EWM27984.1, cds2658 (CDS) Nannochloropsis gaditana

Overview
NameEWM27984.1
Unique Namecds2658
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:914615..915604 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27984.1
Productphycoerythrobilin:ferredoxin oxidoreductase
Orig transcript idgnl|cribi|Naga_100008g33.7876.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:914615..915604 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
GO:0010024phytochromobilin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0050897cobalt ion binding
GO:0016636oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor
Vocabulary: INTERPRO
TermDefinition
IPR009249Ferredoxin-dep_bilin_Rdtase
Homology
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|585110325|gb|EWM27984.1| (phycoerythrobilin:ferredoxin oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0
Query:    1 MVILPHHAPHSSSLTILLLITISHSRAFYILAPLVERSRTVLSAVSSDAPPAPSSNRPVVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELEDDGGITVEAVRSGGTGG 329
            MVILPHHAPHSSSLTILLLITISHSRAFYILAPLVERSRTVLSAVSSDAPPAPSSNRPVVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELEDDGGITVEAVRSGGTGG
Sbjct:    1 MVILPHHAPHSSSLTILLLITISHSRAFYILAPLVERSRTVLSAVSSDAPPAPSSNRPVVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELEDDGGITVEAVRSGGTGG 329          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|553196288|ref|XP_005856310.1| (phycoerythrobilin:ferredoxin oxidoreductase, partial [Nannochloropsis gaditana CCMP526] >gi|422292749|gb|EKU20051.1| phycoerythrobilin:ferredoxin oxidoreductase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 243.817 bits (621), Expect = 2.915e-78
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0
Query:  108 VTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVE 230
            VTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPD SYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHY+ALLPSHGEIPDAARSFFSPYYMFIRVEGDALVE
Sbjct:    1 VTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDFSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALRDIHAHYSALLPSHGEIPDAARSFFSPYYMFIRVEGDALVE 123          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|754101465|ref|WP_041739787.1| (phycoerythrobilin:ferredoxin oxidoreductase [Calothrix parietina])

HSP 1 Score: 177.563 bits (449), Expect = 1.682e-50
Identity = 104/250 (41.60%), Postives = 141/250 (56.40%), Query Frame = 0
Query:   59 VVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALR---DIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFE 305
            +++Y+ F   A A M +R   LP  +  IP   + K   T  KGK LETV     +A+  P ++RQ RAA    +      +VLNFV+FP  +YDLP FGAD V+LPGGHL+ LD QP+   +    EK  +    I   +   LP  G+ P  A+ FFSP +++ R++   +VET+V AAFK Y  AY+D V+ A PI   +  RL E++  H  Y  YRA  DPARGM  R YG  WTE  I+  LF+
Sbjct:    1 MMLYQPFLDHAIAYMRSR---LPISAYPIPPGFESKSAET-GKGKNLETVLTTS-YAFQTP-KLRQIRAA---HVQGGKSLQVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLFRDNAKYQEKYTQPILPIFEQHKENLPWGGDFPAEAQQFFSPAFLWTRLQDTNVVETSVFAAFKDYLQAYVDFVDQAEPI--NDPDRLAEIERSHLRYLHYRAEKDPARGMFKRFYGEEWTEEYIHGFLFD 239          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|428237147|gb|AFZ02937.1| (Phycoerythrobilin:ferredoxin oxidoreductase [Calothrix sp. PCC 6303])

