rna2659, rna2659 (mRNA) Nannochloropsis gaditana

Overview
Namerna2659
Unique Namerna2659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1032
Alignment locationCM002459.1:901058..902228 -

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Properties
Property NameValue
Product50s ribosomal protein l21
Orig transcript idgnl|cribi|Naga_100008g26.7878.mrna
Orig protein idgnl|cribi|Naga_100008g26.7878
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:901058..902228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g26gene2543Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2659rna2659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27986.1cds2651Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2659 ID=rna2659|Name=rna2659|organism=Nannochloropsis gaditana|type=mRNA|length=1032bp
ATGAAGAATCCGCAAGCAGAGGAGAAACGCGTCCTAGTCTATGAACATGT
TGGAAATCCCACAAATACGGATGAAATATCATTAAATGGACTAACAATTT
ATCTTGCTTCCACATTTTCGTTTGTCTTGGCGCAGTTACAAGGTGTAGGA
ACCCGAGCCGAGCCCAACAATTTGACAAAATACCGAACAGACGTGCGAAG
AATGATCGGGCGCGAGGAGCATGCTCCGACTTGTGTCAAGCGGGTTTTGA
TAACCGGCGGTGCGGGACAGATTGCATATGCTCTATTGCCTCACTTGATC
AGTGGACGAGTCTTTGGCCCCCAAGTCCGCTTAATGGTGCACTTACTCGA
CATAGACGGTACTGAGAATGCATTGCGTGGTGTGCAAATGGAGATAGAAG
ATGCTGCCTCGCCAGTGGTGGTGGGCGTAGTGACCACCACGGATTTGCGC
GTGGCATTTACCGACGTGGACTATGCGATTTTGTTGGGGGGCTTCCCTCG
CTTGCCCGGCATGGAGCGAAAGGAGCTTCTTGCTAAAAATGTGGAGATCA
TCACCATGCACGCCGCGGCGCTGGATGAATACGCCAGCCGAGCCGTGAAG
GTGCTAGTGGTGGCTAATCCTGCCAACACACTGGCGCTCATTGCGAAAAA
ACGCGCGGCCAGCCTGCCGGCGGAAAACTTCTCGTGCTTAACGCGATTGG
ACCATGACCGTCTCCGAGGCATGATCGCCAAAAAAATTGACTCCCTTAAG
ATTCCCGATGCGCATGGAGCTGTGACTGCCATGCAGGTGCGGAACGTGAT
CATATGGGGCAACCACTCGAGCACCCAGGTCCCCTCTGCGGCGAAAGCTC
AGGTCCGGCTAGGGGGCAGATGGGTGCCCGTCTTGGACATCATTGGAGAC
GAGGAGGCAGTTTGGCTGCACGACGAATTGGTGACGCAAGTGCAACAACG
GGGCGCAGAAATCTTGGCGGCCCGAAAGTTGAGCTCGGCGTTGAGCGCGG
CCCAGGCGATTGCGAATCATTTTAAGGACTAG
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protein sequence of rna2659

>rna2659-protein ID=rna2659-protein|Name=rna2659|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLS
CGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGF
TRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVI
FACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKN
YRRKQGFRREVTILRVLGIEE
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mRNA from alignment at CM002459.1:901058..902228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2659 ID=rna2659|Name=rna2659|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp|location=Sequence derived from alignment at CM002459.1:901058..902228- (Nannochloropsis gaditana)
AAACTTTGATAGACCCTGTGAGATATTCTCGAGCCAATGCAGTTCGCACA
CTTGACTGTCCCATTGATAGTGGATGTGCGAATGACTTCTCGGGCCCCCA
GTTTGTGTGCGTGCGGCTCTCCTTCTCACCCTGGACTGGTACAACCTTTT
GGCATCTCTCATTCGATCATACCCGTACGACATGAAATATAAATAGGACA
ACCTTCATGCTTCTAAGACATTTCGTCAATCGGTGGGCGGGATCCGTCTC
GTCCACGATGCCCCCGCAGGCGGCCAGTGTCGCGATACCCTGTTGCAAGC
AGCAAGCCTTCCGGCTATTATCCTCCGTCCTTGTACCATCACAGTGCTTG
CTTTCCTGTGGACATTTGCCCTATTCTACCGTCCCCAGTGTCTCTAGCAC
GCCTCCTCCAGCTACGTCTCCAGGTCTTATGGGACAGGCACCACCAGCAG
GAGTGAGTTGGGAGGCCAAAGAGGAGGTCTTGGGCGTCCGCAGGCGAGGT
GGGAAAAGTTTGACTTCTCACACCCTCCTTTATTTTTCTATCTCTACTTT
AAATTAATTGTACAGCCCAAGTATACCCGTGTGCTGCACCCAACAGGGAA
GAGTCGAGGGTGGGGCTTCACGCGCGTTCCTGTTGACGGAGAAGCGCTGG
CGTCGGCGGGACTGGAGGCCAAGTTCGCAGTGATAGAAGTCAAGAGCAAG
CAATACAAGGTAACGAAAGACGACATCGTCGTGTCCGATAAAATAGAAGG
ACTGGAGCCAGGTGTAATATTCGCGTGCGAAAATGTACATCTGGTCGGTA
CGCCTGAGTACACGGTAGTTGGAAGGCCCTACGTGGAAAGTGCAAGAGTC
CGGTTACAGGTGGAGGAGCAGGCTAAAGACGCTAAGGTCATAATTTTCAA
AAAGAAACGCCGTAAAAATTACCGGCGGAAACAAGGCTTCAGGAGGGAAG
TGACGATACTGCGCGTGCTGGGGATTGAGGAATGAAAGAGGAGGACGTCA
CCGTCACGGGAGGGGACGGCTCGGGGCTAGCATGGTCGCGAGCTCTCCCG
AAGAACTATTACGTTAAATTTTACCGGCCTCTAGGCCCATGATGCTCTTT
TCATTCGTCTGAGGCTGATGCTGTTGACCTCTTTTCGTCTGATGCAGGTT
CTGATTCTTTTTATCCATGCG
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Coding sequence (CDS) from alignment at CM002459.1:901058..902228-

