EWM27928.1, cds2640 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|585110269|gb|EWM27928.1| (mechanosensitive ion channel [Nannochloropsis gaditana]) HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0 Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query: 1 MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401
MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR
Sbjct: 1 MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|914960565|ref|XP_013236979.1| (hypothetical protein DI09_66p160 [Mitosporidium daphniae] >gi|692167387|gb|KGG50552.1| hypothetical protein DI09_66p160 [Mitosporidium daphniae]) HSP 1 Score: 112.079 bits (279), Expect = 2.361e-24 Identity = 58/133 (43.61%), Postives = 89/133 (66.92%), Query Frame = 0
Query: 226 LLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRV----GAYTGTVLSIDSRYVRL-LTEEDAMILVPAYQVY 353
L + P+E ++R+ D DL+R ++ A + + +++GTLG+DT PII G+GV+GF +GFALKEIATN LSG+LL+F++PF+ G +++ G GTV +ID R+V L L +A++LVP+ VY
Sbjct: 68 LALGPPIERLIIRSRMTADTDLARLASKTIAALTYGFLGVTVMGTLGIDTTPIITGIGVTGFTIGFALKEIATNFLSGVLLMFEKPFEKGCHLKIHGGGGGIEGTVTAIDLRHVHLKLENSEAIVLVPSSVVY 200
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|528891118|gb|EPZ31600.1| (Alkaline-phosphatase-like domain-containing protein [Rozella allomycis CSF55]) HSP 1 Score: 112.464 bits (280), Expect = 2.119e-23 Identity = 50/119 (42.02%), Postives = 81/119 (68.07%), Query Frame = 0
Query: 228 IARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMIL 346
+ +P+ +F+ RT + D + + + +T F + ++I S+LG+LG+D +P+I GLG++GF VGFALK+I N +SG LL+FQ+PFK I+ G+Y G V+ +D +YV L T E ++L
Sbjct: 24 LKKPISSFITRTRLIKDDHMVQLVTSSTVFTVKAIIAMSVLGSLGVDMRPVITGLGITGFTVGFALKDIGANFVSGFLLLFQKPFKMNDVIKSGSYQGKVIGMDVKYVHLQTPEGRILL 142
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|498164184|ref|WP_010478340.1| (mechanosensitive ion channel [Acaryochloris sp. CCMEE 5410]) HSP 1 Score: 95.1301 bits (235), Expect = 1.314e-19 Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 0
Query: 225 FLLIARPLETFLLRTGAVH--DRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
F LI+ ++ + R G D+D+ I + VII IT LGT+G+D I+AGLG++GF +GFALK++ +N+LSGIL++ RPF G I V GTV ID RY L T D IL+P ++T PITV
Sbjct: 29 FWLISLVIQKIIRRLGKRSHLDQDIVNLIRQVATAVIIIFGITVALGTMGVDVSAIVAGLGLTGFALGFALKDVLSNLLSGILVLTYRPFVRGDWISVSGLEGTVHEIDLRYTTLET-PDERILIPNSTLFTNPITV 164
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|985798923|dbj|BAU47770.1| (mechanosensitive ion channel MscS [Sulfurifustis variabilis]) HSP 1 Score: 92.0485 bits (227), Expect = 1.438e-18 Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 0
Query: 250 FIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
++RA F +I + + LGTLG+D I+AGLG++GF +GFAL++ +N+L+G+LL+ RPF I+V + GTV++ID RY L A IL+P +++T PITV
Sbjct: 57 LLSRAAHFTLIVFGVVTALGTLGIDISAIVAGLGLTGFALGFALRDTISNLLAGVLLLVYRPFDINHHIQVSGFEGTVINIDLRYTT-LESPTARILIPNSKLFTDPITV 165
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|401420892|ref|XP_003874935.1| (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >gi|322491171|emb|CBZ26436.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103]) HSP 1 Score: 88.1965 bits (217), Expect = 5.059e-17 Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 0
Query: 239 TGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGA----YTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKD-KAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401
TG + D +R TA + + + ++LGTLG+DT P+IA GV+G +GFA K+ N ++ I L QR +TG K+ +G +GTV+ D+RY+ L EE A++ VP V +V+ KD + S GA+ S AAA + PP+
Sbjct: 12 TGLIKDPGQRSIASRVTALAVEGVAVFTVLGTLGVDTSPLIAAAGVTGATIGFACKDFGANFVASIALSGQRALRTGNKVSIGVGVNIVSGTVVDWDTRYIYLRNEEKALVCVPNNVVLN---SVVMWKDPNTAAPLTSKGAYQA------KDSKEWNAAASAAEPPQ 170
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|910761202|gb|KNH08048.1| (hypothetical protein XU18_1378 [Perkinsela sp. CCAP 1560/4]) HSP 1 Score: 87.8113 bits (216), Expect = 6.070e-17 Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 0
Query: 232 LETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQ--RPFKTGWKIRVG----AYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
F +T + D + +++A+A SMI+ + LGT G+DT PI+ GLGV G +GFA ++I N+++G++L F R F G K+R+G + G V S D R++ LL E + VP VY+ ITV
Sbjct: 11 FNIFFTKTNLIPDSAVRDIVSKASATAAWSMILFTALGTAGIDTSPILTGLGVGGASLGFAARDIGANLMAGLMLAFNRHRAFGHGRKLRIGSGPSSIEGVVCSWDLRHLILLNSEMERVYVPNSMVYSSIITV 144
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|1200418492|gb|OUV35542.1| (mechanosensitive ion channel [Verrucomicrobia bacterium TMED102]) HSP 1 Score: 87.4261 bits (215), Expect = 6.298e-17 Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 0
Query: 244 DRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
D + +AR I + + + LGT+G+D I+A LG++GF VGFALK+ +N+LSG+L++ RPF+ G I V ++ G V ID RY L ++D ILVP ++T PI +
Sbjct: 38 DSSVVNLLARVANVGIWIVGLVTALGTVGIDVSAIVASLGLTGFAVGFALKDSISNLLSGVLILIYRPFRVGQSINVKSFEGKVTVIDLRYTT-LEQDDEKILVPNSLLFTNPINI 152
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|1072779946|ref|WP_069969809.1| (mechanosensitive ion channel [Desertifilum sp. IPPAS B-1220] >gi|1070568414|gb|OEJ72616.1| mechanosensitive ion channel [Desertifilum sp. IPPAS B-1220]) HSP 1 Score: 87.0409 bits (214), Expect = 1.385e-16 Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 268 LGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDK 365
LGTLG+D ++AGLG++GF +G ALK+I +N+LSG+L++ +PF+ I+VG G VL ID RY L ++ IL+P ++T I +I++++K
Sbjct: 74 LGTLGIDVSALVAGLGLTGFALGLALKDIVSNLLSGVLILIYQPFRRNDWIKVGPTEGKVLQIDLRYTT-LQADNQKILIPNSSLFTNTICIIDKEEK 170
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|146105002|ref|XP_001469960.1| (conserved hypothetical protein [Leishmania infantum JPCM5] >gi|398025106|ref|XP_003865714.1| hypothetical protein, conserved [Leishmania donovani] >gi|134074330|emb|CAM73077.1| conserved hypothetical protein [Leishmania infantum JPCM5] >gi|322503951|emb|CBZ39038.1| hypothetical protein, conserved [Leishmania donovani]) HSP 1 Score: 85.8853 bits (211), Expect = 2.726e-16 Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 239 TGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGA----YTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKD 364
TG + D +R TA + + + ++LGTLG+DT P+IA GV+G +GFA K+ N ++ I L QR +TG K+ +G +GTV+ D+RY+ L EE A++ VP V +V+ KD
Sbjct: 12 TGIIKDPGQRSIASRVTALAVEGVAVFTVLGTLGVDTSPLIAAAGVTGATIGFACKDFGANFVASIALSGQRALRTGNKVSIGVGPNIVSGTVVDWDTRYIYLRNEERAVVCVPNNVVLN---SVVMWKD 138 The following BLAST results are available for this feature:
BLAST of EWM27928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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