rna2679, rna2679 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2679
Unique Name	rna2679
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3495
Alignment location	CM002459.1:947950..949477 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g48.7821.mrna
Orig protein id	gnl\|cribi\|Naga_100008g48.7821
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:947950..949477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g48	gene2562	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27929.1	cds2671	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2679	rna2679-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:947950..949477-
coding sequence from alignment at CM002459.1:947950..949477-

mRNA sequence

>rna2679 ID=rna2679|Name=rna2679|organism=Nannochloropsis gaditana|type=mRNA|length=3495bp
ATTTAATTTCCACCAGCTTCTGACAACGATAGTCCTCCTTTCGTTGCTAT
TATCGCAGTTCCACTTCAACATTCTTCCACCCAATACTTCGACGGAAAGC
AGCTATATGGAGCCTCTCACAAGAGGCTCAAGTCTAGCAGAAGCCTCATG
TGTTTGCTTGGGAAGTGGGCGTTTCTTGCGGGCTGTTCTGGTCCCCGCCG
TGGAAGCTGCTGGCCTCAAAAGCATCGTATTCCAGACCCGTGGTAATTCC
TTCCTATCCATGATGTACGGTCCGCGAAGGAGCAAGGGAAGCTACGAAGT
AGACACGGTGGAGTTCGACGGACGTACACTGACCACTAGTCACCCTATCA
TTGCGGCGGGTACATTGGGAACTGCTGAGGGGCAAAAAGCCTGGGCGGCC
CTACCCGCCCAACTGCCCCATCTGCGGGTCATTGGCGTCGGTGTCACAGA
GGCAGGCCTGGCACCAGGCACCGCTGCCATGAAAGATCTGTGTCAATTTC
TGTATGCATGCTTTAAGGCAGACATACAAGGGCCGTTGAGCATCATCAAC
ACGGACAATGTACCTGGCAATGGGCCCAAAATTCGTTCTTTCGTAACGGA
ACCTACACAGCTTTCAAAAGTTACAGCGTTGCCGGAAACTTCGAAGGAAA
TGGAAGATTTCCTCTCTTTTCTTGATAATAAAGTGGTGTTTCACAGCACG
ATGGTTGATCGGATAACCTCTCAGCGGGTCGGAGACGGAGACGTCCCTCG
TGCCGAACCCCTTCCCACGAAAGCCTTGGTCATCGAGGACCTCGGAAACG
TCTTACCGGCTGCCCTTGAAGAAGCCCCTGGCGTGGTGATTCGGCGGACA
GCGGGTGAGATCGAAATTGACCACAGCCTCAAACTTCGCGTCGCCAATGC
CATCCACACGGCTATGGTCTACTGCATGGCCCTGTCCCGGATGCCGGACA
CCTCCGCCTGCATCGGCCACCCATTGATCATGCCCTACATCCAAGCCCTC
TACGAGCAAGACATCGTCCGCATGACATCTATGGGCATTCCTCTTGCCGA
AGTCCAGAGCGTATACGACGACTGGGTCCGTCGCCTCCAGCACCCGCAGT
TTGGCCTCGGCTGCTTGTTTGTGAGCCAAAATGCCTCCCAAAAGCTGGGG
CTCCGTCTGCTCCCCACCATCCGCGCGTCCATTGATGCTGTGGGATTGCC
GGGACCGGCATTTGCCTTCGCTGTGGCAGCGATGCTTCGCTTTCTGACCC
CGTGCGGTCCCCAACCTCGCCTCGCGCCGAATGTTTTCATGGGAAGCATG
GATCCTAAGCCTCAAGCCCAACCCACCGAGGACAATCCCAAGCGCGCGAA
GCGCTCCAACGGCACTGAAATTGTCTACGTGGGAGATCTTACGGCCGATT
TTGAGGCGGGCACATATTCTTTCAGGGACGGGGAGGGCACGGTGCCCCGG
TTGCTGCAGGCGGCCCAGGCGGCTGCTGGCGCCGTGGGACTGGCGGATGA
GGGTAAGGCAGGTCGGATAGCAGTGTTGCACTCGGCAGTGAGCAAGGTCC
TGAGTCTTCAAGCAGGGCTAGACTCCGTCGCGGCGACGCCCTTCGTGTCC
TTGGTGGCCGCCTATTATGTGAAAATGGTCGACGGGGCTCCGTGCATGGA
GGTGCTTCGACCCATCGTGGAGGAGGCAATCAGCATGAAAAACATCCCGG
TTTCGGCACGGGAAGACATGGGCACGGAGCTGATGCGTCCGTTGCGCCCG
GGGGAGATCGCCCGTGTCGTGAGGGATGAAATGGAGAGAGTCCAAGTGGT
TGACTTGCACACCCACCTCTTTCCGCCCTCCCACGGGGACCTGATGCTCT
GGGGCATCGACGACCTCCTCACCTACCACTATTTGATCGCGGAGTACTTT
CAGACCGCCCCCCGGGCCATGGCTCCGGCCTCTTTCTTCGCACGGCCCAA
GGCTTTCCAGGCAGACATGATATGGGCCGCCCTTTTCGTCCAACGGTCTC
CTCTGTCGGAGGCATGCAAGGGGGTTTTGACCACCCTGGAAAAGTTGGGC
CTGCGACAGGAGCTTCGTGCTCGAGATCTCTCGGGCATTCGGAGGTGGTT
CGCGGAGCAAGACCCCGATGCATATTGCGAGAAAGTGTTTAGCCTGGCGG
GCGTCAAGTATTGTGTCATGACCAACATCCCCTTCGACCCCACAGAAGCT
AAGCATTGGCGCCCTGCCAAGAAAGCCTACACGCGACGCTTTCGCTCGGC
GTTGCGGGTGGATCCGCTACTCAAAGGTGACTGGGAGACTGTGTCGGCGT
GCTTGACAGCCGCAAATTACCCGCAAACGCTGGAAGGTGCCAGGCAATAC
CTGCGGGATTGGGCGGAGACGATGCAGCCGGAGTATCTGATGGCATCCAC
GCCCCACGACTTCCAATACGCAGGAAAAGAAGGGGATGGAGGATCATGTC
AGAGCAGCAAAGATGGAAAGAAAGGTGGTCAGGAGGGTATCGGGCAGGGG
TGCGGTGTAACCATGATCGACAAGTCTCCCAAAGGAGCAGAATTACTGGA
AAAAGTCCTTATTCCAGTCGCAGAGGAGCTGTCTTTGCCCATCGCGATGA
AGTTAGGCGCACATCGTGCTGTGAACCCCAGCCTCGGCACCGCTGGAGAC
GGATTGGTCGCAGCGGACGTCGGGGATCTCCGCCGCCTCTGTACGGCTCA
CCCGCAGGTCAAGTTCCTGGCCACGTTCTTGGCGAGGGTCAGTCAGCACG
AGGCAGCAGTGCTCGCCAACAAGTTTCCCAACTTGCATTTGTACGGCTGT
TGGTGGTATTGTAATAACCCGAGCATCATTCGAGAGATCACCGCCATGCG
GTTAGAAATCTTGGGGACGGCTTTTACGGCGCAGCATTCCGACGCCAGGG
TCCTTGATCAACTAATCTACAAGTGGTCACACTCTAGGCGAGTTATAGGC
GAGGTGTTGGCAGGAGAGTACGTGTCATTGGCACAGACAGGATGGAAATT
GACGAGGGAGGAAGTGAGGAGAGATGTTGAGAGATTGCTTGGGGGCGCTT
ACGAGGAATTCATGCAAAAATAAAAACATAGAAGGGTGGGGGGGGGCATG
TGAAAGGAAGTAAATAGAGAGCTGGTTTGCATAATGAAAAATTGCAAAAG
CTGTACCAGCCCGTATCGACCCCAGGCCAATGGTCAGACAGGGAGGGCCA
ACCAAACCTCTCTAGGCATGCTCTCCATGTTTTCCGAGGAAGTCGACCGG
GACTGGGACACGCATATACCGTCATATATTTTTGCTCATAAGACGAGCGT
AAATCCCAGTTTCAATGAAACTCCGTTTTATTTGATGTCCGGACAGGACC
CTCAATCACCGACGGGCGTGCTCTTTGATGGCCCCCAACATCGGTAAGGG
CAGTACAGACAACTTCTTTGACCGATGTATTCTTGGTTCTTTAATGTAGA
TGAGAAAGTTCACCGATCGATTTTAGAAAAAGCACCATCACCTCA

protein sequence of rna2679

>rna2679-protein ID=rna2679-protein|Name=rna2679|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MDVFKRALDFNVKGSESVQVRTAMGGLVTMASAGLCFLLLVSELLSFSRV
EIVNHMTVDSTAPSLETTIPINFHITFPLVKCKDISFDAESTRGDAVVYL
ASQDVRKTPATGVESSLRPPEGQTGCTVEGTLFTGKVAGEFRINLGEDVP
LQLAPMVAVEFKTNYTAHKIHHFSVGERKENKIYPLDGLETIPDGEGHYL
YNLRIIPTVEQPLYGSPEHNFEFAFQESLHKGTRLSPGMTALTLSAPGIH
FFYEFYPVMVEYTHQRTPFLQFVTQALAVVGGIFTMSNILDSILYQSARV
MKKMA

mRNA from alignment at CM002459.1:947950..949477-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2679 ID=rna2679|Name=rna2679|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp|location=Sequence derived from alignment at CM002459.1:947950..949477- (Nannochloropsis gaditana)
ATGTATCATCTTGCCATGATGAGTCTTATCTTGTGCACGGGATCCTTATA
TGGTCATATGCACCTGCTCTTTTTCTCAATGGATGAGCGAAGACCCATCC
TATCCCCATTTTTTTCGGCATTCTCTTTTTGCTGAGACCCATTCTTTAAC
ACTGCAACCATAGCTCAATCACAAATATCTACTTGACAGGAGGACTCAAG
ATGGACGTTTTCAAGCGGGCGCTTGACTTCAATGTGAAGGGTTCAGAGAG
TGTGCAAGTACGCACCGCCATGGGGGGTCTGGTGACCATGGCGAGCGCAG
GTCTCTGCTTCTTACTCCTCGTCTCCGAGTTATTATCCTTTTCCCGGGTG
GAAATTGTGAACCACATGACTGTCGACTCAACAGCGCCCTCCCTGGAGAC
AACAATACCAATCAATTTTCACATCACTTTTCCCTTGGTGAAGTGCAAAG
ACATAAGTTTTGATGCAGAGTCCACGAGGGGCGATGCCGTCGTTTACTTG
GCATCCCAGGATGTCCGCAAAACTCCGGCGACAGGAGTCGAATCCAGCTT
GAGACCACCAGAGGGGCAAACAGGTTGCACGGTGGAAGGAACGCTTTTCA
CCGGCAAGGTGGCAGGGGAATTTCGGATCAACTTGGGCGAGGACGTGCCG
TTGCAGCTCGCCCCGATGGTAGCTGTGGAGTTTAAGACAAATTACACAGC
CCACAAGATCCATCATTTTTCGGTCGGCGAGCGAAAAGAAAACAAGATTT
ACCCGTTGGACGGCTTGGAAACTATCCCCGACGGAGAAGGACACTATCTG
TATAACTTGCGTATCATTCCCACGGTGGAACAGCCTCTTTACGGCTCCCC
GGAGCACAATTTCGAGTTTGCCTTCCAAGAATCTTTGCACAAAGGCACGC
GGCTTTCCCCTGGCATGACTGCGCTAACGTTGAGTGCCCCGGGCATCCAT
TTCTTCTACGAGTTCTACCCAGTAATGGTGGAGTACACGCACCAGCGCAC
CCCCTTCCTGCAGTTCGTGACGCAGGCACTGGCGGTGGTGGGAGGCATAT
TCACCATGTCGAATATTCTTGACTCGATTCTTTATCAATCCGCGCGGGTA
ATGAAAAAAATGGCCTGAAGCGGTTGGAGGCTAGGAATAGTGAGGGAAGA
CAGATGACCAGGAAGGAGTCGACAGCCGGCTCTTGATGCGGAATGTGTAT
AGTAATACGAGGGGAGGCAAATGACGAGGATGGTATTCCATGCAAAGCAT
GGTGACAAAGAAAGCATTCGAGACCAAAAATTGAGGTGATGGTGCTTTTT
CTAAAATCGATCGGTGAACTTTCTCATCTACATTAAAGAACCAAGAATAC
ATCGGTCAAAGAAGTTGTCTGTACTGCCCTTACCGATGTTGGGGGCCATC
AAAGAGCACGCCCGTCGGTGATTGAGGGTCCTGTCCGGACATCAAATAAA
ACGGAGTTTCATTGAAACTGGGATTTACGCTCGTCTTATGAGCAAAAATA
TATGACGGTATATGCGTGTCCCAGTCCC

Coding sequence (CDS) from alignment at CM002459.1:947950..949477-

>rna2679 ID=rna2679|Name=rna2679|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002459.1:947950..949477- (Nannochloropsis gaditana)
ATGGACGTTTTCAAGCGGGCGCTTGACTTCAATGTGAAGGGTTCAGAGAG
TGTGCAAGTACGCACCGCCATGGGGGGTCTGGTGACCATGGCGAGCGCAG
GTCTCTGCTTCTTACTCCTCGTCTCCGAGTTATTATCCTTTTCCCGGGTG
GAAATTGTGAACCACATGACTGTCGACTCAACAGCGCCCTCCCTGGAGAC
AACAATACCAATCAATTTTCACATCACTTTTCCCTTGGTGAAGTGCAAAG
ACATAAGTTTTGATGCAGAGTCCACGAGGGGCGATGCCGTCGTTTACTTG
GCATCCCAGGATGTCCGCAAAACTCCGGCGACAGGAGTCGAATCCAGCTT
GAGACCACCAGAGGGGCAAACAGGTTGCACGGTGGAAGGAACGCTTTTCA
CCGGCAAGGTGGCAGGGGAATTTCGGATCAACTTGGGCGAGGACGTGCCG
TTGCAGCTCGCCCCGATGGTAGCTGTGGAGTTTAAGACAAATTACACAGC
CCACAAGATCCATCATTTTTCGGTCGGCGAGCGAAAAGAAAACAAGATTT
ACCCGTTGGACGGCTTGGAAACTATCCCCGACGGAGAAGGACACTATCTG
TATAACTTGCGTATCATTCCCACGGTGGAACAGCCTCTTTACGGCTCCCC
GGAGCACAATTTCGAGTTTGCCTTCCAAGAATCTTTGCACAAAGGCACGC
GGCTTTCCCCTGGCATGACTGCGCTAACGTTGAGTGCCCCGGGCATCCAT
TTCTTCTACGAGTTCTACCCAGTAATGGTGGAGTACACGCACCAGCGCAC
CCCCTTCCTGCAGTTCGTGACGCAGGCACTGGCGGTGGTGGGAGGCATAT
TCACCATGTCGAATATTCTTGACTCGATTCTTTATCAATCCGCGCGGGTA
ATGAAAAAAATGGCCTGA

Synonyms

Publications