>rna2659 ID=rna2659|Name=rna2659|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002459.1:901058..902228- (Nannochloropsis gaditana)
CCCAAGTATACCCGTGTGCTGCACCCAACAGGGAAGAGTCGAGGGTGGGG
CTTCACGCGCGTTCCTGTTGACGGAGAAGCGCTGGCGTCGGCGGGACTGG
AGGCCAAGTTCGCAGTGATAGAAGTCAAGAGCAAGCAATACAAGGTAACG
AAAGACGACATCGTCGTGTCCGATAAAATAGAAGGACTGGAGCCAGGTGT
AATATTCGCGTGCGAAAATGTACATCTGGTCGGTACGCCTGAGTACACGG
TAGTTGGAAGGCCCTACGTGGAAAGTGCAAGAGTCCGGTTACAGGTGGAG
GAGCAGGCTAAAGACGCTAAGGTCATAATTTTCAAAAAGAAACGCCGTAA
AAATTACCGGCGGAAACAAGGCTTCAGGAGGGAAGTGACGATACTGCGCG
TGCTGGGGATTGAGGAATGAATGCTTCTAAGACATTTCGTCAATCGGTGG
GCGGGATCCGTCTCGTCCACGATGCCCCCGCAGGCGGCCAGTGTCGCGAT
ACCCTGTTGCAAGCAGCAAGCCTTCCGGCTATTATCCTCCGTCCTTGTAC
CATCACAGTGCTTGCTTTCCTGTGGACATTTGCCCTATTCTACCGTCCCC
AGTGTCTCTAGCACGCCTCCTCCAGCTACGTCTCCAGGTCTTATGGGACA
GGCACCACCAGCAGGACCCAAGTATACCCGTGTGCTGCACCCAACAGGGA
AGAGTCGAGGGTGGGGCTTCACGCGCGTTCCTGTTGACGGAGAAGCGCTG
GCGTCGGCGGGACTGGAGGCCAAGTTCGCAGTGATAGAAGTCAAGAGCAA
GCAATACAAGGTAACGAAAGACGACATCGTCGTGTCCGATAAAATAGAAG
GACTGGAGCCAGGTGTAATATTCGCGTGCGAAAATGTACATCTGGTCGGT
ACGCCTGAGTACACGGTAGTTGGAAGGCCCTACGTGGAAAGTGCAAGAGT
CCGGTTACAGGTGGAGGAGCAGGCTAAAGACGCTAAGGTCATAATTTTCA
AAAAGAAACGCCGTAAAAATTACCGGCGGAAACAAGGCTTCAGGAGGGAA
GTGACGATACTGCGCGTGCTGGGGATTGAGGAATGAATGCTTCTAAGACA
TTTCGTCAATCGGTGGGCGGGATCCGTCTCGTCCACGATGCCCCCGCAGG
CGGCCAGTGTCGCGATACCCTGTTGCAAGCAGCAAGCCTTCCGGCTATTA
TCCTCCGTCCTTGTACCATCACAGTGCTTGCTTTCCTGTGGACATTTGCC
CTATTCTACCGTCCCCAGTGTCTCTAGCACGCCTCCTCCAGCTACGTCTC
CAGGTCTTATGGGACAGGCACCACCAGCAGGA
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Synonyms
Publications