EWM27964.1, cds2652 (CDS) Nannochloropsis gaditana

Overview
NameEWM27964.1
Unique Namecds2652
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:902894..902993 +
Alignment locationCM002459.1:903158..903276 +
Alignment locationCM002459.1:903508..903625 +
Alignment locationCM002459.1:903781..903863 +
Alignment locationCM002459.1:903985..903990 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27964.1
Producteukaryotic translation initiation factor 1a
Orig transcript idgnl|cribi|Naga_100008g27.7856.mrna
GeneEIF1
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:902894..902993 +
CM002459.1supercontigCM002459.1:903158..903276 +
CM002459.1supercontigCM002459.1:903508..903625 +
CM002459.1supercontigCM002459.1:903781..903863 +
CM002459.1supercontigCM002459.1:903985..903990 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR018104TIF_eIF-1A_CS
IPR006196RNA-binding_domain_S1_IF1
IPR012340NA-bd_OB-fold
IPR001253TIF_eIF-1A
Homology
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|585110304|gb|EWM27963.1| (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana] >gi|585110305|gb|EWM27964.1| eukaryotic translation initiation factor 1a [Nannochloropsis gaditana])

HSP 1 Score: 286.574 bits (732), Expect = 6.181e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
            MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|298707013|emb|CBJ29821.1| (Eukaryotic initiation factor 1 [Ectocarpus siliculosus])

HSP 1 Score: 233.032 bits (593), Expect = 9.710e-77
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
            MPKNKGKGGKNRRRGKNENEETKR+L FKE GQEY QV++MLGNGR E YC+DG  RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL +EG   +ED+IG+DFDEI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-AEDDIGIDFDEI 140          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|676388973|ref|XP_009037765.1| (hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens] >gi|323451908|gb|EGB07784.1| hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens])

HSP 1 Score: 229.18 bits (583), Expect = 2.905e-75
Identity = 109/135 (80.74%), Postives = 122/135 (90.37%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIG 135
            MPKNKGKGGKNRRRGKNENEETKR L FKE GQEY QV++MLGNGRCE YCFDG  RL HIRGKMRKKVWVSAGDIVL+G+R+YQ+DKVDIIHKYNADEARNLK +GELPETA+INETA+D+ +E G D+ D+IG
Sbjct:    1 MPKNKGKGGKNRRRGKNENEETKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGVTRLGHIRGKMRKKVWVSAGDIVLVGLREYQDDKVDIIHKYNADEARNLKQYGELPETARINETAVDMAME-GDDANDDIG 134          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|635367222|emb|CCI44554.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 216.083 bits (549), Expect = 5.096e-70
Identity = 101/141 (71.63%), Postives = 123/141 (87.23%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
            MPKNKGKGGKNRRRGKN+NEE KR+L FKE+GQ+Y QV++MLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELPE+A+INET +DL+++     ED+IG DF++I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEDGQQYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPESARINETTMDLSMDA---DEDDIGFDFNDI 138          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|301104174|ref|XP_002901172.1| (eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >gi|675183295|ref|XP_008900532.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >gi|262101106|gb|EEY59158.1| eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >gi|566030837|gb|ETI53748.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1569] >gi|567968499|gb|ETK93629.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|567996928|gb|ETL47024.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|568026126|gb|ETM00122.1| eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica] >gi|568056593|gb|ETM53303.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|568099562|gb|ETN14276.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >gi|570334489|gb|ETO82437.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1976] >gi|570958578|gb|ETP23557.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica CJ01A1] >gi|570994440|gb|ETP51568.1| eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica P10297] >gi|970634311|gb|KUF79602.1| Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >gi|970646707|gb|KUF86765.1| Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >gi|1214687330|gb|OWZ03659.1| Eukaryotic translation initiation factor 1A [Phytophthora megakarya])

HSP 1 Score: 210.305 bits (534), Expect = 8.623e-68
Identity = 97/126 (76.98%), Postives = 113/126 (89.68%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEG 126
            MPKNKGKGGKNRRRGKN+NEE KR+L FKEEGQEY QV++MLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ +EG
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAMEG 126          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|953498434|emb|CEG40072.1| (eukaryotic translation initiation factor x-chromosomal [Plasmopara halstedii])

HSP 1 Score: 213.772 bits (543), Expect = 3.634e-67
Identity = 96/126 (76.19%), Postives = 113/126 (89.68%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEG 126
            MPKNKGKGGKNRRRGKN+NEE KRDL FKE+GQEY QV++MLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INETA+D+ +EG
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEG 126          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|695391674|ref|XP_009520099.1| (hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae] >gi|348684996|gb|EGZ24811.1| hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae])

HSP 1 Score: 203.371 bits (516), Expect = 4.763e-65
Identity = 94/125 (75.20%), Postives = 110/125 (88.00%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLE 125
            MPKNKGKGGKNRRRGK + EE KR+L FKEEGQEY QV++MLGNGR E YCFDG  RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ +E
Sbjct:    1 MPKNKGKGGKNRRRGKGDGEENKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAME 125          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|1032650814|gb|OAQ32094.1| (nucleic acid-binding protein [Mortierella elongata AG-77] >gi|1183504725|gb|ORZ28293.1| hypothetical protein BCR41DRAFT_344985 [Lobosporangium transversale])

HSP 1 Score: 202.986 bits (515), Expect = 6.131e-65
Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFD 139
            MPKNKGKGGKNRRRGKNENE  KR+L+FKE+GQEY QV+KMLGNGR E  CFDG+ RLAHIRGKMRKKVW++ GDI+L+ +RD+Q+DK D+I KYN +EARNLKA+GELPE+AKINET    T +G   SEDE+ V+FD
Sbjct:    1 MPKNKGKGGKNRRRGKNENEGEKRELVFKEDGQEYAQVLKMLGNGRVEAQCFDGEKRLAHIRGKMRKKVWINQGDIILISLRDFQDDKADVILKYNTEEARNLKAYGELPESAKINETD---TFQG---SEDELDVEFD 133          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|929772404|ref|XP_014161135.1| (eukaryotic translation initiation factor 1A [Sphaeroforma arctica JP610] >gi|906959169|gb|KNC87233.1| eukaryotic translation initiation factor 1A [Sphaeroforma arctica JP610])

HSP 1 Score: 202.986 bits (515), Expect = 7.458e-65
Identity = 97/137 (70.80%), Postives = 115/137 (83.94%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVD 137
            MPKNKGKGGKNRRRGKNENE+ KR+L+FKE+GQEY QV+KMLG+GR E  CFDG +RL HIRGK+RKKVW++ GDI+L+G+RDYQ+ K D+I KYNADEARNLKA+GELP+TAKINET  D     G D ED+I  D
Sbjct:    1 MPKNKGKGGKNRRRGKNENEQQKRELIFKEDGQEYAQVVKMLGSGRLEAMCFDGTSRLCHIRGKLRKKVWIAQGDIILIGLRDYQDAKADVIVKYNADEARNLKAYGELPDTAKINETPAD-----GPDMEDDIMFD 132          
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|1022849526|ref|XP_016272830.1| (translation initiation factor eIF-1A [Rhodotorula toruloides NP11] >gi|472584105|gb|EMS21711.1| translation initiation factor eIF-1A [Rhodotorula toruloides NP11] >gi|647394571|emb|CDR35802.1| RHTO0S01e07426g1_1 [Rhodotorula toruloides])

HSP 1 Score: 203.756 bits (517), Expect = 7.677e-65
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
            MPKNKGKGGKNRRRGKNENE  KR+L+FKEEGQEY QV+KMLGNGR E  CFDG+ RLAHIRGKMRKKVW++ GDI+LL +RD+Q+DK D+I KY+ADEAR LK +GELPETAKINETA        +D E +  V+FDE+
Sbjct:    1 MPKNKGKGGKNRRRGKNENEGDKRELVFKEEGQEYAQVLKMLGNGRVEAMCFDGEKRLAHIRGKMRKKVWINQGDIILLSLRDFQDDKADVIQKYSADEARKLKQYGELPETAKINETA--------ADEEHDGLVEFDEV 133          
The following BLAST results are available for this feature:
BLAST of EWM27964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110304|gb|EWM27963.1|6.181e-98100.00eukaryotic translation initiation factor 1a [Nanno... [more]
gi|298707013|emb|CBJ29821.1|9.710e-7779.43Eukaryotic initiation factor 1 [Ectocarpus silicul... [more]
gi|676388973|ref|XP_009037765.1|2.905e-7580.74hypothetical protein AURANDRAFT_8202, partial [Aur... [more]
gi|635367222|emb|CCI44554.1|5.096e-7071.63unnamed protein product [Albugo candida][more]
gi|301104174|ref|XP_002901172.1|8.623e-6876.98eukaryotic translation initiation factor 1A, putat... [more]
gi|953498434|emb|CEG40072.1|3.634e-6776.19eukaryotic translation initiation factor x-chromos... [more]
gi|695391674|ref|XP_009520099.1|4.763e-6575.20hypothetical protein PHYSODRAFT_354005 [Phytophtho... [more]
gi|1032650814|gb|OAQ32094.1|6.131e-6571.22nucleic acid-binding protein [Mortierella elongata... [more]
gi|929772404|ref|XP_014161135.1|7.458e-6570.80eukaryotic translation initiation factor 1A [Sphae... [more]
gi|1022849526|ref|XP_016272830.1|7.677e-6570.21translation initiation factor eIF-1A [Rhodotorula ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2660rna2660Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications