rna2670, rna2670 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2670
Unique Name	rna2670
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4611
Alignment location	CM002459.1:924984..927327 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 5
Orig transcript id	gnl\|cribi\|Naga_100008g39.7908.mrna
Orig protein id	gnl\|cribi\|Naga_100008g39.7908
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:924984..927327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g39	gene2553	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2670	rna2670-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28016.1	cds2662	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:924984..927327+
coding sequence from alignment at CM002459.1:924984..927327+

mRNA sequence

>rna2670 ID=rna2670|Name=rna2670|organism=Nannochloropsis gaditana|type=mRNA|length=4611bp
ATGTATCGTGCGCTGCGTTCGCCATTGGGATCGCGCGCCGCGGAGGTGCT
CCAATTGCATCATGTGGGGGCGTCGAAGCGGTTGGTCCCTGCTGGCTTTT
CTAGCTCCTTCAAGAATCAGGGCATTAAAAGTGTGTTGTTGCGTCGTTTG
CTGGCGACACAGTCTGATGGAGCAGCGTCGCCCCCCACAAAGCGTGCGTG
GTTGGTTTTGGAGGACGGCACCCGCCTGCAAGGGTACTCCTTCGGGGCAG
ACAAGCCCATGAACGGGGAGGTTGTCTTCTCCACAGGCATGGTCGGTTAC
ACAGAATCATTGACCGACCCTTCTTACCGACGACAAATTTTGACTCTGAC
GTCGCCCATGGTGGGCAATTACGGTGTGCCTGACCCGAAGGTGTTGGACG
AGCTTGGCTTGCCCAAGGCCTTTGAAAGCTACAAGATCCACGCGGCAGGC
TTGGTCGTGCAGGATTATTCCCACCACTACTCGCACTGGAACGCACATTT
CTCATTGGGAGACTGGTTGAAACAAGAAGGTATCCCAGCCATATGCGGAA
TCGACACGAGGATGCTGACGAAGAAGATCCGTAGTCATGGCGCCATGCTG
GGAAGGATTGAATTCGAGGACGGGCCCAAGCCCGAATTGGAGGATGTGAA
CAAGAAGCACCTTGTCGCCGAAGTCTCTGCCCCGGAGGCCAAAGTGTACG
GGAAAGGGAATCCCATCAAGATCTTGGCTGTGGATTGCGGAATCAAGTAC
AACATTATCCGGCATCTGGTTAGGAAAGGCGCTGAGGTCAAGGTGGTGCC
ATGGGCCCATGATCTCGTCTCGGAGATGGCACACCACCAGGGCCTCTTCC
TGTCCAATGGCCCGGGCGACCCGAGCATGTGCACCACCACGGTGCAGCAC
CTGAAAGAGCTCGTAAATGATCCGAACTTCACGAAACCAGTCTTCGGCAT