HSP 1 Score: 176.792 bits (447), Expect = 2.708e-50
Identity = 104/249 (41.77%), Postives = 140/249 (56.22%), Query Frame = 0
Query:   60 VIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAEKALR---DIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFE 305
            ++Y+ F   A A M +R   LP  +  IP   + K   T  KGK LETV     +A+  P ++RQ RAA    +      +VLNFV+FP  +YDLP FGAD V+LPGGHL+ LD QP+   +    EK  +    I   +   LP  G+ P  A+ FFSP +++ R++   +VET+V AAFK Y  AY+D V+ A PI   +  RL E++  H  Y  YRA  DPARGM  R YG  WTE  I+  LF+
Sbjct:    1 MLYQPFLDHAIAYMRSR---LPISAYPIPPGFESKSAET-GKGKNLETVLTTS-YAFQTP-KLRQIRAA---HVQGGKSLQVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLFRDNAKYQEKYTQPILPIFEQHKENLPWGGDFPAEAQQFFSPAFLWTRLQDTNVVETSVFAAFKDYLQAYVDFVDQAEPI--NDPDRLAEIERSHLRYLHYRAEKDPARGMFKRFYGEEWTEEYIHGFLFD 238          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|1105015369|ref|WP_071800992.1| (phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. SynAce01] >gi|1104555456|gb|APD48354.1| phycoerythrobilin:ferredoxin oxidoreductase [Synechococcus sp. SynAce01])

HSP 1 Score: 174.096 bits (440), Expect = 2.426e-49
Identity = 100/252 (39.68%), Postives = 141/252 (55.95%), Query Frame = 0
Query:   62 YEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPV---SSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRV----EGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQ 306
            +E F++ A   + A+ +  P+    IP  +  KV +T   G R + + V          ++RQARAA +   P    P+VLN V+ P+  +DLP FGAD V+LPGGHL+ LD QPV              LR +  H+ ALLP  G IPD A  +FSP +++ R+    E + L+E  ++AAF AY   YLDL+  A+P+   + SR+ +++EG   Y  YRA  DPARGMLTR YG  WTE  I+  LF+ 
Sbjct:    5 WEPFFNHAVTQITAKLALEPYP---IPAGMAEKVGST---GSRAKPIAVTTTSWGVRNDKLRQARAACVDAEPN---PQVLNLVISPEPRFDLPFFGADLVTLPGGHLIALDLQPVLKRDRLHTQAVWSRLRPVFDHFRALLPDGGPIPDEAEPYFSPCFLWTRLPLTAESETLIEGPLMAAFVAYLDLYLDLIAEANPV---DDSRMQQLKEGQLRYLDYRAEKDPARGMLTRFYGEEWTEAYIHGFLFDH 244          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|504987804|ref|WP_015174906.1| (phycoerythrobilin:ferredoxin oxidoreductase [Oscillatoria nigro-viridis] >gi|428239793|gb|AFZ05579.1| phycoerythrobilin:ferredoxin oxidoreductase [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 173.711 bits (439), Expect = 4.454e-49
Identity = 104/250 (41.60%), Postives = 140/250 (56.00%), Query Frame = 0
Query:   59 VVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLE-TVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAE--KALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFE 305
            + +Y+ F   A  ++ AR    P+    IP   +RK   T  KGK+ +  VT +  F  +   ++RQ RAA    +      +VLNFV+FP  +YDLP FGAD V+LPGGHL+ LD QP+   +    +  + +  I   Y   LP  G+ PD A+ FFSP +++ R +    V+TTV  AFK Y  AYLDLVE A   PV ++ RL E+ E  R Y  YRA  DPARGM TR YG  WTE  I+  LF+
Sbjct:    1 MTLYQPFLDYAIPLLKARLDLAPY---PIPAGFERKEALT-GKGKKEQLVVTTSHAFKSS---KLRQIRAA---HVEGGDALQVLNFVIFPQLNYDLPFFGADLVTLPGGHLIALDMQPLFHEAAYQKQYSEPILPIFNKYQKELPWGGDFPDEAKPFFSPAFLWTRPKETEAVQTTVFEAFKDYLQAYLDLVEQAQ--PVTDSQRLGEILEAQRRYIDYRAAKDPARGMFTRFYGEEWTEEYIHGFLFD 238          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|493576615|ref|WP_006529743.1| (phycoerythrobilin:ferredoxin oxidoreductase [Gloeocapsa sp. PCC 73106] >gi|442787741|gb|ELR97454.1| phycoerythrobilin:ferredoxin oxidoreductase [Gloeocapsa sp. PCC 73106])

