EWM27986.1, cds2651 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|585110327|gb|EWM27986.1| (50s ribosomal protein l21 [Nannochloropsis gaditana]) HSP 1 Score: 451.825 bits (1161), Expect = 9.375e-161 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 Query: 1 MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE 221 MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE Sbjct: 1 MLLRHFVNRWAGSVSSTMPPQAASVAIPCCKQQAFRLLSSVLVPSQCLLSCGHLPYSTVPSVSSTPPPATSPGLMGQAPPAGPKYTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIEE 221
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|298714359|emb|CBJ27416.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 115.161 bits (287), Expect = 1.297e-27 Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 0 Query: 85 YTRVLHPTGKSRGWGFTRVPVDGEALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219 +T V HP GW F VP AG E FAVI + + Q+KVTKDD++V++K+ G + G +V LVGT E TVVGRP V A V+L VEEQ +D KVI+ KK+RRK+ + QG RREVT+LRV+ I Sbjct: 151 HTVVKHPPAP--GWDFPPVP--------AGCEPTFAVIRLGNTQHKVTKDDVIVAEKLVG-DVGTTLETADVLLVGTRESTVVGRPTVPGATVKLFVEEQTRDKKVIVLKKRRRKSSKTTQGHRREVTLLRVVEI 274
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1210523075|dbj|GAX18126.1| (hypothetical protein FisN_25Hh108 [Fistulifera solaris]) HSP 1 Score: 107.457 bits (267), Expect = 8.696e-25 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0 Query: 120 AVIEVKSKQYKVTKDDIVVSDK---IEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219 AVIE+ QYKVT DD+++ +K +E + G + + ++V L+ T YT+VG P VE A V + VEE KDAKVIIFKK+RRK+ +RK GFRREVT+LRVL I Sbjct: 135 AVIELAGTQYKVTTDDLLIVNKLKPVEKFQLGSVHSLDSVLLLSTSHYTLVGLPKVEGAVVDVMVEEITKDAKVIIFKKRRRKHSQRKNGFRREVTMLRVLDI 237
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1210531376|dbj|GAX10044.1| (hypothetical protein FisN_25Lh108 [Fistulifera solaris]) HSP 1 Score: 107.071 bits (266), Expect = 1.354e-24 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 0 Query: 120 AVIEVKSKQYKVTKDDIVVSDK---IEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219 AVIE+ QYKVT DD+++ +K +E + G + + ++V L+ T YT+VG P VE A V + VEE KDAKVIIFKK+RRK+ +RK GFRREVT+LRVL I Sbjct: 135 AVIELAGTQYKVTTDDLLIVNKLKPVEKFQLGSVHSLDSVLLLSTSHYTLVGLPKVEGAVVDVMVEEITKDAKVIIFKKRRRKHSQRKNGFRREVTMLRVLDI 237
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|219113787|ref|XP_002186477.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583327|gb|ACI65947.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 100.908 bits (250), Expect = 1.372e-22 Identity = 49/104 (47.12%), Postives = 72/104 (69.23%), Query Frame = 0 Query: 119 FAVIEVKSKQYKVTKDDIVVSDKI---EGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219 FA++E+ Q+K+T DD+++ +++ + G + E+V LV + YT+VG PYV A+V L VEE DAKVI+F+K+RRKN +RK G RR+VT+LRVL I Sbjct: 110 FAILELAGSQHKITTDDLLIVNRLRPQKHFHVGSVHTLEDVMLVSSSHYTLVGMPYVRGAQVDLLVEEITMDAKVIVFRKRRRKNSQRKNGSRRDVTMLRVLDI 213