CTGTTTGGGAAACCAGTTGCTTGGGCTCGCGGCGGGGGCGAAAGCGACGA
AGCTGCCTTTTGGAAATCGAGGGCAAAACCAGCCGGTGGTAAACATGCTC
ACGGGCAAGGCCTTCATCACGCCGCAGAATCACGGCTACGCCATCGACGA
CACCACCTTGCCCACACCGTGGAAGCCGCTCTTCCGGAACCTGAATGACC
ACTCCAACGAGGGGATTCTACACACACAAAAACCGATCTTCTCGGCCCAG
TTCCATCCGGAGGCGGCCGGTGGGCCCACCGACACCGAATTCTTCTTCGA
TGTCTTCTTGGACACGGTGCGCGAGCAGAGGAAAACCATCGTCTTCCCTC
CTGTCAAGCCCACGCCCGCGCGCCCGGAGGTCGCGAAAGTGTTGCTTCTG
GGCTCAGGAGGGCTGTCCATTGGGCAGGCCGGAGAATTCGACTACTCTGG
GGCCCAAGCCATCAAGGCCTTGAAGGAGGAGGGGCTGGAGGTGGTGCTCA
TGAACCCGAACATCGCCTCGGTCCAGACCAATGTGGATGCCAAGTCGGAC
GCCAAGGCCGATCAGGTCTACTTCCTCCCGGTTAACCCGGACTACGTCGA
GCAGGTGATCAAACGGGAGCGACCCGATGGACTGGTCCTCTCCATGGGCG
GGCAGACGGCCCTGAATTGTGGCCTGGCCCTGCACCATAAAGGGATCCTC
GCCAAGTACAACGTAAAAGTGCTGGGCACGCAAATTGACGCGATCGAGGC
TTCTGAAGATCGACAGCTATTTTCTGACAAACTGAACGAAATCAACGAGA
AAATCGCTCCGTCGATCACGGCGTCCACCATTGCGCAGGCTTTGACGGCG
GCGGAGAAAATCGGTTACCCTTGCATGATTCGCTCCGCCTTTGCTTTGGG
GGGACTGGGATCGGGGATCTGCCGAAACCCGGAGCATTTGGAGGAAATGG
CCGCAAAGGCCTTGAGCTTGTCGAGCCAGATCTTGGTGGAAAAATCCCTG
AAGGGATGGAAGGAGGTGGAGTACGAGGTGGTGCGGGACTCGGCCGACAA
TTGCATCACCGTCTGCAACATGGAGAACTTCGACCCCCTGGGCGTCCACA
CGGGGGACTCCATCGTGGTGGCACCCTCGCAAACTCTCTCCAATGAGGAG
TATCATATGCTTCGGGAGACCGCCTTGAAGGTAGTCCGGCATTTGGGGAT
CGTAGGAGAGTGCAACATCCAGTACGCGCTCGATCCCTACTCTCTCGACT
ATTGTATCATCGAAGTGAATGCCCGGTTGTCTCGGTCCTCTGCCTTGGCT
TCAAAGGCCACGGGATACCCTTTGGCCTTTGTGGCTGCCAAGCTCTCGCT
GGGCATCACCCTCCCGGAGATTCAGAACAGCGTGACAAAGAGCACACAGG
CGTGCTTCGAGCCGTCTCTGGACTACATTGTTACCAAGATTCCGCGCTGG
GATCTCAACAAATTCCAAGGCGTGGCGACGGAAATCGGCTCTTCCATGAA
ATCGGTGGGGGAAGTGATGGCGATCGGGCGCACGTGGGAGGAATGCATCC
AGAAGGCGATGCGCATGGTGGACCCCGCCATCGAGGGCTTTCAAGTCCGA
AAGCGTTACGACGACGATTCCGCGTTGCTCTACGAGTTGACCAACCCCTC
CGATAAACGCCTCTACGCCATCGCGCAGGTCTTTGCCGAGAAAACCAAGA
CCGTGGAGGAGATCCACGAGCTCACGGCCATCGACCACTGGTTCCTTCGC
CGCCTGGAGCGAATCTCCAAGCAGCGCGACGTCCTGCTCAAGCACGGGAA
CGGAAAAGGGGCCTTGGACTCGCTTTCCGCGGAGGAATTGGCCATGTCGA
AGAAGCTGGGATACTCAGACCGGCAATTGGGGGCCTTGCTGGGCACTACC
GATGACGCAGTGCGGGCAAAGCGGGAGGCCGCAGGCATCGTTCCCTCTGT
GAAGCAGATCGACACCTTGGCGGCTGAATACCCGGCCAAGACCAACTACC
TCTACTGCACGTACAACGGGTCCGAGGACGACGTGGTCACGGGGGAAGGC
GGGGTCATCGTCCTGGGCTCGGGGACCTACCGGATCGGCTCCTCGGTCGA
GTTTGACTGGTGCGGTGTGTCGGCCATCCGGGCCTTGCGCGGGATGGGGT
ACAGGACCACGATGGTGAACTACAACCCGGAGACGGTCTCCACGGACTAC
GATGAATGCGACCAGCTTTACTTCGACGAGCTGAGCAAGGAGCGTATCGT
GGACATCTACCAGCGCGAGGGGGCTCAGGGCGTGGTGGTGTCCGTCGGGG
GACAGATCCCCAACAACTTGGCCATGCCGCTGCACAAGGTGGGCGTAAAA
ATCATGGGCACCACCCCGGAGATGATCGACCAAGCGGAGGACCGCTTCAA
ATTCTCGGCGTTGATGGACTCCCTCGGGATCCAGCAGCCGGCGTGGAAGG
AGTTGGCGGACACAAAGTCAGCCCTGGCCTTTGCCAAGCAAGTGGGTTAC
CCCGTCTTGGTCCGCCCCTCCTACGTGCTGTCTGGGGCGGCCATGTCGGT
GGCATTCAATGACGAGGCCCTCCTGCGCGTCCTCAGCGTGGCGGCTGACG
TGTCGCAGGAGCACCCCGTGGTCATCACCAAGTTTGTGAACGGTGCGAAT
GAGATCGAGATGGACGCGGTCGCCCAAGACGGGGTGGTGATGGCGGCTGC
GATGCACGAGCACGTGGAGAATGCAGGCGTGCATTCCGGAGACGCCACCT
TGATGTTGCCCCCGCAGCGGATCTCTGCGTACACGGCCATGCGCGTGAAT
GAAGCTACCCGGAAGATCGCCAAGGCACTGAACATCACCGGACCCTTCAA
CATGCAATTCCTTTCCAAAGGGAAGGACGTGAGCGTCATCGAGTGCAATC
TCCGGGCCTCTCGCTCCGTGCCCTTCGTCTCCAAGACTATGGGCGTGGAC
TTCATTGAGGCAGCCGCGCGTTGCATGGTAGGCGAGGACGTGACGGGCAT
GAATCTTCCCCAGCTGGGGCAGACGGGCCGACCCAAGGGCTACGTCGGAG
TGAAGGCGCCCATGTTCTCCTTCACCCGCCTGCGTGGCGCCGACCCGGTG
CTCGGGGTGGAGATGGCGTCGACAGGGGAGGTCGCCTGTTTCGGGGCCAA
CATCCACGAAGCCTTCTTGAAGGCCCTCATCTCCACGGGCTTCAAAGTCC
CGGAGAAGAACATCCTCTTCTCTGTGCAGGACTCCCTGCGCGACGACGTC
ATCCACGCGGCTTTCCAGCTCCACACCCTCGGCTATAATCTCTACGCCAC
GCGGGCCACGCACGACTTCCTCCTGTCCTGCCACGTCCCTTGCCACCTCC
TCCACTACCCGAACCAGCCCGAAAAGCACCCGAACGTCTTGGAGCACTTG
AAAAATGGGAAAATAGACCTGGTCATCAACCTTCCTACCCCAGAGAGCAA
GCAGGTGGAAAACAATTACCTGATGCGTCGAACCGCGGTGGACTTTGGCG
TTCCTCTGTTGACCAACATCCATCTGACCAAGCTGTTCGCAGAAGCGATG
ACCAAATACAAGAAAGGAGAGCTGATCGGTATCGAGTCCCAGAACCTGTT
CGATTACTACAACGCCGAGGCCCCCGAAGAGGCGTGGACCTCGCCTTCGG
AGTTCCATTAA

