EWM27964.1, cds2652 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|585110304|gb|EWM27963.1| (eukaryotic translation initiation factor 1a [Nannochloropsis gaditana] >gi|585110305|gb|EWM27964.1| eukaryotic translation initiation factor 1a [Nannochloropsis gaditana]) HSP 1 Score: 286.574 bits (732), Expect = 6.181e-98 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI Sbjct: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|298707013|emb|CBJ29821.1| (Eukaryotic initiation factor 1 [Ectocarpus siliculosus]) HSP 1 Score: 233.032 bits (593), Expect = 9.710e-77 Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141 MPKNKGKGGKNRRRGKNENEETKR+L FKE GQEY QV++MLGNGR E YC+DG RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL +EG +ED+IG+DFDEI Sbjct: 1 MPKNKGKGGKNRRRGKNENEETKRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-AEDDIGIDFDEI 140
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|676388973|ref|XP_009037765.1| (hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens] >gi|323451908|gb|EGB07784.1| hypothetical protein AURANDRAFT_8202, partial [Aureococcus anophagefferens]) HSP 1 Score: 229.18 bits (583), Expect = 2.905e-75 Identity = 109/135 (80.74%), Postives = 122/135 (90.37%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIG 135 MPKNKGKGGKNRRRGKNENEETKR L FKE GQEY QV++MLGNGRCE YCFDG RL HIRGKMRKKVWVSAGDIVL+G+R+YQ+DKVDIIHKYNADEARNLK +GELPETA+INETA+D+ +E G D+ D+IG Sbjct: 1 MPKNKGKGGKNRRRGKNENEETKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGVTRLGHIRGKMRKKVWVSAGDIVLVGLREYQDDKVDIIHKYNADEARNLKQYGELPETARINETAVDMAME-GDDANDDIG 134
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|635367222|emb|CCI44554.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 216.083 bits (549), Expect = 5.096e-70 Identity = 101/141 (71.63%), Postives = 123/141 (87.23%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141 MPKNKGKGGKNRRRGKN+NEE KR+L FKE+GQ+Y QV++MLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELPE+A+INET +DL+++ ED+IG DF++I Sbjct: 1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEDGQQYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPESARINETTMDLSMDA---DEDDIGFDFNDI 138
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|301104174|ref|XP_002901172.1| (eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >gi|675183295|ref|XP_008900532.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >gi|262101106|gb|EEY59158.1| eukaryotic translation initiation factor 1A, putative [Phytophthora infestans T30-4] >gi|566030837|gb|ETI53748.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1569] >gi|567968499|gb|ETK93629.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|567996928|gb|ETL47024.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|568026126|gb|ETM00122.1| eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica] >gi|568056593|gb|ETM53303.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica] >gi|568099562|gb|ETN14276.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica INRA-310] >gi|570334489|gb|ETO82437.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica P1976] >gi|570958578|gb|ETP23557.1| eukaryotic translation initiation factor 1A, X-chromosomal [Phytophthora parasitica CJ01A1] >gi|570994440|gb|ETP51568.1| eukaryotic translation initiation factor 1A, Y-chromosomal [Phytophthora parasitica P10297] >gi|970634311|gb|KUF79602.1| Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >gi|970646707|gb|KUF86765.1| Eukaryotic translation initiation factor 1A [Phytophthora nicotianae] >gi|1214687330|gb|OWZ03659.1| Eukaryotic translation initiation factor 1A [Phytophthora megakarya]) HSP 1 Score: 210.305 bits (534), Expect = 8.623e-68 Identity = 97/126 (76.98%), Postives = 113/126 (89.68%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEG 126 MPKNKGKGGKNRRRGKN+NEE KR+L FKEEGQEY QV++MLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ +EG Sbjct: 1 MPKNKGKGGKNRRRGKNDNEENKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAMEG 126
