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Properties
| Property Name | Value |
|---|
| Product | eukaryotic translation initiation factor 1a |
| Orig transcript id | gnl|cribi|Naga_100008g27.7856.mrna |
| Orig protein id | gnl|cribi|Naga_100008g27.7856 |
| Gene | EIF1 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:902368..904282 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2660 ID=rna2660|Name=rna2660|organism=Nannochloropsis gaditana|type=mRNA|length=1058bp
AAACTTTGATAGACCCTGTGAGATATTCTCGAGCCAATGCAGTTCGCACA
CTTGACTGTCCCATTGATAGTGGATGTGCGAATGACTTCTCGGGCCCCCA
GTTTGTGTGCGTGCGGCTCTCCTTCTCACCCTGGACTGGTACAACCTTTT
GGCATCTCTCATTCGATCATACCCGTACGACATGAAATATAAATAGGACA
ACCTTCATGCTTCTAAGACATTTCGTCAATCGGTGGGCGGGATCCGTCTC
GTCCACGATGCCCCCGCAGGCGGCCAGTGTCGCGATACCCTGTTGCAAGC
AGCAAGCCTTCCGGCTATTATCCTCCGTCCTTGTACCATCACAGTGCTTG
CTTTCCTGTGGACATTTGCCCTATTCTACCGTCCCCAGTGTCTCTAGCAC
GCCTCCTCCAGCTACGTCTCCAGGTCTTATGGGACAGGCACCACCAGCAG
GACCCAAGTATACCCGTGTGCTGCACCCAACAGGGAAGAGTCGAGGGTGG
GGCTTCACGCGCGTTCCTGTTGACGGAGAAGCGCTGGCGTCGGCGGGACT
GGAGGCCAAGTTCGCAGTGATAGAAGTCAAGAGCAAGCAATACAAGGTAA
CGAAAGACGACATCGTCGTGTCCGATAAAATAGAAGGACTGGAGCCAGGT
GTAATATTCGCGTGCGAAAATGTACATCTGGTCGGTACGCCTGAGTACAC
GGTAGTTGGAAGGCCCTACGTGGAAAGTGCAAGAGTCCGGTTACAGGTGG
AGGAGCAGGCTAAAGACGCTAAGGTCATAATTTTCAAAAAGAAACGCCGT
AAAAATTACCGGCGGAAACAAGGCTTCAGGAGGGAAGTGACGATACTGCG
CGTGCTGGGGATTGAGGAATGAAAGAGGAGGACGTCACCGTCACGGGAGG
GGACGGCTCGGGGCTAGCATGGTCGCGAGCTCTCCCGAAGAACTATTACG
TTAAATTTTACCGGCCTCTAGGCCCATGATGCTCTTTTCATTCGTCTGAG
GCTGATGCTGTTGACCTCTTTTCGTCTGATGCAGGTTCTGATTCTTTTTA
TCCATGCG back to topprotein sequence of rna2660 >rna2660-protein ID=rna2660-protein|Name=rna2660|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVY
CFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEA
RNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI back to topmRNA from alignment at CM002459.1:902368..904282+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2660 ID=rna2660|Name=rna2660|organism=Nannochloropsis gaditana|type=mRNA|length=1915bp|location=Sequence derived from alignment at CM002459.1:902368..904282+ (Nannochloropsis gaditana)
TTCTGGTCTGGGTGCATGGGTGTCTTCGTTGATGCAAAGAAATGCATGTA
ATGTTTTAAGGGCGCAAGGACGCTGTGTGGTCCTTTCATACCCAACTTTG
CGTGCTGTTCGATCACTTCTCCGTTCACCCAGAatgccctccacccctct
gaTTTTTTGCTTTCACAGGAAGGCTCCCTTTGTGGTCACTCCTTCTTACG
TCGCCCTTACACATTCGTCAACAAAGCTTTCTGCTCGGGTAGGTTTGTTT
AATAGGAAGAGGTCTTTGAGGTAGGAAATTACAGGCATACCCAGAAACAC
ATGactggggaaaaaaaagacaaatCCCGAAAAACTTATGCACCTCATCC
TTTCAATCGGATGGAGACACGTGTGGCACTTAATCAATTGTGTTTCTCTT
TCGATTCGCTTTCTTGGTATCCTTAACTCAATACATTTCATCATTTTAAA
GGTAaccctctccttgccgtAAGGAAGCAGGGTTGATCGGGTTGTGCAGA
AAGTGTGGTAACGGCAGCGCACAACTATGCCCAAGAataaaggaaagggt
ggcAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGAGA
CCTACTTTttaaggaggagggccaaggtACGTGACAAGCATGTTCTATGA
AAGCGAGATGTGAGGGCATCAACTTCGGGCGAGATGCCAGCCTTGGGACT
CAGAGAGGCTCACAGACGAGGGAATAGAGGAATTTAATAATAATATTATT
CACTGATCCAACtgccttctttttttcgcgCGCGACATAGAGTATGGACA
AGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACG
GGAAGAACCGTTTGGCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGG
GTGTCGGCGGTGAGTCAAATATATGcatatatatacatacaAGCGTCTGT
CGTTGgacgcagagggagggatgggtccgcgaggaggaggggaccggGGG
CGTGAGAGtgaggggacggagggtggCGCGTGGGAGGATGTGGGAGTcgt
gagggggaggcatcGAAGACCGGGAGGTTGTAGGTAGCGTGGCTATGATC
TCCTGGACTGACCGCCTTCGGGCCTCCATCTACGGGACAGGGCGACATCG
TCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATATCATCCAC
AAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAGAGCTCCC
GGAGACGGGTGAGAGAAGAGGACTGGGACAAGCCATCCTTTTTCTAGAAA
GAGCATCGCTGGGTTGGGGCTGGGGGCAGACAGATTCGGCGCGGATGTTG
TTATCGCGCTATTTTGACCTATCCATTCATCCGTCTTCACACCCACAATC
ACTTGCTTTTCAGCGAAAATCAATGAGACAGCAATAGACTTGACCTTGGA
GGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGGTAC
CTTTTGGAGGCTTGTTGCTCGTGCCTTTGAGTCGGTCTGGCAGACACTGA
GAGGCCTACAGTGTGAGCCTCGATCCAAACTTACAAACCTCATTTTCCTT
GCTCTTTCACCTGGCAGATTTAGGCAATGTACCGATCAAAGCTGGTTTGG
AGGCATGCATATCGCAAGCACGCGGAGGTCGTGCATACTTGTCGTGGAAG
CTTGATATCTCGGTGCTTCAACAGGATCGCCCCCTCAAAAATCGCGAGAA
AAGTGAAAGGCGGAAAGGAACGGGATACCTGAGCCTTATCTTTGCAACAA
TAAccgaaaaggaaaggaatggaacGGAGCAGCAATAAAGTGGAGGATGT
GTGTAATgattgggcgggggggcagggttcagatgaagaagaaaaaagga
gtaCCCAAAAAATCC back to topCoding sequence (CDS) from alignment at CM002459.1:902368..904282+ >rna2660 ID=rna2660|Name=rna2660|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002459.1:902368..904282+ (Nannochloropsis gaditana)
ATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGAAAAA
TGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggccaag
AGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGTGTAC
TGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGCGGAA
GAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGCGACT
ACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGAGGCA
AGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCAATGA
GACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGATGAGA
TCGGAGTGGATTTCGACGAGATTTAGATGCCCAAGAataaaggaaagggt
ggcAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGAGA
CCTACTTTttaaggaggagggccaagAGTATGGACAAGTGATAAAGATGC
TGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTTTG
GCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGGCGA
CATCGTCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATATCA
TCCACAAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAGAG
CTCCCGGAGACGGCGAAAATCAATGAGACAGCAATAGACTTGACCTTGGA
GGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGATTT
AGATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGAAA
AATGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggcca
agAGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGTGT
ACTGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGCGG
AAGAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGCGA
CTACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGAGG
CAAGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCAAT
GAGACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGATGA
GATCGGAGTGGATTTCGACGAGATTTAGATGCCCAAGAataaaggaaagg
gtggcAAAAATCGTCGCCGCGGGAAAAATGAGAATGAGGAGACGAAGCGA
GACCTACTTTttaaggaggagggccaagAGTATGGACAAGTGATAAAGAT
GCTGGGCAACGGCCGGTGCGAGGTGTACTGCTTTGACGGGAAGAACCGTT
TGGCACACATCCGGGGGAAGATGCGGAAGAAAGTTTGGGTGTCGGCGGGC
GACATCGTCCTCTTGGGGATGCGCGACTACCAGGAGGACAAAGTGGATAT
CATCCACAAGTACAACGCGGATGAGGCAAGGAATCTGAAGGCATTTGGAG
AGCTCCCGGAGACGGCGAAAATCAATGAGACAGCAATAGACTTGACCTTG
GAGGGCGGGTCCGACTCAGAGGATGAGATCGGAGTGGATTTCGACGAGAT
TTAGATGCCCAAGAataaaggaaagggtggcAAAAATCGTCGCCGCGGGA
AAAATGAGAATGAGGAGACGAAGCGAGACCTACTTTttaaggaggagggc
caagAGTATGGACAAGTGATAAAGATGCTGGGCAACGGCCGGTGCGAGGT
GTACTGCTTTGACGGGAAGAACCGTTTGGCACACATCCGGGGGAAGATGC
GGAAGAAAGTTTGGGTGTCGGCGGGCGACATCGTCCTCTTGGGGATGCGC
GACTACCAGGAGGACAAAGTGGATATCATCCACAAGTACAACGCGGATGA
GGCAAGGAATCTGAAGGCATTTGGAGAGCTCCCGGAGACGGCGAAAATCA
ATGAGACAGCAATAGACTTGACCTTGGAGGGCGGGTCCGACTCAGAGGAT
GAGATCGGAGTGGATTTCGACGAGATTTAG back to top
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