protein sequence of rna2670

>rna2670-protein ID=rna2670-protein|Name=rna2670|organism=Nannochloropsis gaditana|type=polypeptide|length=447bp
MMNIAGLNPVEDANYRYKMPRILAKVEGRGNGIKTVVINMKEVAQALHRM
PAEVTKFFGTELGAQTTYREETERAVVNGAHTAPALQTSLCRYIQGFVLC
PSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKAAKE
GKGTKEAKEKKKKDRSKADAEDDDLDEDGGAEGEEKEKKKKKKKDKEEKE
KKKKKKREKREKASEAGSSDGDGNGMGTSNGKTSKQGSSDDDEGEGEEEE
EEEEGEVVARLDNLAVEDATALAGAIGRLQHFLNSNPSAGASQILEEIRM
IATFSALPVEERPFLFVQAAFGPEAGRENAIRRHQKVLKGLMLSVDEEMY
QRRLIGVMEHLCAVTHAESLHKWFPVLLKQLYDEGVVDEEVFLEWAEEEG
PTEFTRREVTPAMVESLRKEAGKFVTWLTEAASDSEEESGGEESEEE

mRNA from alignment at CM002459.1:924984..927327+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2670 ID=rna2670|Name=rna2670|organism=Nannochloropsis gaditana|type=mRNA|length=2344bp|location=Sequence derived from alignment at CM002459.1:924984..927327+ (Nannochloropsis gaditana)
GAGGGTGGTGCATGTAAGTTTAGAGGAGCGCTGCGCATCACACGGCTTGT
TCAGGCGCCGCTCACTTCATCGCACGTCTCCGTGTCACTCATCTCGACGA
TCACCACGACATGACACACCAACACAGGCAAGCCACCCACAAGTCGCACC
CAACTCAAGGTCTGCAAACTTGTGCATGCGTTCGGACGCGCTCAGATTGA
GAAGAGACGGTGTGCCCGCGCGTTCCACGCCCCCCTGTCATCATTACCAC
CATCACCATTTCCAGCAGCATTTGCGCTATCTCGTCTACCCGCTAACCCG
GGACCTAAGAATAGGAGCCATTAGCACTCAACGCAGCAAGAGAGGGGATC
GCCATAGATACCGATCGAGTGGTCCCAACCCGGGCGTGTGAGCAACCATC
ATTAAACATTCGTCGGGTAACGCAAAACAGACTCGGCACACCTCGATATA
GCCACTGTCCAGGCGTCAAGTGAGCACTACGCACCCCGTGAAAGATGATG
AACATTGCGGGCCTCAAcccggtggaggacgccaACTACCGGTATAAAAT
GCCCCGGATTCTGGCCAAGGTGGAGGGCCGTGGGAACGGGATCAAAACCG
TGGTCATCAacatgaaggaggtggcCCAGGCCCTGCACCGAATGCCCGCG
GAGGTGACGAAGTTCTTCGGCACGGAGCTGGGCGCGCAAACGACGTACAG
GGAAGAGACGGAGCGGGCGGTGGTGAACGGAGCGCACacggcgcccgccc
tccagaCGTCCCTCTGCCGCTACATCCAAGGCTtcgtcctctgcccctcc
tgcggGCTCCCGGAGACGGCGTACAAGATCAAGGGCGGGGTGATCTATCA
GAAATGCGACGCCTGTGGAGAGAAGAGCATGTGCGACATGAGCCACAAAC
TGACCACGTTCATCATCAACACTCACAAGAAAGCggccaaggaagggaag
ggcaccaaggaggcgaaggagaagaaaaagaaagaccGCTCGAaggcgga
cgcggaggacgacgacctggacgaggatggtggggcggagggagaggaga
aggagaagaagaagaagaaaaagaaggacaaggaggagaaggagaagaag
aagaagaagaagcgggagaagagagagaaggcctCCGAGGCAGGGAGCAG
CGACGGGGACGGGAACGGGATGGGGACCAGTAACGGAAAGACGTCCAAAC
AGGGATCATcggacgacgacgaaggggagggagaggaggaggaggaggag
gaggagggagaggtggtggcgcgGCTGGACAacctggccgtggaggacgc
gacggCCTTGGCGGGGGCCATCGGGCGTTTGCAGCACTTTCTGAACTCGA
ACCCTTCGGCTGGAGCTAGCCAGATCCTGGAGGAGATCCGCATGATTGCg
accttctccgccttgcccgtggaggagcgcccctttctctttgTGCAGGC
GGCCTTTGGTCCCGAGGCGGGGCGTGAGAATGCCATCCGGCGGCACCAAA
AGGTCTTGAAGGGCTTGATGCtgagcgtggacgaggaaatgTACCAGCGG
CGCTTGATCGGGGTGATGGAGCATCTGTGCGCTGTCACGCACGCGGAGAG
CCTGCACAAGTGgttccccgtcctcctcaagcaGCTCTATGACGAGGGCG
ttgtggatgaggaggtgtTCTTGgagtgggcggaggaggagggccccaCG
GAGTTcacgcggagggaggtgacgCCGGCGATGGTGGAGTCTctgaggaa
agaggcgggCAAGTTCGTGACCTGGCTGACGGAGGCGGCCTCGGActcgg
aggaagaaagtggaggggaggagagtgaggaagagTAGGGGGGAAGTCAG
GAGGATAGGGCAGGCGTaggaagagggcgacggggtcacgaggaagtggg
gggggatgataggagcgaggagagagggatggagtATCGTTCAAGCGTTA
TGAAGATGCCAGAGTGAGAGCCTGCTCGATCATAAACAATGGCTGTTTCG
ACGGGATCAAACGGTGGCTATGTCGACGGGGGTTTTAAGTGAATCGTGTG
CGGGAGGCAGCAGGGAGAAGCGCTGGGtgtggcggggggaggggaaggaa
gggggggggtggagggcgtgggatCCGCAGCTGGGTCCGTCGCGGTAGTG
GCATATTTGGAAAGTGGAGCTGGGAGAGAGAGTAACATGAGAGGAAGTTT
CCACGAATGTCTTAGTCGACAAATGCCTCGCGTCACTCGAGGTGACCCAG
CGCAGGTTTCACGGGCATGGTGGGCGTGGACGCCTGAATGACGCTCTTAC
TATTGCTTCTTTCTGGCCTTTGGAATAACAATTCATACGTGTCC

Coding sequence (CDS) from alignment at CM002459.1:924984..927327+

>rna2670 ID=rna2670|Name=rna2670|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at CM002459.1:924984..927327+ (Nannochloropsis gaditana)
ATGATGAACATTGCGGGCCTCAAcccggtggaggacgccaACTACCGGTA
TAAAATGCCCCGGATTCTGGCCAAGGTGGAGGGCCGTGGGAACGGGATCA
AAACCGTGGTCATCAacatgaaggaggtggcCCAGGCCCTGCACCGAATG
CCCGCGGAGGTGACGAAGTTCTTCGGCACGGAGCTGGGCGCGCAAACGAC
GTACAGGGAAGAGACGGAGCGGGCGGTGGTGAACGGAGCGCACacggcgc
ccgccctccagaCGTCCCTCTGCCGCTACATCCAAGGCTtcgtcctctgc
ccctcctgcggGCTCCCGGAGACGGCGTACAAGATCAAGGGCGGGGTGAT
CTATCAGAAATGCGACGCCTGTGGAGAGAAGAGCATGTGCGACATGAGCC
ACAAACTGACCACGTTCATCATCAACACTCACAAGAAAGCggccaaggaa
gggaagggcaccaaggaggcgaaggagaagaaaaagaaagaccGCTCGAa
ggcggacgcggaggacgacgacctggacgaggatggtggggcggagggag
aggagaaggagaagaagaagaagaaaaagaaggacaaggaggagaaggag
aagaagaagaagaagaagcgggagaagagagagaaggcctCCGAGGCAGG
GAGCAGCGACGGGGACGGGAACGGGATGGGGACCAGTAACGGAAAGACGT
CCAAACAGGGATCATcggacgacgacgaaggggagggagaggaggaggag
gaggaggaggagggagaggtggtggcgcgGCTGGACAacctggccgtgga
ggacgcgacggCCTTGGCGGGGGCCATCGGGCGTTTGCAGCACTTTCTGA
ACTCGAACCCTTCGGCTGGAGCTAGCCAGATCCTGGAGGAGATCCGCATG
ATTGCgaccttctccgccttgcccgtggaggagcgcccctttctctttgT
GCAGGCGGCCTTTGGTCCCGAGGCGGGGCGTGAGAATGCCATCCGGCGGC
ACCAAAAGGTCTTGAAGGGCTTGATGCtgagcgtggacgaggaaatgTAC
CAGCGGCGCTTGATCGGGGTGATGGAGCATCTGTGCGCTGTCACGCACGC
GGAGAGCCTGCACAAGTGgttccccgtcctcctcaagcaGCTCTATGACG
AGGGCGttgtggatgaggaggtgtTCTTGgagtgggcggaggaggagggc
cccaCGGAGTTcacgcggagggaggtgacgCCGGCGATGGTGGAGTCTct
gaggaaagaggcgggCAAGTTCGTGACCTGGCTGACGGAGGCGGCCTCGG
ActcggaggaagaaagtggaggggaggagagtgaggaagagTAG

Synonyms

Publications