HSP 1 Score: 171.4 bits (433), Expect = 3.795e-48
Identity = 102/256 (39.84%), Postives = 143/256 (55.86%), Query Frame = 0
Query:   59 VVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSL---SVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADREL 311
            + +Y+ F   A  +M  + S  P+    IP   ++K  T   KG + ET  +   +AY  P ++RQ RAA    +      +VLNFV+FP+ +YDLP FGAD V+LPGGHL+ LD QP+    L      + +L  I  + +  LP  G+ PD A+SFFSP +++ R +   +VET VL AFK Y   YL  VE A    V +  + LE+    + Y  YRA  DPARGM TR+YG  WTE  I+  LF+  +R+L
Sbjct:    1 MTLYQPFLDYAINLMQEQLSLEPYP---IPEGFEQKQGTM-GKGIK-ETTVLTTSYAYKCP-KLRQIRAA---HVEGGNSLQVLNFVIFPELNYDLPFFGADLVTLPGGHLIALDLQPLFHDELYQQKYYQGSLLSIFTNLSEQLPWGGDFPDEAKSFFSPVFLWTRPQQTEIVETLVLEAFKQYLQTYLSYVEQAQ--IVSDRQKQLEILAAQKRYVNYRATKDPARGMFTRLYGEEWTEEYIHGFLFD-LERQL 244          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|1189384387|gb|OSX71627.1| (hypothetical protein BU14_0518s0019 [Porphyra umbilicalis])

HSP 1 Score: 172.17 bits (435), Expect = 3.997e-48
Identity = 101/247 (40.89%), Postives = 134/247 (54.25%), Query Frame = 0
Query:   61 IYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPVSSTSLSVAE--KALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFE 305
            +Y  FW  A  +M  R   L      IP     K   +  KGKR   VT  + +AY  P ++RQ RAA    +   A  +VLN+V+FP  +Y +P FGAD V+LPGGHL+ +D QP+  T    AE   A + +HA + A+LP  G+ P  A  FFSP +++ R  GD  ++  V  AFK Y   YLD VE A   PV +   +  +Q  H+ Y TYRA  DPARGM  R YG  WTE  I+  LF+
Sbjct:   24 LYTPFWDYAVKVMKERLPDL--GPYPIPDGYVHKEAMS-GKGKRAALVTT-DAYAYQTP-KLRQIRAA---HVQGGAALQVLNYVMFPHMNYRIPFFGADLVTLPGGHLIAIDMQPLFHTDEYKAEFYDAFKAVHAKHQAVLPWGGDFPAEAAKFFSPVFLWTRTTGDEAIQGPVFDAFKDYLHTYLDFVEKAE--PVSDPEEIAAIQASHKAYLTYRAEKDPARGMFLRFYGEEWTEEFIHGFLFD 260          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|808794782|ref|WP_046277494.1| (phycoerythrobilin:ferredoxin oxidoreductase [Limnoraphis robusta] >gi|807217096|gb|KKD39075.1| phycoerythrobilin:ferredoxin oxidoreductase [Limnoraphis robusta CS-951])

HSP 1 Score: 170.244 bits (430), Expect = 7.673e-48
Identity = 104/256 (40.62%), Postives = 147/256 (57.42%), Query Frame = 0
Query:   59 VVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPV---SSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADREL 311
            + +Y+ F   A A+M  R S  P+   TIP   + K  TT  KGK+ ET+ +   +A+    ++RQ RAA    +      +VLNFV+FP  +YDLP FGAD V+LPGGHL+ LD QP+   ++      E  L     H    L   G+ P+ A+SFFSP +++ R +   +V+T V  AFK Y  AYL+ VE A PI   ++ RL ++ +  R+Y  YRA  DPARGM TR YG +WTE  I+  LF+  +R+L
Sbjct:    1 MTLYQPFLDYALAVMQERLSLQPY---TIPEGFECKQETT-GKGKKQETI-ITTSYAFK-SAKLRQIRAA---HVQGGNSLQVLNFVIFPQLTYDLPFFGADLVTLPGGHLIALDMQPLFHDTAYQQQYTEPILPIFQTH-QQHLSWGGDFPEEAKSFFSPAFLWTRPKETEVVQTRVFEAFKDYLEAYLNFVEQAQPIT--DSQRLSDILQAQRSYVRYRAAKDPARGMFTRFYGEAWTEEYIHGFLFD-LERQL 243          
BLAST of EWM27984.1 vs. NCBI_GenBank
Match: gi|652390917|ref|WP_026786765.1| (MULTISPECIES: phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix] >gi|1108748039|emb|CUR27152.1| Phycoerythrobilin:ferredoxin oxidoreductase [Planktothrix rubescens])

