rna2648, rna2648 (mRNA) Nannochloropsis gaditana

Overview
Namerna2648
Unique Namerna2648
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002459.1:878266..880071 -

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Properties
Property NameValue
Productmechanosensitive ion channel
Orig transcript idgnl|cribi|Naga_100008g13.7820.mrna
Orig protein idgnl|cribi|Naga_100008g13.7820
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:878266..880071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g13gene2532Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2648rna2648-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27928.1cds2640Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2648 ID=rna2648|Name=rna2648|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
ATGCGCCGTGTCGCTGCTGCTCTTGCCGCCCCCACCTCGACGAGCAAACG
CATGTCTCCAACACCCCTCGTGGCCGTTGCCCAGCTGACCGCGACGGATG
ACCGAAAAGAAAATTTACGTGTGTGCCGAGACCTGGCGTTTCAGGCCAAA
GCCGCTGGCGCGGGCTTACTGTGCCTCCCTGAGTGCTTCTCGTTCCTTGG
AAGGTCGTGGCGCGAGACGGTGGCGGTCGGGCAGGCCTTGGAGGGCTCCG
TTATAAGTGAGATGCGGGCGTTGGCCAAGGAACTCAAGCTTTGGCTGTCC
CTCGGAGGCTTCCCTGAGGCGGTTTCTTCAGCCGAGCGCGGAGATGCAAA
AGTCTACAACACGCATGTCATCTTGGACGATGACGGATGCATCCAGGCTC
GCTACCGAAAAATACATCTTTTCGACGTCGATGTGCCCAACGGCCCAGTG
CTGCAGGAGTCTCGATACACACTCCCCGGCGACAGAGTGGTAGTCGTCGA
CTCCCCCGTCGGCCGCTTGGGCCTCTCTACTTGCTATGATTTACGTTTTC
CAGAAATGTACGAGGCACTCTTGCGACAAGGAGCTGAGATTCTACTTGTG
CCGTCTGCGTTCACGGTGCCAACGGGGAAAGCTCATTGGGAAGTGTTGCT
CCGGGCACGAGCGATTGAGACGCAGTGCTATGTGGTTGCAGCCGCGCAAG
TAGGACAGCATAACGAGAAACGAGCCTCGTATGGACATTCTATGGTCGTT
GATCCTTGGGGGAGGGTGTTATCGGACGCAGGAGGGGAGACGTCTCCGAT
TTTGTCGGTGGCAGAAATCGATTTGACAAAGCTCCATGAAATCAGGGCTA
AAATGCCCATCAAATCGCACCGACGGAGAGATCTTTTCTACGGCAGATTT
CATGGCGGCGAATCGAGGTCGGATAAGTGGTAA
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protein sequence of rna2648

>rna2648-protein ID=rna2648-protein|Name=rna2648|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFAT
KTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPH
LHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFK
HHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHL
HMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRF
IARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNV
LSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAY
QVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPP
R
