rna2655, rna2655 (mRNA) Nannochloropsis gaditana

Overview
Namerna2655
Unique Namerna2655
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1830
Alignment locationCM002459.1:894808..896433 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g20.7917.mrna
Orig protein idgnl|cribi|Naga_100008g20.7917
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:894808..896433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g20gene2539Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28025.1cds2647Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2655rna2655-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2655 ID=rna2655|Name=rna2655|organism=Nannochloropsis gaditana|type=mRNA|length=1830bp
ATGCCCAGCGGCGATCAAGTGCCACGTCTGCCTCATGAGGACTTGGAAGA
AGCAGTAGTGCAGTACTCGGAAGAAGCATACGACGCAAACCGACACAAGC
ATGAGAACTTTGATGTGCAGCATCCGCAGTGGTATCCACCGGGTCCCTCT
AGCAGCAGCACCAGCAGCGTCACCTGCTCCACGACGCCCGTGCTGGACAC
GGACGAAGAAGGAAGCGGGGGTACTTTGGGTACCGGCGGGGCGCCACGCG
TGGTCATTTTCACCGCCGCCTATTATGTGTGCGACGGAGTGAGCCTTACC
ATTCGGAAGCTCCGGGCGCATCTACAAAGCCGAGGGATAGCCTCTCGGGT
GGTATCATGCGGGCCTGCGGGGTGGAGCGAAACGGATGTCTTCACCGTTC
CTTCCATCCCCTTGCCGATCATCAACGCGGACGATAACTTTGGATATTCT
CTGGGCATAAGACTCACACCGGAGTGCAAAGCTCAGATCAAAGCCTTCAA
CCCCTCTGTCATCCACTTTACTGTCCCCGACTTCTTGGCCCTGGACGCGC
TCCGGTGGGCGAAGGCGGAGCGAATCCCCGTGATGGGCACCTGGCACTCC
AATTATGCAGACTACCTGCAATTCTACCATTTAAGCGTCATCCGCCTCCC
GGTAGAACGCTTCATCCGCAGCTTCTACGTGAACATGCCTATCTATGTTC
CGACGCCGTTCGTGCGCAAGCGCTTGGTGGACAGCGGGTTCCCCGAGAAT
CGTGTCTCCCTCTGGGGCCGCGGGGTTGACCTGAAAATGTTTAACCCGAA
CTTCCGCTCCATGGCTTTCAGGCGTGGCCGCGGCATTGCAGACGACGAGG
TGGTGATCCTGTGGGTGGGGCGACTGGTGAAGGAAAAATCTCCGGATATA
TGGGCCGAGGTAATCCGACGGTTGGACCAGGAGGGTTTGAAATTTCGAGC
GTTAGTGGTGGGGTCAGGGTCTTACGAGGAGCACATGAAGCAGCTGCCAC
GGACCGAGCATCTGGGATGGATGAGCGGCGCGGCCCTGGCGGAGGTCTAT
GCCTCCGTTGACCTGTTCCTCTTTCCCAGCGAGGTCGAGACCTTCGGAAA
TGTGACCTTGGAGGCACTGGCCAGTGGGGTGCCATGCATTGCCTCAGCAG
GCTGCTCAGGCCATCTTGTGCACCATGGAGTCAACGGCTTTGTCATCTCT
CGAGCCGACGTGGACGAGTACCATTCCTTGACGCGGGAGCTGGTCGTGAA
TGGACCTCTGCGTGCCCGCTTTGCGGAGAAAGCAAGGGGATCGATCGTCA
GCCTTGAGCACGATCGAGTCATGGACATGATGGTAGCGAACTACGAGGGT
GTGGTCCAGGCGTACCACCGCCCAGGTGGGGAAGGCTGCAACAGTCGGAG
GGGCGGATGGGGCGATGTTTATATTATGTTGGTGTATCATTTTTTCTCCT
TTTTAATGATGCTGGGAACACCGCTGATGAAGGCCTATGTGGCGATAGCA
CGCATCCTTTGTGGAATCATTTCGTGCTCGGGTGCAGATTGGTTTGCTCG
GAAGATGCGAAGCGCAGCTCACCTATCACGGACCCATGCTCGGAAGGGAA
GGAAATGGGATGACATCGCGAGAGCGGATGAGAATATTGGTTGTTTGTGT
TTGGCTATCTGTGCTGGTGGTTCTGTATCACACGTACATGGCTGCGGGTT
GGACCACTACTATGCTGGGAGAGCACGGAAACGCCTCAACGGAGGGGAGT
CGGTAACGGTAAAATATTCAGCTCGACGCAGTTTTGATGACGAGTCGGGT
GTGCCCTCATTAGCCAATGTGGTTGCGTAA
back to top

