rna2666, rna2666 (mRNA) Nannochloropsis gaditana

Overview
Namerna2666
Unique Namerna2666
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1438
Alignment locationCM002459.1:914615..915604 -

Link to JBrowse

Properties
Property NameValue
Productphycoerythrobilin:ferredoxin oxidoreductase
Orig transcript idgnl|cribi|Naga_100008g33.7876.mrna
Orig protein idgnl|cribi|Naga_100008g33.7876
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:914615..915604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g33gene2549Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27984.1cds2658Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2666rna2666-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2666 ID=rna2666|Name=rna2666|organism=Nannochloropsis gaditana|type=mRNA|length=1438bp
ACAGCTAGTTAGCGAGCTCCGAGGTTGCAAGCGTGAGCTTCTGGTTGACC
CTGTTTTGTAGTGTACAACGACGCCTAAAAATGCTTTACAACAAGAGTGG
CTTTGTTGAGGCTGTGTCAATACACTTTTGATTTTTCAAGGTGTTATTTG
GCTGTCACTTACTTTCCAGGCGGAAAAGGGCACTGACCTCTGTACAGCTT
CAATTGCGGTTCCAACGACAGAAGATGAAGCAGAACATTTCAACAACTGC
GAGGGTGCTCTGCGTATTCTTCGCGACAATCGACATTGTCGAATGCTTTC
ATGCCATATCATCCGGCTCCGCAGCCAAAAGCATTGGAAATATTGTGCTA
CACTCGTCTGCATCCTCCACTCCTTCCTTCTCCTCCGCCTCGCCCACTTC
CGCAAGTTCCTTATTTTCCCCGCCCTCCTCCCAATCCTCCTCCTCATCTT
CTTCTTCGTTCTCTTCCTCCGTCGCCTCTTCATCTTCCTTCGCGCAGTCC
GACCGCCGCCAAGCACTTGCCAGCTTAACCTCCTCTATAGCTATCGCAAC
ATGCGCTGCAGTCATTACATATACCCCTCTTTCTCCTTCCAATGCCGCTA
CAAAAAATGCCAAAAGGCTACCGTACCCCGCAGAAATAACGGCAAAAGCA
TTTTTCGATGTGCGTATAACGGGCTTCGTAACCGGAGAGGAAAAAGCCAC
GAGCGAGGATTTCGTAGGACGCATGGTTTTTGGTTTGTTCGGTAAGGCAG
CCCCAATAGTGGTTGGGGAATTCATAAAATACACAAAAGCTCCCTATGGC
GGAAACTTTCCAAGCTATGCATTCTCAAGCCTCACGAAGCGCACGCCAGG
CGTATCTGTGGAAGCTGGACGCATCAAAGGCCTGAAAGAGATCGAAATTG
CAGGGACGCGAGAATACGAGTACGGAGACCAGCTGCTGGGTGCTAAGGGC
ATGGATGAGCCCACGCTAGCCCTGAAGCACGATCGAAGAGGCTTATTGAC
GAAGAGTAGCACCCAGGATGCCGTGGATCCAGTTTTTGAAATGACTTTGG
GCCCCCAACCAGCTTTGGACAACGGGGACTCAATTGTCTTCGGGATCCTC
TTGGAGGGACAGGAGGCGCTGGATGCGATGGAAAAGGTCCCAATATACAC
CTACGAGAGCGCAGGGGAACAGCCAGAGGCCTTGAACAGCCTCTTCACAA
ACCAGAAGAAGCTTTTCCTGTCCATGGCCAAGTCACTCAATGACGAACGG
GCTGTGAACCGGCAAGGGTCCTTCTTGAAGAGGGTGGAGGTCTTGAATGT
GGGCCTCCTGTGACCGGGACGGAGCCACGTAGGGCAAGAGCAGAAAGCAA
GAGTACACTACCCTCACAAACAAGGCCCGTGCCTGACGCTTTCCGGCGTG
CTTTGTTGGTTATTTTCTTCGCTCGATCTTTACATGCT
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protein sequence of rna2666

>rna2666-protein ID=rna2666-protein|Name=rna2666|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MVILPHHAPHSSSLTILLLITISHSRAFYILAPLVERSRTVLSAVSSDAP
PAPSSNRPVVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPA
KGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDS
SYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALL
PSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEH
ASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIY
EVLFEQADRELEDDGGITVEAVRSGGTGG
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mRNA from alignment at CM002459.1:914615..915604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2666 ID=rna2666|Name=rna2666|organism=Nannochloropsis gaditana|type=mRNA|length=990bp|location=Sequence derived from alignment at CM002459.1:914615..915604- (Nannochloropsis gaditana)
ATGGTCATATTACCCCACCATGCGCCACATTCAAGCTCCCTGACAATCTT
ACTTCTCATTACGATCAGCCATTCGCGGGCATTTTATATTTTGGCGCCTC
TCGTTGAGAGATCACGCACAGTTTTATCGGCCGTCTCCTCCGACGCGCCT
CCTGCTCCGTCTTCCAATAGACCAGTCGTGATTTACGAAGGCTTTTGGCA
TGAAGCCAAGGCCATGATGGACGCTCGTCAAAGCTCTTTGCCTTGGAAAT
CACAAACAATTCCTTTTGACTTACAGCGCAAGGTATGTACAACACCAGCC
AAGGGCAAGCGTCTCGAAACAGTCACAGTTGCTGAGGTGTTTGCCTACAC
TGTCCCCGGCCGCATTCGCCAAGCTCGGGCAGCCGTCCTGTCAACCATTC
CTGAGGAAGCCCCTCCTAAAGTTCTGAATTTTGTCGTCTTCCCAGATTCT
TCGTACGATTTGCCGATATTCGGCGCAGATTTCGTTTCCTTGCCTGGCGG
ACATTTGGTAGTGTTGGACTTTCAGCCGGTATCAAGCACATCCTTGTCGG
TGGCGGAAAAAGCTCTACGCGACATACATGCTCATTACACCGCATTGCTG
CCAAGCCATGGGGAGATTCCAGACGCAGCTCGGTCATTTTTTTCGCCTTA
CTACATGTTTATCAGGGTGGAAGGGGACGCGCTGGTGGAGACGACCGTGC
TTGCGGCTTTTAAAGCGTACTTTTCGGCATATCTTGACCTGGTCGAGCAT
GCCTCTCCCATACCCGTCGAAGAAACATCTAGATTATTGGAGGTCCAAGA
GGGACACCGCAATTATGCGACTTATCGGGCAGTGAATGACCCGGCGCGAG
GGATGCTTACCCGGATGTATGGGCGTTCGTGGACAGAGCGGCTGATCTAC
GAGGTGCTGTTTGAGCAAGCAGATAGGGAGTTGGAGGATGATGGAGGAAT
AACGGTGGAAGCTGTGAGGTCTGGGGGTACGGGGGGCTGA
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Coding sequence (CDS) from alignment at CM002459.1:914615..915604-

>rna2666 ID=rna2666|Name=rna2666|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002459.1:914615..915604- (Nannochloropsis gaditana)
ATGGTCATATTACCCCACCATGCGCCACATTCAAGCTCCCTGACAATCTT
ACTTCTCATTACGATCAGCCATTCGCGGGCATTTTATATTTTGGCGCCTC
TCGTTGAGAGATCACGCACAGTTTTATCGGCCGTCTCCTCCGACGCGCCT
CCTGCTCCGTCTTCCAATAGACCAGTCGTGATTTACGAAGGCTTTTGGCA
TGAAGCCAAGGCCATGATGGACGCTCGTCAAAGCTCTTTGCCTTGGAAAT
CACAAACAATTCCTTTTGACTTACAGCGCAAGGTATGTACAACACCAGCC
AAGGGCAAGCGTCTCGAAACAGTCACAGTTGCTGAGGTGTTTGCCTACAC
TGTCCCCGGCCGCATTCGCCAAGCTCGGGCAGCCGTCCTGTCAACCATTC
CTGAGGAAGCCCCTCCTAAAGTTCTGAATTTTGTCGTCTTCCCAGATTCT
TCGTACGATTTGCCGATATTCGGCGCAGATTTCGTTTCCTTGCCTGGCGG
ACATTTGGTAGTGTTGGACTTTCAGCCGGTATCAAGCACATCCTTGTCGG
TGGCGGAAAAAGCTCTACGCGACATACATGCTCATTACACCGCATTGCTG
CCAAGCCATGGGGAGATTCCAGACGCAGCTCGGTCATTTTTTTCGCCTTA
CTACATGTTTATCAGGGTGGAAGGGGACGCGCTGGTGGAGACGACCGTGC
TTGCGGCTTTTAAAGCGTACTTTTCGGCATATCTTGACCTGGTCGAGCAT
GCCTCTCCCATACCCGTCGAAGAAACATCTAGATTATTGGAGGTCCAAGA
GGGACACCGCAATTATGCGACTTATCGGGCAGTGAATGACCCGGCGCGAG
GGATGCTTACCCGGATGTATGGGCGTTCGTGGACAGAGCGGCTGATCTAC
GAGGTGCTGTTTGAGCAAGCAGATAGGGAGTTGGAGGATGATGGAGGAAT
AACGGTGGAAGCTGTGAGGTCTGGGGGTACGGGGGGCTGA
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Synonyms
Publications