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mRNA from alignment at CM002459.1:878266..880071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2648 ID=rna2648|Name=rna2648|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp|location=Sequence derived from alignment at CM002459.1:878266..880071- (Nannochloropsis gaditana)
GAATGTTAAAAATGCTTGTGTGGACGTGTCCAATGTGTGCTATATATTTT
GTCGGTGCGGAGCGCAAGCATGCACTGGGCTGCATGGAGATTTTGTCTTT
TTAGGAAGCCATCGCTCGTGATACTTGCCGAGTGACGGGCAGTAAGAAGT
ACTTGTTCTTACTGTGTACCATGTTCCTTCCCACGCGCTGCTTGTTAAAT
GCTTCAACCTCATAATGCAGAAACACAGGCAAGGTATAGAAGAAGGCCAT
CAATCAAGTACGCTGGGGTACATCACCTCCATTCATTGAAGATGCGTCAA
CTACCCTCTTCGTATTTTGCCGTAGCTCTCCTTGTTGCTTTTGCGACAAA
GACAGTGGTGGCAAACAGAGGACCAGGAGCATCCACAAACGGCCTTGCCT
CTCCTGCGACTCAGCCTGTCTCAACGACCTCCGGCGCCTGCACGAGGAAG
TATGGTATGGGCAGCCGCCTGCATCTTCCACACATGCACGCCCCGCACCT
ACACATTCCCAAGGGTGGCTTCCTCTTCAGTCCATTCCGTCACCACGGGG
GTGCTCATGCCGTTGGAAATCTGGCCAAAGTGACAGAAAATAGTGGGGGC
CACACGCCCTCGATATTCTCCGGAATGTCCGTCTATCATATGTTCAAGCA
TCACTCTGCCGATAGGCGCGATCAAGCTAGCGCTGCAGGCCTTGCTGTGA
GCCATCCCACGGGTGGCAGTGTGGCGACCGCTGAGCGCACACTTGGACAG
GGTGATGGCAAACAAGAAAACCAAAATTCGCCGCATTACCCGCACCTGCA
CATGAAGAGTTTCTTTCAATCCCTGAGAAGCTGGGTCTCCTTCAAACAAT
ACTGCTGCGGTGTTCGGGACTTTTTGCTCATCGCGCGTCCTCTCGAGACC
TTCCTCTTGCGCACAGGCGCCGTCCACGACCGAGACTTGAGCCGTTTCAT
CGCCCGAGCTACGGCGTTTGTGATCATCTCCATGATAATCACCTCTATAC
TCGGCACGCTGGGACTGGACACGAAGCCCATCATTGCCGGCCTGGGGGTC
TCAGGGTTCATCGGTGAGTCTGATGAGGGACGGTCCAATGCCTCACCTCT
GGTCGCTCTTAACCCTTTCCCAGGGTTATGCCTTCATCCTAGCGCCTTTC
TGACGTTAACGCCCTGATTTCTACACGCTCCCTGTAACTTACCCTTGTCC
AGTCGGTTTCGCACTGAAAGAAATTGCCACCAACGTTCTCTCCGGGATCC
TCCTCGTCTTTCAGAGGCCTTTCAAGACGGGGTGGAAAATCCGCGTAGGG
GCCTACACGGGCACCGTGCTGTCCATCGACTCCCGCTACGTCCGTCTTCT
CACAGAAGAAGATGCGATGATTCTCGTACCGGCCTACCAGGTGTACACTC
AGCCAATAACAGTCATCGAAAGGAAGGACAAGGCCGGCCGTGTCATTCAC
TCGGCCGGCGCACACCCCGGAGTGACCCCCACGACACCTCATCCTTCCCC
CCCGCCTGCTGCTGCTGCGAAGAGCACGCCCCCTCCAAGGTGAAGACTGC
GGACCGGTATTACTTTTGTTGATATCGTGGAAGGTGGAGGAAGTCAGGGT
GGCTCTGTACTTTGGTTGCACAAAGGCGGGTCTGTGATTTATAAATTGAC
ATGAAAATTCTCAATAATTCAAAAAGGCTAAGAGCAACGAATCAACTCGC
ACAAACAAAAAGGAAGTTGTTAACCGGTCGGCAAGGTTTTTCAATTTCAT
CGTCAGCGATAACTCGACTTGCGCGTGCGCTTTCTTCTTATTTATTCCTC
TTCATT
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Coding sequence (CDS) from alignment at CM002459.1:878266..880071-

>rna2648 ID=rna2648|Name=rna2648|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002459.1:878266..880071- (Nannochloropsis gaditana)
TCGGTTTCGCACTGAAAGAAATTGCCACCAACGTTCTCTCCGGGATCCTC
CTCGTCTTTCAGAGGCCTTTCAAGACGGGGTGGAAAATCCGCGTAGGGGC
CTACACGGGCACCGTGCTGTCCATCGACTCCCGCTACGTCCGTCTTCTCA
CAGAAGAAGATGCGATGATTCTCGTACCGGCCTACCAGGTGTACACTCAG
CCAATAACAGTCATCGAAAGGAAGGACAAGGCCGGCCGTGTCATTCACTC
GGCCGGCGCACACCCCGGAGTGACCCCCACGACACCTCATCCTTCCCCCC
CGCCTGCTGCTGCTGCGAAGAGCACGCCCCCTCCAAGGTGAATGCTTCAA
CCTCATAATGCAGAAACACAGGCAAGGTATAGAAGAAGGCCATCAATCAA
GTACGCTGGGGTACATCACCTCCATTCATTGAAGATGCGTCAACTACCCT
CTTCGTATTTTGCCGTAGCTCTCCTTGTTGCTTTTGCGACAAAGACAGTG
GTGGCAAACAGAGGACCAGGAGCATCCACAAACGGCCTTGCCTCTCCTGC
GACTCAGCCTGTCTCAACGACCTCCGGCGCCTGCACGAGGAAGTATGGTA
TGGGCAGCCGCCTGCATCTTCCACACATGCACGCCCCGCACCTACACATT
CCCAAGGGTGGCTTCCTCTTCAGTCCATTCCGTCACCACGGGGGTGCTCA
TGCCGTTGGAAATCTGGCCAAAGTGACAGAAAATAGTGGGGGCCACACGC
CCTCGATATTCTCCGGAATGTCCGTCTATCATATGTTCAAGCATCACTCT
GCCGATAGGCGCGATCAAGCTAGCGCTGCAGGCCTTGCTGTGAGCCATCC
CACGGGTGGCAGTGTGGCGACCGCTGAGCGCACACTTGGACAGGGTGATG
GCAAACAAGAAAACCAAAATTCGCCGCATTACCCGCACCTGCACATGAAG
AGTTTCTTTCAATCCCTGAGAAGCTGGGTCTCCTTCAAACAATACTGCTG
CGGTGTTCGGGACTTTTTGCTCATCGCGCGTCCTCTCGAGACCTTCCTCT
TGCGCACAGGCGCCGTCCACGACCGAGACTTGAGCCGTTTCATCGCCCGA
GCTACGGCGTTTGTGATCATCTCCATGATAATCACCTCTATACTCGGCAC
GCTGGGACTGGACACGAAGCCCATCATTGCCGGCCTGGGGGTCTCAGGGT
TCATCGTCGGTTTCGCACTGAAAGAAATTGCCACCAACGTTCTCTCCGGG
ATCCTCCTCGTCTTTCAGAGGCCTTTCAAGACGGGGTGGAAAATCCGCGT
AGGGGCCTACACGGGCACCGTGCTGTCCATCGACTCCCGCTACGTCCGTC
TTCTCACAGAAGAAGATGCGATGATTCTCGTACCGGCCTACCAGGTGTAC
ACTCAGCCAATAACAGTCATCGAAAGGAAGGACAAGGCCGGCCGTGTCAT
TCACTCGGCCGGCGCACACCCCGGAGTGACCCCCACGACACCTCATCCTT
CCCCCCCGCCTGCTGCTGCTGCGAAGAGCACGCCCCCTCCAAGGTGAATG
CTTCAACCTCATAATGCAGAAACACAGGCAAGGTATAGAAGAAGGCCATC
AATCAAGTACGCTGGGGTACATCACCTCCATTCATTGAAGATGCGTCAAC
TACCCTCTTCGTATTTTGCCGTAGCTCTCCTTGTTGCTTTTGCGACAAAG
ACAGTGGTGGCAAACAGAGGACCAGGAGCATCCACAAACGGCCTTGCCTC
TCCTGCGACTCAGCCTGTCTCAACGACCTCCGGCGCCTGCACGAGGAAGT
ATGGTATGGGCAGCCGCCTGCATCTTCCACACATGCACGCCCCGCACCTA
CACATTCCCAAGGGTGGCTTCCTCTTCAGTCCATTCCGTCACCACGGGGG
TGCTCATGCCGTTGGAAATCTGGCCAAAGTGACAGAAAATAGTGGGGGCC
ACACGCCCTCGATATTCTCCGGAATGTCCGTCTATCATATGTTCAAGCAT
CACTCTGCCGATAGGCGCGATCAAGCTAGCGCTGCAGGCCTTGCTGTGAG
CCATCCCACGGGTGGCAGTGTGGCGACCGCTGAGCGCACACTTGGACAGG
GTGATGGCAAACAAGAAAACCAAAATTCGCCGCATTACCCGCACCTGCAC
ATGAAGAGTTTCTTTCAATCCCTGAGAAGCTGGGTCTCCTTCAAACAATA
CTGCTGCGGTGTTCGGGACTTTTTGCTCATCGCGCGTCCTCTCGAGACCT
TCCTCTTGCGCACAGGCGCCGTCCACGACCGAGACTTGAGCCGTTTCATC
GCCCGAGCTACGGCGTTTGTGATCATCTCCATGATAATCACCTCTATACT
CGGCACGCTGGGACTGGACACGAAGCCCATCATTGCCGGCCTGGGGGTCT
CAGGGTTCATCG
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Synonyms
Publications