protein sequence of rna2655

>rna2655-protein ID=rna2655-protein|Name=rna2655|organism=Nannochloropsis gaditana|type=polypeptide|length=541bp
MSSSSEVPSVLLPVQDVDVLLRRLLAPEKEHESERMDCGYGREHIYDSDE
LLLSNVASLLAFPLGGICSIFLLLLGTYTHFCTACRRFIVAWADQIEATW
QSLRLSRFHLQDHRNINIKRPKLMPRMISHGTNSKTGLYWCGLGDVCERD
DLIFTPYFDPKKPSVVYVHGYQPRTIIRCFRESLNWGDNDNEFGLDMNAA
DHWLKAGWNVGVFYWSSYADEDYIHDAEAKIWSNQTSVGMRYRSLTKCGT
RVKWRYVSSDVPCVAHQLASVLRQRFTSDTAGYRLVGHSLGAQVVIHAAT
LLARAKRRQANAVCLQDGIVNCDVTLDEKTRGKVQGVPNVAPGMEYLGPG
GTSDADYIPYTVGSSRTREASFLLPTRIALLDAFFTLEPKRYVGWRSLAS
VLKEELANLVQEEDVVFEQYRTSLLSFAANFHLKPFTAFFDLNPKHIPWW
KLRARHVCAPYLYFHSMASLEVGRRVMKDVGGAWTAFWGQIYHQDMLEDE
DSFRGIATTPDAHLRLLMQRYAMEGIWELFTHISCYPLSRH
back to top

mRNA from alignment at CM002459.1:894808..896433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2655 ID=rna2655|Name=rna2655|organism=Nannochloropsis gaditana|type=mRNA|length=1626bp|location=Sequence derived from alignment at CM002459.1:894808..896433- (Nannochloropsis gaditana)
ATGTCATCGTCAAGTGAAGTGCCCTCAGTACTTTTGCCGGTCCAAGACGT
GGATGTCCTCCTACGCAGACTCCTGGCACCGGAGAAGGAACACGAAAGCG
AACGGATGGATTGTGGATATGGTAGAGAACACATATATGATTCTGATGAG
CTTCTCTTGTCCAATGTGGCGTCGTTGCTGGCTTTCCCCCTTGGTGGGAT
CTGCTCGATCTTTCTGTTGCTCTTGGGAACGTACACACATTTTTGCACAG
CTTGCAGGCGGTTTATCGTGGCTTGGGCCGATCAGATCGAGGCGACGTGG
CAATCTTTGAGACTATCCCGTTTTCACCTGCAGGATCATAGGAATATCAA
TATCAAACGACCAAAGCTCATGCCACGCATGATATCACACGGAACAAATA
GTAAGACAGGACTGTATTGGTGTGGTTTGGGAGATGTCTGCGAACGCGAC
GATCTCATTTTCACACCGTATTTCGACCCCAAAAAGCCTTCTGTCGTATA
TGTGCATGGTTATCAGCCGCGAACCATCATTCGATGTTTTCGTGAGAGCC
TGAATTGGGGGGACAATGACAACGAGTTTGGGCTGGATATGAACGCGGCG
GATCATTGGCTGAAAGCTGGTTGGAACGTAGGTGTTTTTTACTGGTCTTC
ATACGCGGATGAAGACTACATACACGATGCCGAGGCCAAGATTTGGTCGA
ATCAGACGTCAGTGGGCATGCGCTATCGGAGTTTAACAAAATGCGGGACC
AGAGTAAAGTGGCGATACGTCTCCTCAGACGTGCCTTGTGTCGCGCATCA
ACTCGCAAGCGTACTTCGTCAGCGCTTTACTTCCGATACGGCAGGGTATC
GGCTTGTGGGGCATAGTTTGGGCGCACAGGTCGTCATTCATGCTGCCACG
TTGCTTGCGCGGGCGAAACGCCGGCAGGCAAACGCCGTCTGCTTGCAAGA
TGGGATTGTCAATTGCGACGTGACCCTAGACGAGAAAACAAGGGGAAAAG
TGCAGGGAGTTCCGAATGTTGCGCCCGGAATGGAATACTTAGGACCAGGA
GGCACGTCTGATGCCGATTATATTCCCTACACGGTCGGCTCCTCGCGCAC
TAGGGAGGCTTCTTTCCTCTTACCCACTCGGATTGCGTTGTTGGACGCCT
TCTTCACGTTGGAGCCCAAGAGATACGTCGGGTGGCGCTCGCTAGCTAGT
GTTTTGAAAGAAGAATTGGCGAACCTGGTCCAAGAGGAGGATGTTGTGTT
TGAGCAATACCGGACTTCTCTCCTGTCCTTTGCGGCCAATTTTCACCTGA
AACCCTTCACAGCCTTTTTTGACTTGAACCCCAAGCATATCCCGTGGTGG
AAGCTCCGGGCCCGCCATGTTTGTGCACCGTACCTGTATTTTCATTCAAT
GGCTTCCCTAGAGGTGGGAAGAAGGGTGATGAAGGATGTGGGCGGGGCTT
GGACGGCTTTCTGGGGCCAAATCTACCATCAAGACATGCTCGAGGATGAA
GACTCTTTTCGCGGCATAGCCACAACACCCGACGCGCATTTGCGCTTGCT
CATGCAGAGATATGCAATGGAGGGAATATGGGAACTTTTCACTCATATTT
CATGCTACCCTCTCTCTCGGCATTAG
back to top

Coding sequence (CDS) from alignment at CM002459.1:894808..896433-

>rna2655 ID=rna2655|Name=rna2655|organism=Nannochloropsis gaditana|type=CDS|length=1626bp|location=Sequence derived from alignment at CM002459.1:894808..896433- (Nannochloropsis gaditana)
ATGTCATCGTCAAGTGAAGTGCCCTCAGTACTTTTGCCGGTCCAAGACGT
GGATGTCCTCCTACGCAGACTCCTGGCACCGGAGAAGGAACACGAAAGCG
AACGGATGGATTGTGGATATGGTAGAGAACACATATATGATTCTGATGAG
CTTCTCTTGTCCAATGTGGCGTCGTTGCTGGCTTTCCCCCTTGGTGGGAT
CTGCTCGATCTTTCTGTTGCTCTTGGGAACGTACACACATTTTTGCACAG
CTTGCAGGCGGTTTATCGTGGCTTGGGCCGATCAGATCGAGGCGACGTGG
CAATCTTTGAGACTATCCCGTTTTCACCTGCAGGATCATAGGAATATCAA
TATCAAACGACCAAAGCTCATGCCACGCATGATATCACACGGAACAAATA
GTAAGACAGGACTGTATTGGTGTGGTTTGGGAGATGTCTGCGAACGCGAC
GATCTCATTTTCACACCGTATTTCGACCCCAAAAAGCCTTCTGTCGTATA
TGTGCATGGTTATCAGCCGCGAACCATCATTCGATGTTTTCGTGAGAGCC
TGAATTGGGGGGACAATGACAACGAGTTTGGGCTGGATATGAACGCGGCG
GATCATTGGCTGAAAGCTGGTTGGAACGTAGGTGTTTTTTACTGGTCTTC
ATACGCGGATGAAGACTACATACACGATGCCGAGGCCAAGATTTGGTCGA
ATCAGACGTCAGTGGGCATGCGCTATCGGAGTTTAACAAAATGCGGGACC
AGAGTAAAGTGGCGATACGTCTCCTCAGACGTGCCTTGTGTCGCGCATCA
ACTCGCAAGCGTACTTCGTCAGCGCTTTACTTCCGATACGGCAGGGTATC
GGCTTGTGGGGCATAGTTTGGGCGCACAGGTCGTCATTCATGCTGCCACG
TTGCTTGCGCGGGCGAAACGCCGGCAGGCAAACGCCGTCTGCTTGCAAGA
TGGGATTGTCAATTGCGACGTGACCCTAGACGAGAAAACAAGGGGAAAAG
TGCAGGGAGTTCCGAATGTTGCGCCCGGAATGGAATACTTAGGACCAGGA
GGCACGTCTGATGCCGATTATATTCCCTACACGGTCGGCTCCTCGCGCAC
TAGGGAGGCTTCTTTCCTCTTACCCACTCGGATTGCGTTGTTGGACGCCT
TCTTCACGTTGGAGCCCAAGAGATACGTCGGGTGGCGCTCGCTAGCTAGT
GTTTTGAAAGAAGAATTGGCGAACCTGGTCCAAGAGGAGGATGTTGTGTT
TGAGCAATACCGGACTTCTCTCCTGTCCTTTGCGGCCAATTTTCACCTGA
AACCCTTCACAGCCTTTTTTGACTTGAACCCCAAGCATATCCCGTGGTGG
AAGCTCCGGGCCCGCCATGTTTGTGCACCGTACCTGTATTTTCATTCAAT
GGCTTCCCTAGAGGTGGGAAGAAGGGTGATGAAGGATGTGGGCGGGGCTT
GGACGGCTTTCTGGGGCCAAATCTACCATCAAGACATGCTCGAGGATGAA
GACTCTTTTCGCGGCATAGCCACAACACCCGACGCGCATTTGCGCTTGCT
CATGCAGAGATATGCAATGGAGGGAATATGGGAACTTTTCACTCATATTT
CATGCTACCCTCTCTCTCGGCATTAG
back to top
Synonyms
Publications