HSP 1 Score: 169.859 bits (429), Expect = 1.089e-47
Identity = 104/256 (40.62%), Postives = 146/256 (57.03%), Query Frame = 0
Query:   59 VVIYEGFWHEAKAMMDARQSSLPWKSQTIPFDLQRKVCTTPAKGKRLETVTVAEVFAYTVPGRIRQARAAVLSTIPEEAPPKVLNFVVFPDSSYDLPIFGADFVSLPGGHLVVLDFQPV--SSTSLSVAEKALRDIHAHYTALLPSHGEIPDAARSFFSPYYMFIRVEGDALVETTVLAAFKAYFSAYLDLVEHASPIPVEETSRLLEVQEGHRNYATYRAVNDPARGMLTRMYGRSWTERLIYEVLFEQADRELE 312
            + +Y+ F   A  ++  +   LP  S  IP   ++K   T  KGKR + V +   + Y  P ++RQ RAA +     EA  +VLNFV+FP  +YDLP FGAD V+LPGGHL+ LD QP+  +ST      + +  I   Y   LP  G+ P+ A+ FFSP +++ R +   +V+T V  AFKAY  AYL+ VE A PI   E  +  ++ +  + Y +YRA  DPARGM TR YG  WTE  I+  LF+  +R LE
Sbjct:    1 MTLYQPFLDYALTLLKEK---LPLTSYPIPPGFEQKEEIT-GKGKR-QQVVITTSYGYQTP-KLRQIRAAHVQG--GEAL-QVLNFVIFPHLNYDLPFFGADLVTLPGGHLIALDMQPLFHNSTYQQKYTEPILPIFQQYQQHLPWGGDFPEEAQPFFSPAFLWTRPQETEVVKTHVFEAFKAYLQAYLEFVEQAQPIDNSEQRQ--DILQAQKRYVSYRAEKDPARGMFTRFYGEEWTEEYIHGFLFD-LERYLE 244          
The following BLAST results are available for this feature:
BLAST of EWM27984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110325|gb|EWM27984.1|0.000e+0100.00phycoerythrobilin:ferredoxin oxidoreductase [Nanno... [more]
gi|553196288|ref|XP_005856310.1|2.915e-7898.37phycoerythrobilin:ferredoxin oxidoreductase, parti... [more]
gi|754101465|ref|WP_041739787.1|1.682e-5041.60phycoerythrobilin:ferredoxin oxidoreductase [Calot... [more]
gi|428237147|gb|AFZ02937.1|2.708e-5041.77Phycoerythrobilin:ferredoxin oxidoreductase [Calot... [more]
gi|1105015369|ref|WP_071800992.1|2.426e-4939.68phycoerythrobilin:ferredoxin oxidoreductase [Synec... [more]
gi|504987804|ref|WP_015174906.1|4.454e-4941.60phycoerythrobilin:ferredoxin oxidoreductase [Oscil... [more]
gi|493576615|ref|WP_006529743.1|3.795e-4839.84phycoerythrobilin:ferredoxin oxidoreductase [Gloeo... [more]
gi|1189384387|gb|OSX71627.1|3.997e-4840.89hypothetical protein BU14_0518s0019 [Porphyra umbi... [more]
gi|808794782|ref|WP_046277494.1|7.673e-4840.63phycoerythrobilin:ferredoxin oxidoreductase [Limno... [more]
gi|652390917|ref|WP_026786765.1|1.089e-4740.63MULTISPECIES: phycoerythrobilin:ferredoxin oxidore... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2666rna2666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications