IEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPA 218
            DN  +RL I   + K+A      +        YE     +MQ++    +     L   +A +L    P  + FL +N F  ++  CE+NA  A     WLVG +   E E+  E  Q T+L     I++CRYL+A  GC   CV +CK+PTQ FF  S G+P+T+TP+F D SC M FGQ PPA
Sbjct:   11 DNWFDRLFIALFSRKMAKAVGKKS----QKKGYEGFVDLSMQIMEGRNSQQQQEL---VAIVLQSLVPSPVLFLIRNLFSPTKWVCESNAWFATVLFEWLVGESEIREAEIVTEDNQVTILKSGVYIKKCRYLEA-SGCVGMCVNMCKLPTQEFFTKSFGIPLTMTPNFDDFSCEMVFGQVPPA 186          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|573953582|ref|XP_006659061.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Oryza brachyantha])

HSP 1 Score: 107.842 bits (268), Expect = 2.024e-25
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0
Query:  118 FGASRVGCEANA-LVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            F  +R  CE NA L  PFF  WLVGP++ +E EVNG   +S +LI++CRYL+   GC   CV +CK+PTQ+FF    G+P+T+ P+F D SC M +GQ PP  L +DP  Q
Sbjct:   33 FPPTRWACEFNAALTVPFFH-WLVGPSQVIEVEVNGVKQKSGVLIKKCRYLEN-SGCVGMCVNMCKIPTQSFFTDEFGLPLTMNPNFEDMSCEMIYGQVPPP-LEEDPASQ 140          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|385763990|gb|AFI78798.1| (putative D27 family protein, partial [Penium margaritaceum])

HSP 1 Score: 108.997 bits (271), Expect = 2.368e-25
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 0
Query:   99 IARLLDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            +A +L    PP     F+  F  +++  E NA +      WLVGPA+  E EVNG    S + I +CRYL++  GC   CV +CK+PTQ FF +  G+P+T+TP+F D SC M FGQ PPA LADDP +Q
Sbjct:   45 VANVLMSMLPPNAPATFRRLFPPTKLSAEINAAITVPLFQWLVGPAKLTEVEVNGVKQWSGVKITKCRYLES-SGCVGMCVNMCKLPTQDFFTNDFGLPLTMTPNFEDMSCEMVFGQMPPA-LADDPALQ 172          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|674249902|gb|KFK42667.1| (hypothetical protein AALP_AA1G024100 [Arabis alpina])

HSP 1 Score: 110.538 bits (275), Expect = 2.486e-25
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 0
Query:  103 LDEATPPFLRFLFQN-FGASRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            LD A P  +  L +  F  S++  E  AL    F  WLVGP+  +E EV+G+  +S + IE+CR+L+  + C   C +LCK+P+Q F + SLG+P+ + PDF D SC+M FGQ PP  + DDPVM+
Sbjct:  124 LDRAFPTVILSLVKMLFPPSKLSRELFALTTTIFFAWLVGPSEVMETEVDGKKEKSVVFIEKCRFLEQTN-CVGMCTHLCKIPSQIFIKDSLGMPIYMMPDFNDLSCKMMFGQDPP-EIQDDPVMK 247          
BLAST of EWM27994.1 vs. NCBI_GenBank
Match: gi|1072959408|ref|XP_018490621.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Raphanus sativus])

HSP 1 Score: 110.538 bits (275), Expect = 2.761e-25
Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 0
Query:   17 SVSMVVPVKSKRPSPPRPQPPPRPDNAVERLLIRAMATKL---ASITPHDAPPPPSSPTYEEMARSTMQLLNPVLAPDPLVLSARIARLLDEATPPFLRFLFQNFGA-SRVGCEANALVAPFFSTWLVGPARRVEGEVNGEAWQSTMLIEECRYLKAVDGCRHACVYLCKVPTQTFFESSLGVPVTLTPDFTDNSCRMCFGQAPPARLADDPVMQ 227
            S  + V  ++ R  P   +     DN + ++ I  ++  L   A ++   +         +   R  + L   +     LVL A     LD A P  +  L +     S++  E  AL    F  WLVGP+   E EVNG   +S + IE+CR+L+  + C   C +LCK+P+Q F ++SLG+P+ + PDF D SC+M FGQ PP  + DDPVM+
Sbjct:   43 SRELKVAKETTRTEPSNKKNASNEDNLLSKMAINYLSKTLQDTAGMSSSSSKSSGYDSLVDTATRVAVNL--SIKQQHELVLVA-----LDRALPTVILSLIKMLLPPSKLSRELFALFTTVFFAWLVGPSEVRETEVNGRKEKSMVFIEKCRFLEQTN-CVGMCTHLCKIPSQIFIKNSLGMPIYMMPDFNDLSCKMMFGQEPP-EIKDDPVMK 248          
The following BLAST results are available for this feature:
BLAST of EWM27994.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110335|gb|EWM27994.1|0.000e+0100.00protein of unknown function DUF4033 [Nannochlorops... [more]
gi|585113237|gb|EWM30570.1|3.608e-3041.23protein of unknown function DUF4033 [Nannochlorops... [more]
gi|168028991|ref|XP_001767010.1|3.073e-2840.00predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|385763994|gb|AFI78800.1|3.518e-2747.33putative D27 family protein, partial [Penium marga... [more]
gi|971519492|dbj|GAQ78656.1|1.568e-2540.38hypothetical protein KFL_000170020 [Klebsormidium ... [more]
gi|505033658|ref|WP_015220760.1|1.965e-2536.96DUF4033 domain-containing protein [Cyanobacterium ... [more]
gi|573953582|ref|XP_006659061.1|2.024e-2549.55PREDICTED: beta-carotene isomerase D27, chloroplas... [more]
gi|385763990|gb|AFI78798.1|2.368e-2545.38putative D27 family protein, partial [Penium marga... [more]
gi|674249902|gb|KFK42667.1|2.486e-2543.65hypothetical protein AALP_AA1G024100 [Arabis alpin... [more]
gi|1072959408|ref|XP_018490621.1|2.761e-2532.56PREDICTED: beta-carotene isomerase D27, chloroplas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2681rna2681Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications