rna2678, rna2678 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2678
Unique Name	rna2678
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1107
Alignment location	CM002459.1:944702..948196 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g47.7824.mrna
Orig protein id	gnl\|cribi\|Naga_100008g47.7824
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:944702..948196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g47	gene2561	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2678	rna2678-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27932.1	cds2670	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:944702..948196+
coding sequence from alignment at CM002459.1:944702..948196+

mRNA sequence

>rna2678 ID=rna2678|Name=rna2678|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp
ATGTGCACTTCTTTGAGAAGTGACATGGCTTTTCGATGTGCTCTTTGCTC
TCGAAGAAATGCGGAGACTGATATTTTGATCAGGAGTAAATGTCAAAAAT
CTATTATCGGCGCAGGTTCACGACAGCAAGGGATGCTACGACGCGGGTTG
AGGCAACAAGGGGGCCATCTTGCTTTCTATTGCCAAATTTCCAAGGATTT
CAGACGAAGCGAAACTCAACATGATGTTGGCGACAAACGATATAAAGCTC
TCTATACCACTGTGGCGGCATCCGCTGGCTTGGACGACATGAGAAGACGT
GTCGGTGGTTTTCCAAAGCAAGAAGAGAAGGCGTTGAATTGGCCACTCGG
TCGAAATAAGGAGATGGGAAGAAGAAAATTTACCTCACTACCAAGTCCTG
AGACAGCTTCAAAAGGGGATGGAAAAAGAATGCCTGACGAGAGTGCCGAG
GAGGGAGAGAAGCATCCACCAGATTCATCGCCACCGCTTTTTCTATGTCC
GGCACAGCGCTTCTTCCGGCTTCTTGCGGCAGCATCTCTTACACAAGTGA
CATTTTGGACCTCGTACGCCTTCCTGCCTTCAGAATTGAGTGGCAGTATG
AGCTACTGGGGCATTGTTGGCTCGGGCGCCTTTGTATTGATTGCACGGCA
TTTTGCGATGGTATGTTGTGATTGTTCCCCCTTGCGTATTTTTCCACGTC
CCATCATCTCATTCGATACTTTCTTGCAGCACTACGTGTGGGAAATGGAT
CAAATTTCTCCAGTCGCTTTTCGAATTGCCACCCACACCTTCTGGGGCAA
TAAAGGGCCCGATCGCATCGTGCAAATCGGCACAAGTCAATGCCAGCACA
CATCCCGTTATATCGCCGCGAAGATCAAGGGTGACTCCTTCTATTACCTT
CTTGACATCAAGGAAGGAAAATTCGGAAGTGAGAATGCGAAAGAGCAGAT
CATTCGCATGTTTCAAGGACTAAGAACGGACGCGCAGGGGCAGCATCTCG
TCAGAGGGGTGGACGGTGACAATGAAGATAGTGCAGAGCAAAGTGATATC
GCTCGACGAAAAAGTGGTGGTCGGCGATGGAAGGGCGGATGGAAGGGAAA
AGCATGA

protein sequence of rna2678

>rna2678-protein ID=rna2678-protein|Name=rna2678|organism=Nannochloropsis gaditana|type=polypeptide|length=988bp
MEPLTRGSSLAEASCVCLGSGRFLRAVLVPAVEAAGLKSIVFQTRGNSFL
SMMYGPRRSKGSYEVDTVEFDGRTLTTSHPIIAAGTLGTAEGQKAWAALP
AQLPHLRVIGVGVTEAGLAPGTAAMKDLCQFLYACFKADIQGPLSIINTD
NVPGNGPKIRSFVTEPTQLSKVTALPETSKEMEDFLSFLDNKVVFHSTMV
DRITSQRVGDGDVPRAEPLPTKALVIEDLGNVLPAALEEAPGVVIRRTAG
EIEIDHSLKLRVANAIHTAMVYCMALSRMPDTSACIGHPLIMPYIQALYE
QDIVRMTSMGIPLAEVQSVYDDWVRRLQHPQFGLGCLFVSQNASQKLGLR
LLPTIRASIDAVGLPGPAFAFAVAAMLRFLTPCGPQPRLAPNVFMGSMDP
KPQAQPTEDNPKRAKRSNGTEIVYVGDLTADFEAGTYSFRDGEGTVPRLL
QAAQAAAGAVGLADEGKAGRIAVLHSAVSKVLSLQAGLDSVAATPFVSLV
AAYYVKMVDGAPCMEVLRPIVEEAISMKNIPVSAREDMGTELMRPLRPGE
IARVVRDEMERVQVVDLHTHLFPPSHGDLMLWGIDDLLTYHYLIAEYFQT
APRAMAPASFFARPKAFQADMIWAALFVQRSPLSEACKGVLTTLEKLGLR
QELRARDLSGIRRWFAEQDPDAYCEKVFSLAGVKYCVMTNIPFDPTEAKH
WRPAKKAYTRRFRSALRVDPLLKGDWETVSACLTAANYPQTLEGARQYLR
DWAETMQPEYLMASTPHDFQYAGKEGDGGSCQSSKDGKKGGQEGIGQGCG
VTMIDKSPKGAELLEKVLIPVAEELSLPIAMKLGAHRAVNPSLGTAGDGL
VAADVGDLRRLCTAHPQVKFLATFLARVSQHEAAVLANKFPNLHLYGCWW
YCNNPSIIREITAMRLEILGTAFTAQHSDARVLDQLIYKWSHSRRVIGEV
LAGEYVSLAQTGWKLTREEVRRDVERLLGGAYEEFMQK

mRNA from alignment at CM002459.1:944702..948196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2678 ID=rna2678|Name=rna2678|organism=Nannochloropsis gaditana|type=mRNA|length=3495bp|location=Sequence derived from alignment at CM002459.1:944702..948196+ (Nannochloropsis gaditana)
ATTTAATTTCCACCAGCTTCTGACAACGATAGTCCTCCTTTCGTTGCTAT
TATCGCAGTTCCACTTCAACATTCTTCCACCCAATACTTCGACGGAAAGC
AGCTATATGGAGCCTCTCACAAGAGGCTCAAGTCTAGCAGAAGCCTCATG
TGTTTGCTTGGGAAGTGGGCGTTTCTTGCGGGCTGTTCTGGTCCCCGCCG
TGGAAGCTGCTGGCCTCAAAAGCATCGTATTCCAGACCCGTGGTAATTCC
TTCCTATCCATGATGTACGGTCCgcgaaggagcaagggaagcTACGAAGT
AGACACGGTGGAGTTCGACGGACGTACACTGACCACTAGTCACCCTATCA
TTGCGGCGGGTACATTGGGAACTGCTGAGGGGCAAAAAGCCTGGGCGGCC
CTACCCGCCCAACTGCCCCATCTGCGGGTCATTGGCGTCGGTGTCACAGA
GGCAGGCCTGGCACCAGGCACCGCTGCCATGAAAGATCTGTGTCAATTTC
TGTATGCATGCTTTAAGGCAGACATACAAGGGCCGTTGAGCATCATCAAC
ACGGACAATGTACCTGGCAATGGGCCCAAAATTCGTTCTTTCGTAACGGA
ACCTACACAGCTTTCAAAAGTTACAGCGTTGCCGGAAACTTcgaaggaaa
tggaagatttcctctcttttcttgaTAATAAAGTGGTGTTTCACAGCACG
ATGGTTGATCGGATAACCTCTCAGCGGGTCGGAGACGGAGACGTCCCTCG
TGCCGAACCCCTTCCCACGAAAGCCTTGGTCATCGAGGACCTCGGAAACG
TCTTACCGGCTGCCCTTGAAGAAGCCCCTGGCGTGGTGATTCGGCGGACA
GCGGGTGAGATCGAAATTGACCACAGCCTCAAACTTCGCGTCGCCAATGC
CATCCACACGGCTATGGTCTACTGCATGGCCCTGTCCCGGATGCCGGACA
CCTCCGCCTGCATCGGCCACCCATTGATCATGCCCTACATCCAAGCCCTC
TACGAGCAAGACATCGTCCGCATGACATCTATGGGCATTCCTCTTGCCGA
AGTCCAGAGCGTATACGACGACTGGGTCCGTcgcctccagcacccgcAGT
TTGGCCTCGGCTGCTTGTTTGTGAGCCAAAATGCCTCCCAAAAGCTGGGG
CTCCGTCTGCTCCCCACCATCCGCGCGTCCATTGATGCTGTGGGATTGCC
GGGACCGGCATTTGCCTTCGCTGTGGCAGCGATGCTTCGCTTTCTGACCC
CGTGCGGTCCCCAACCTCGCCTCGCGCCGAATGTTTTCATGGGAAGCATG
GATCCTAAGCCTCAAGCCCAACCCACCGAGGACAATCCCAAGCGCGCGAA
GCGCTCCAACGGCACTGAAATTGTCTACGTGGGAGATCTTACGGCCGATT
TTGAGGCGGGCACATATTCTTtcagggacggggagggcacgGTGCCCCGG
TTGCTGCAGGCGGCCCAGGCGGCTGCTGGCGCCGTGGGACTGGCGGATGA
GGGTAAGGCAGGTCGGATAGCAGTGTTGCACTCGGCAGTGAGCAAGGTCC
TGAGTCTTCAAGCAGGGCTAGACTCCGTCGCGGCGACGCCCTTCGTGTCC
TTGGTGGCCGCCTATTATGTGAAAATGGTCGACGGGGCTCCGTGCATGGA
GGTGCTTCGACccatcgtggaggaggcaatcaGCATGAAAAACATCCCGG
TTTCGGCACGGGAAGACATGGGCACGGAGCTGATGCGTCCGTTGCGCCCG
GGGGAGATCGCCCGTGTCGTGAGGGATGAAATGGAGAGAGTCCAAGTGGT
TGACTTGCACACCCAcctctttccgccctcccacggGGACCTGATGCTCT
GGGGCATCGACGACCTCCTCACCTACCACTATTTGATCGCGGAGTACTTT
CAGACCGCCCCCCGGGCCATGGCTCcggcctctttcttcgcacGGCCCAA
GGCTTTCCAGGCAGACATGATATGGGCCGCCCTTTTCGTCCAACGGTCTC
CTCTGTCGGAGGCATGCAAGGGGGTTTTGACCACCCTGGAAAAGTTGGGC
CTGCGACAGGAGCTTCGTGCTCGAGATCTCTCGGGCATTCGGAGGTGGTT
CGCGGAGCAAGACCCCGATGCATATTGCGAGAAAGTGTTTAGCCTGGCGG
GCGTCAAGTATTGTGTCATGACCAACATCCCCTTCGACCCCACAGAAGCT
AAGCATTGGCGCCCTGCCAAGAAAGCCTACACGCGACGCTTTCGCTCGGC
GTTGCGGGTGGATCCGCTACTCAAAGGTGACTGGGAGACTGTGTCGGCGT
GCTTGACAGCCGCAAATTACCCGCAAACGCTGGAAGGTGCCAGGCAATAC
CTGCGGGATTGGGCGGAGACGATGCAGCCGGAGTATCTGATGGCATCCAC
GCCCCACGACTTCCAATAcgcaggaaaagaaggggatggaggatcATGTC
AGAGCAGCAaagatggaaagaaaggtgGTCAGGAGGGTATCGGGCAGGGG
TGCGGTGTAACCATGATCGACAAGTCTCCCAAAGGAGCAGAATTACTGGA
AAAAGTCCTTATTCCAGTCGCAGAGGAGCTGTCTTTGCCCATCGCGATGA
AGTTAGGCGCACATCGTGCTGTGAACCCCAGCCTCGGCACCGCTGGAGAC
GGATTGGTCGCAGCGGACGTCGGGgatctccgccgcctctgtACGGCTCA
CCCGCAGGTCAAGTTCCTGGCCACGTTCTTGGCGAGGGTCAGTCAGCACG
AGGCAGCAGTGCTCGCCAACAAGTTTCCCAACTTGCATTTGTACGGCTGT
TGGTGGTATTGTAATAACCCGAGCATCATTCGAGAGATCACCGCCATGCG
GTTAGAAATCTTGGGGACGGCTTTTACGGCGCAGCATTCCGACGCCAGGG
TCCTTGATCAACTAATCTACAAGTGGTCACACTCTAGGCGAGTTATAGGC
GAGGTGTTGGCAGGAGAGTACGTGTCATTGGCACAGACAGGATGGAAAtt
gacgagggaggaagtgaggagAGATGTTGAGAGATTGCTTGGGGGCGCTT
ACGAGGAATTCATGCAAAAATAAAAACATagaagggtgggggggggcatg
tgAAAGGAAGTAAATAGAGAGCTGGTTTGCATAATGAAAAATTGCAAAAG
CTGTACCAGCCCGTATCGACCCCAGGCCAATGGTCAGACAGGGAGGGCCA
ACCAAACCTCTCTAGGCATGCTCTCCATGTTTTCCGAGGAAGTCGACCGG
GACTGGGACACGCATATACCGTCATATATTTTTGCTCATAAGACGAGCGT
AAATCCCAGTTTCAATGAAACTCCGTTTTATTTGATGTCCGGACAGGACC
CTCAATCACCGACGGGCGTGCTCTTTGATGGCCCCCAACATCGGTAAGGG
CAGTACAGACAACTTCTTTGACCGATGTATTCTTGGTTCTTTAATGTAGA
TGAGAAAGTTCACCGATCGATTTTAGAAAAAGCACCATCACCTCA

Coding sequence (CDS) from alignment at CM002459.1:944702..948196+

>rna2678 ID=rna2678|Name=rna2678|organism=Nannochloropsis gaditana|type=CDS|length=2967bp|location=Sequence derived from alignment at CM002459.1:944702..948196+ (Nannochloropsis gaditana)
ATGGAGCCTCTCACAAGAGGCTCAAGTCTAGCAGAAGCCTCATGTGTTTG
CTTGGGAAGTGGGCGTTTCTTGCGGGCTGTTCTGGTCCCCGCCGTGGAAG
CTGCTGGCCTCAAAAGCATCGTATTCCAGACCCGTGGTAATTCCTTCCTA
TCCATGATGTACGGTCCgcgaaggagcaagggaagcTACGAAGTAGACAC
GGTGGAGTTCGACGGACGTACACTGACCACTAGTCACCCTATCATTGCGG
CGGGTACATTGGGAACTGCTGAGGGGCAAAAAGCCTGGGCGGCCCTACCC
GCCCAACTGCCCCATCTGCGGGTCATTGGCGTCGGTGTCACAGAGGCAGG
CCTGGCACCAGGCACCGCTGCCATGAAAGATCTGTGTCAATTTCTGTATG
CATGCTTTAAGGCAGACATACAAGGGCCGTTGAGCATCATCAACACGGAC
AATGTACCTGGCAATGGGCCCAAAATTCGTTCTTTCGTAACGGAACCTAC
ACAGCTTTCAAAAGTTACAGCGTTGCCGGAAACTTcgaaggaaatggaag
atttcctctcttttcttgaTAATAAAGTGGTGTTTCACAGCACGATGGTT
GATCGGATAACCTCTCAGCGGGTCGGAGACGGAGACGTCCCTCGTGCCGA
ACCCCTTCCCACGAAAGCCTTGGTCATCGAGGACCTCGGAAACGTCTTAC
CGGCTGCCCTTGAAGAAGCCCCTGGCGTGGTGATTCGGCGGACAGCGGGT
GAGATCGAAATTGACCACAGCCTCAAACTTCGCGTCGCCAATGCCATCCA
CACGGCTATGGTCTACTGCATGGCCCTGTCCCGGATGCCGGACACCTCCG
CCTGCATCGGCCACCCATTGATCATGCCCTACATCCAAGCCCTCTACGAG
CAAGACATCGTCCGCATGACATCTATGGGCATTCCTCTTGCCGAAGTCCA
GAGCGTATACGACGACTGGGTCCGTcgcctccagcacccgcAGTTTGGCC
TCGGCTGCTTGTTTGTGAGCCAAAATGCCTCCCAAAAGCTGGGGCTCCGT
CTGCTCCCCACCATCCGCGCGTCCATTGATGCTGTGGGATTGCCGGGACC
GGCATTTGCCTTCGCTGTGGCAGCGATGCTTCGCTTTCTGACCCCGTGCG
GTCCCCAACCTCGCCTCGCGCCGAATGTTTTCATGGGAAGCATGGATCCT
AAGCCTCAAGCCCAACCCACCGAGGACAATCCCAAGCGCGCGAAGCGCTC
CAACGGCACTGAAATTGTCTACGTGGGAGATCTTACGGCCGATTTTGAGG
CGGGCACATATTCTTtcagggacggggagggcacgGTGCCCCGGTTGCTG
CAGGCGGCCCAGGCGGCTGCTGGCGCCGTGGGACTGGCGGATGAGGGTAA
GGCAGGTCGGATAGCAGTGTTGCACTCGGCAGTGAGCAAGGTCCTGAGTC
TTCAAGCAGGGCTAGACTCCGTCGCGGCGACGCCCTTCGTGTCCTTGGTG
GCCGCCTATTATGTGAAAATGGTCGACGGGGCTCCGTGCATGGAGGTGCT
TCGACccatcgtggaggaggcaatcaGCATGAAAAACATCCCGGTTTCGG
CACGGGAAGACATGGGCACGGAGCTGATGCGTCCGTTGCGCCCGGGGGAG
ATCGCCCGTGTCGTGAGGGATGAAATGGAGAGAGTCCAAGTGGTTGACTT
GCACACCCAcctctttccgccctcccacggGGACCTGATGCTCTGGGGCA
TCGACGACCTCCTCACCTACCACTATTTGATCGCGGAGTACTTTCAGACC
GCCCCCCGGGCCATGGCTCcggcctctttcttcgcacGGCCCAAGGCTTT
CCAGGCAGACATGATATGGGCCGCCCTTTTCGTCCAACGGTCTCCTCTGT
CGGAGGCATGCAAGGGGGTTTTGACCACCCTGGAAAAGTTGGGCCTGCGA
CAGGAGCTTCGTGCTCGAGATCTCTCGGGCATTCGGAGGTGGTTCGCGGA
GCAAGACCCCGATGCATATTGCGAGAAAGTGTTTAGCCTGGCGGGCGTCA
AGTATTGTGTCATGACCAACATCCCCTTCGACCCCACAGAAGCTAAGCAT
TGGCGCCCTGCCAAGAAAGCCTACACGCGACGCTTTCGCTCGGCGTTGCG
GGTGGATCCGCTACTCAAAGGTGACTGGGAGACTGTGTCGGCGTGCTTGA
CAGCCGCAAATTACCCGCAAACGCTGGAAGGTGCCAGGCAATACCTGCGG
GATTGGGCGGAGACGATGCAGCCGGAGTATCTGATGGCATCCACGCCCCA
CGACTTCCAATAcgcaggaaaagaaggggatggaggatcATGTCAGAGCA
GCAaagatggaaagaaaggtgGTCAGGAGGGTATCGGGCAGGGGTGCGGT
GTAACCATGATCGACAAGTCTCCCAAAGGAGCAGAATTACTGGAAAAAGT
CCTTATTCCAGTCGCAGAGGAGCTGTCTTTGCCCATCGCGATGAAGTTAG
GCGCACATCGTGCTGTGAACCCCAGCCTCGGCACCGCTGGAGACGGATTG
GTCGCAGCGGACGTCGGGgatctccgccgcctctgtACGGCTCACCCGCA
GGTCAAGTTCCTGGCCACGTTCTTGGCGAGGGTCAGTCAGCACGAGGCAG
CAGTGCTCGCCAACAAGTTTCCCAACTTGCATTTGTACGGCTGTTGGTGG
TATTGTAATAACCCGAGCATCATTCGAGAGATCACCGCCATGCGGTTAGA
AATCTTGGGGACGGCTTTTACGGCGCAGCATTCCGACGCCAGGGTCCTTG
ATCAACTAATCTACAAGTGGTCACACTCTAGGCGAGTTATAGGCGAGGTG
TTGGCAGGAGAGTACGTGTCATTGGCACAGACAGGATGGAAAttgacgag
ggaggaagtgaggagAGATGTTGAGAGATTGCTTGGGGGCGCTTACGAGG
AATTCATGCAAAAATAA

Synonyms

Publications