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|953498434|emb|CEG40072.1| (eukaryotic translation initiation factor x-chromosomal [Plasmopara halstedii]) HSP 1 Score: 213.772 bits (543), Expect = 3.634e-67 Identity = 96/126 (76.19%), Postives = 113/126 (89.68%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEG 126 MPKNKGKGGKNRRRGKN+NEE KRDL FKE+GQEY QV++MLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVD+IHKYNADEAR+LKA+GELP+ A+INETA+D+ +EG Sbjct: 1 MPKNKGKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEG 126
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|695391674|ref|XP_009520099.1| (hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae] >gi|348684996|gb|EGZ24811.1| hypothetical protein PHYSODRAFT_354005 [Phytophthora sojae]) HSP 1 Score: 203.371 bits (516), Expect = 4.763e-65 Identity = 94/125 (75.20%), Postives = 110/125 (88.00%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLE 125 MPKNKGKGGKNRRRGK + EE KR+L FKEEGQEY QV++MLGNGR E YCFDG RL HIRGKMRKKVWV AGDI+L+ +R+YQ+ KVDIIHKYNADEAR+LKA+GELP+ A+INETA+D+ +E Sbjct: 1 MPKNKGKGGKNRRRGKGDGEENKRELEFKEEGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETAVDMAME 125
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|1032650814|gb|OAQ32094.1| (nucleic acid-binding protein [Mortierella elongata AG-77] >gi|1183504725|gb|ORZ28293.1| hypothetical protein BCR41DRAFT_344985 [Lobosporangium transversale]) HSP 1 Score: 202.986 bits (515), Expect = 6.131e-65 Identity = 99/139 (71.22%), Postives = 118/139 (84.89%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFD 139 MPKNKGKGGKNRRRGKNENE KR+L+FKE+GQEY QV+KMLGNGR E CFDG+ RLAHIRGKMRKKVW++ GDI+L+ +RD+Q+DK D+I KYN +EARNLKA+GELPE+AKINET T +G SEDE+ V+FD Sbjct: 1 MPKNKGKGGKNRRRGKNENEGEKRELVFKEDGQEYAQVLKMLGNGRVEAQCFDGEKRLAHIRGKMRKKVWINQGDIILISLRDFQDDKADVILKYNTEEARNLKAYGELPESAKINETD---TFQG---SEDELDVEFD 133
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|929772404|ref|XP_014161135.1| (eukaryotic translation initiation factor 1A [Sphaeroforma arctica JP610] >gi|906959169|gb|KNC87233.1| eukaryotic translation initiation factor 1A [Sphaeroforma arctica JP610]) HSP 1 Score: 202.986 bits (515), Expect = 7.458e-65 Identity = 97/137 (70.80%), Postives = 115/137 (83.94%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVD 137 MPKNKGKGGKNRRRGKNENE+ KR+L+FKE+GQEY QV+KMLG+GR E CFDG +RL HIRGK+RKKVW++ GDI+L+G+RDYQ+ K D+I KYNADEARNLKA+GELP+TAKINET D G D ED+I D Sbjct: 1 MPKNKGKGGKNRRRGKNENEQQKRELIFKEDGQEYAQVVKMLGSGRLEAMCFDGTSRLCHIRGKLRKKVWIAQGDIILIGLRDYQDAKADVIVKYNADEARNLKAYGELPDTAKINETPAD-----GPDMEDDIMFD 132
BLAST of EWM27964.1 vs. NCBI_GenBank
Match: gi|1022849526|ref|XP_016272830.1| (translation initiation factor eIF-1A [Rhodotorula toruloides NP11] >gi|472584105|gb|EMS21711.1| translation initiation factor eIF-1A [Rhodotorula toruloides NP11] >gi|647394571|emb|CDR35802.1| RHTO0S01e07426g1_1 [Rhodotorula toruloides]) HSP 1 Score: 203.756 bits (517), Expect = 7.677e-65 Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0 Query: 1 MPKNKGKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141 MPKNKGKGGKNRRRGKNENE KR+L+FKEEGQEY QV+KMLGNGR E CFDG+ RLAHIRGKMRKKVW++ GDI+LL +RD+Q+DK D+I KY+ADEAR LK +GELPETAKINETA +D E + V+FDE+ Sbjct: 1 MPKNKGKGGKNRRRGKNENEGDKRELVFKEEGQEYAQVLKMLGNGRVEAMCFDGEKRLAHIRGKMRKKVWINQGDIILLSLRDFQDDKADVIQKYSADEARKLKQYGELPETAKINETA--------ADEEHDGLVEFDEV 133 The following BLAST results are available for this feature:
BLAST of EWM27964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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