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|760437741|ref|XP_011395939.1| (50S ribosomal protein L21, mitochondrial [Auxenochlorella protothecoides] >gi|675350629|gb|KFM23069.1| 50S ribosomal protein L21, mitochondrial [Auxenochlorella protothecoides]) HSP 1 Score: 95.5153 bits (236), Expect = 2.714e-21 Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220 FAV+E+ QYKVT +D +V+++I G++ + V L GT + T++GRP V S V VEEQ D KV+IF K+RRKN RR +G R+ +T+LR+L ++ Sbjct: 41 FAVVELAGTQYKVTPNDTIVTERIPGVDVNDRITLDRVLLAGTADATIIGRPVVPSITVTAAVEEQFLDGKVLIFHKRRRKNSRRTKGHRQPLTMLRILDVD 142
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1086358360|emb|SDH09984.1| (large subunit ribosomal protein L21 [Roseospirillum parvum]) HSP 1 Score: 91.6633 bits (226), Expect = 1.868e-20 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220 FAVI+ KQYKV KDD++ +KIEG E G + V +VG VG P V+ A V QV Q KD KVI+FKKKRR+NYRRK+G R+++T++R+ I+ Sbjct: 2 FAVIKTGGKQYKVAKDDVLAIEKIEG-EDGADVMFDQVLMVGDK----VGAPTVDGAAVAAQVVRQFKDDKVIVFKKKRRQNYRRKKGHRQQLTLVRITDIQ 98
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|1061383359|ref|WP_069186381.1| (50S ribosomal protein L21 [Terasakiella sp. PR1] >gi|1059824012|emb|SCA55670.1| 50S ribosomal protein L21 [Terasakiella sp. PR1]) HSP 1 Score: 90.8929 bits (224), Expect = 3.713e-20 Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 0 Query: 119 FAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGIE 220 FA+++ KQY V ++D++V +K+ G E G E+V LVG T VG P V+ A V +V EQ K KVIIFKKKRR+NYRR +G R+E T+LR+ I+ Sbjct: 2 FAIVKTGGKQYTVAENDVIVVEKLAG-EAGSEIKLEDVLLVGAEGKTTVGTPLVKGAAVTAEVLEQGKGDKVIIFKKKRRQNYRRTKGHRQEQTVLRIKSIK 102
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|831762941|ref|XP_012750716.1| (hypothetical protein SAMD00019534_093370, partial [Acytostelium subglobosum LB1] >gi|735851348|dbj|GAM26162.1| hypothetical protein SAMD00019534_093370, partial [Acytostelium subglobosum LB1]) HSP 1 Score: 93.2041 bits (230), Expect = 5.422e-20 Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 0 Query: 115 LEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRV 216 ++ FAV+ + KQYKV K DI+++D++ ++ G + V +VGT E T++G P VE A+V +EEQ+K + V IFK KRRKNY+R GF T++R+ Sbjct: 90 VDQSFAVVHLGGKQYKVIKGDIIMADRLPNIDVGEHIVLDKVLMVGTKETTMIGTPLVEGAKVHAFIEEQSKASHVTIFKHKRRKNYKRTTGFTPLATVIRI 191
BLAST of EWM27986.1 vs. NCBI_GenBank
Match: gi|926790659|ref|XP_013903803.1| (50S ribosomal protein L21 [Monoraphidium neglectum] >gi|761974731|gb|KIZ04784.1| 50S ribosomal protein L21 [Monoraphidium neglectum]) HSP 1 Score: 93.2041 bits (230), Expect = 7.971e-20 Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 0 Query: 108 EALASAGLEAKFAVIEVKSKQYKVTKDDIVVSDKIEGLEPGVIFACENVHLVGTPEYTVVGRPYVESARVRLQVEEQAKDAKVIIFKKKRRKNYRRKQGFRREVTILRVLGI 219 EA + L+ FAV+++ QYKVT DD+++ K+ G E + A E V L+GTP+ T +GRPYV A V VE ++ KV +FKKK RK Y + QG R ++T LR+L + Sbjct: 87 EAAFTVPLQPAFAVVQLGPFQYKVTADDVILHPKLVGAEVNDVIALEKVLLLGTPQDTTIGRPYVPGACVVAAVESHFRETKVHVFKKKVRKRYSKLQGHRSQMTALRILQV 198 The following BLAST results are available for this feature:
BLAST of EWM27986.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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