EWM27986.1, cds2651 (CDS) Nannochloropsis gaditana

Overview
NameEWM27986.1
Unique Namecds2651
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:901777..902022 -
Alignment locationCM002459.1:901244..901663 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27986.1
Product50s ribosomal protein l21
Orig transcript idgnl|cribi|Naga_100008g26.7878.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:901777..902022 -
CM002459.1supercontigCM002459.1:901244..901663 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018258Ribosomal_L21_CS
IPR001787Ribosomal_L21
IPR028909L21p-like
Homology
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|585110327|gb|EWM27986.1| (50s ribosomal protein l21 [Nannochloropsis gaditana])

HSP 1 Score: 451.825 bits (1161), Expect = 9.375e-161
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE 221
            MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE
Sbjct:    1 MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE 221          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|298714359|emb|CBJ27416.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.161 bits (287), Expect = 1.297e-27
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 0
Query:   85 YTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219
            +T V HP     GW F  VP        AG E  FAVI + + Q+KVTKDD++V++K+ G + G      +V LVGT E TVVGRP V  A V+L VEEQ +D KVI+ KK+RRK+ +  QG RREVT+LRV+ I
Sbjct:  151 HTVVKHPPAP--GWDFPPVP--------AGCEPTFAVIRLGNTQHKVTKDDVIVAEKLVG-DVGTTLETADVLLVGTRESTVVGRPTVPGATVKLFVEEQTRDKKVIVLKKRRRKSSKTTQGHRREVTLLRVVEI 274          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1210523075|dbj|GAX18126.1| (hypothetical protein FisN_25Hh108 [Fistulifera solaris])

HSP 1 Score: 107.457 bits (267), Expect = 8.696e-25
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0
Query:  120 AVIEVKSKQYKVTKDDIVVSDK---IEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219
            AVIE+   QYKVT DD+++ +K   +E  + G + + ++V L+ T  YT+VG P VE A V + VEE  KDAKVIIFKK+RRK+ +RK GFRREVT+LRVL I
Sbjct:  135 AVIELAGTQYKVTTDDLLIVNKLKPVEKFQLGSVHSLDSVLLLSTSHYTLVGLPKVEGAVVDVMVEEITKDAKVIIFKKRRRKHSQRKNGFRREVTMLRVLDI 237          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1210531376|dbj|GAX10044.1| (hypothetical protein FisN_25Lh108 [Fistulifera solaris])

HSP 1 Score: 107.071 bits (266), Expect = 1.354e-24
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0
Query:  120 AVIEVKSKQYKVTKDDIVVSDK---IEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219
            AVIE+   QYKVT DD+++ +K   +E  + G + + ++V L+ T  YT+VG P VE A V + VEE  KDAKVIIFKK+RRK+ +RK GFRREVT+LRVL I
Sbjct:  135 AVIELAGTQYKVTTDDLLIVNKLKPVEKFQLGSVHSLDSVLLLSTSHYTLVGLPKVEGAVVDVMVEEITKDAKVIIFKKRRRKHSQRKNGFRREVTMLRVLDI 237          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|219113787|ref|XP_002186477.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583327|gb|ACI65947.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 100.908 bits (250), Expect = 1.372e-22
Identity = 49/104 (47.12%), Postives = 72/104 (69.23%), Query Frame = 0
Query:  119 FAVIEVKSKQYKVTKDDIVVSDKI---EGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219
            FA++E+   Q+K+T DD+++ +++   +    G +   E+V LV +  YT+VG PYV  A+V L VEE   DAKVI+F+K+RRKN +RK G RR+VT+LRVL I
Sbjct:  110 FAILELAGSQHKITTDDLLIVNRLRPQKHFHVGSVHTLEDVMLVSSSHYTLVGMPYVRGAQVDLLVEEITMDAKVIVFRKRRRKNSQRKNGSRRDVTMLRVLDI 213          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|760437741|ref|XP_011395939.1| (50S ribosomal protein L21, mitochondrial [Auxenochlorella protothecoides] >gi|675350629|gb|KFM23069.1| 50S ribosomal protein L21, mitochondrial [Auxenochlorella protothecoides])

HSP 1 Score: 95.5153 bits (236), Expect = 2.714e-21
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 0
Query:  119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220
            FAV+E+   QYKVT +D +V+++I G++       + V L GT + T++GRP V S  V   VEEQ  D KV+IF K+RRKN RR +G R+ +T+LR+L ++
Sbjct:   41 FAVVELAGTQYKVTPNDTIVTERIPGVDVNDRITLDRVLLAGTADATIIGRPVVPSITVTAAVEEQFLDGKVLIFHKRRRKNSRRTKGHRQPLTMLRILDVD 142          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1086358360|emb|SDH09984.1| (large subunit ribosomal protein L21 [Roseospirillum parvum])

HSP 1 Score: 91.6633 bits (226), Expect = 1.868e-20
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query:  119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220
            FAVI+   KQYKV KDD++  +KIEG E G     + V +VG      VG P V+ A V  QV  Q KD KVI+FKKKRR+NYRRK+G R+++T++R+  I+
Sbjct:    2 FAVIKTGGKQYKVAKDDVLAIEKIEG-EDGADVMFDQVLMVGDK----VGAPTVDGAAVAAQVVRQFKDDKVIVFKKKRRQNYRRKKGHRQQLTLVRITDIQ 98          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1061383359|ref|WP_069186381.1| (50S ribosomal protein L21 [Terasakiella sp. PR1] >gi|1059824012|emb|SCA55670.1| 50S ribosomal protein L21 [Terasakiella sp. PR1])

HSP 1 Score: 90.8929 bits (224), Expect = 3.713e-20
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 0
Query:  119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220
            FA+++   KQY V ++D++V +K+ G E G     E+V LVG    T VG P V+ A V  +V EQ K  KVIIFKKKRR+NYRR +G R+E T+LR+  I+
Sbjct:    2 FAIVKTGGKQYTVAENDVIVVEKLAG-EAGSEIKLEDVLLVGAEGKTTVGTPLVKGAAVTAEVLEQGKGDKVIIFKKKRRQNYRRTKGHRQEQTVLRIKSIK 102          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|831762941|ref|XP_012750716.1| (hypothetical protein SAMD00019534_093370, partial [Acytostelium subglobosum LB1] >gi|735851348|dbj|GAM26162.1| hypothetical protein SAMD00019534_093370, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 93.2041 bits (230), Expect = 5.422e-20
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 0
Query:  115 LEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRV 216
            ++  FAV+ +  KQYKV K DI+++D++  ++ G     + V +VGT E T++G P VE A+V   +EEQ+K + V IFK KRRKNY+R  GF    T++R+
Sbjct:   90 VDQSFAVVHLGGKQYKVIKGDIIMADRLPNIDVGEHIVLDKVLMVGTKETTMIGTPLVEGAKVHAFIEEQSKASHVTIFKHKRRKNYKRTTGFTPLATVIRI 191          
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|926790659|ref|XP_013903803.1| (50S ribosomal protein L21 [Monoraphidium neglectum] >gi|761974731|gb|KIZ04784.1| 50S ribosomal protein L21 [Monoraphidium neglectum])

HSP 1 Score: 93.2041 bits (230), Expect = 7.971e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 0
Query:  108 EALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219
            EA  +  L+  FAV+++   QYKVT DD+++  K+ G E   + A E V L+GTP+ T +GRPYV  A V   VE   ++ KV +FKKK RK Y + QG R ++T LR+L +
Sbjct:   87 EAAFTVPLQPAFAVVQLGPFQYKVTADDVILHPKLVGAEVNDVIALEKVLLLGTPQDTTIGRPYVPGACVVAAVESHFRETKVHVFKKKVRKRYSKLQGHRSQMTALRILQV 198          
The following BLAST results are available for this feature:
BLAST of EWM27986.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110327|gb|EWM27986.1|9.375e-161100.0050s ribosomal protein l21 [Nannochloropsis gaditan... [more]
gi|298714359|emb|CBJ27416.1|1.297e-2749.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210523075|dbj|GAX18126.1|8.696e-2554.37hypothetical protein FisN_25Hh108 [Fistulifera sol... [more]
gi|1210531376|dbj|GAX10044.1|1.354e-2454.37hypothetical protein FisN_25Lh108 [Fistulifera sol... [more]
gi|219113787|ref|XP_002186477.1|1.372e-2247.12predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|760437741|ref|XP_011395939.1|2.714e-2145.1050S ribosomal protein L21, mitochondrial [Auxenoch... [more]
gi|1086358360|emb|SDH09984.1|1.868e-2050.00large subunit ribosomal protein L21 [Roseospirillu... [more]
gi|1061383359|ref|WP_069186381.1|3.713e-2048.0450S ribosomal protein L21 [Terasakiella sp. PR1] >... [more]
gi|831762941|ref|XP_012750716.1|5.422e-2043.14hypothetical protein SAMD00019534_093370, partial ... [more]
gi|926790659|ref|XP_013903803.1|7.971e-2043.7550S ribosomal protein L21 [Monoraphidium neglectum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2659rna2659Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications