EWM27928.1, cds2640 (CDS) Nannochloropsis gaditana

Overview
NameEWM27928.1
Unique Namecds2640
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:879009..879873 -
Alignment locationCM002459.1:878529..878869 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27928.1
Productmechanosensitive ion channel
Orig transcript idgnl|cribi|Naga_100008g13.7820.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:879009..879873 -
CM002459.1supercontigCM002459.1:878529..878869 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR011014MscS_channel_TM-2
IPR006685MscS_channel
Homology
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|585110269|gb|EWM27928.1| (mechanosensitive ion channel [Nannochloropsis gaditana])

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401
            MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR
Sbjct:    1 MLQPHNAETQARYRRRPSIKYAGVHHLHSLKMRQLPSSYFAVALLVAFATKTVVANRGPGASTNGLASPATQPVSTTSGACTRKYGMGSRLHLPHMHAPHLHIPKGGFLFSPFRHHGGAHAVGNLAKVTENSGGHTPSIFSGMSVYHMFKHHSADRRDQASAAGLAVSHPTGGSVATAERTLGQGDGKQENQNSPHYPHLHMKSFFQSLRSWVSFKQYCCGVRDFLLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDKAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|914960565|ref|XP_013236979.1| (hypothetical protein DI09_66p160 [Mitosporidium daphniae] >gi|692167387|gb|KGG50552.1| hypothetical protein DI09_66p160 [Mitosporidium daphniae])

HSP 1 Score: 112.079 bits (279), Expect = 2.361e-24
Identity = 58/133 (43.61%), Postives = 89/133 (66.92%), Query Frame = 0
Query:  226 LLIARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRV----GAYTGTVLSIDSRYVRL-LTEEDAMILVPAYQVY 353
            L +  P+E  ++R+    D DL+R  ++  A +    +  +++GTLG+DT PII G+GV+GF +GFALKEIATN LSG+LL+F++PF+ G  +++    G   GTV +ID R+V L L   +A++LVP+  VY
Sbjct:   68 LALGPPIERLIIRSRMTADTDLARLASKTIAALTYGFLGVTVMGTLGIDTTPIITGIGVTGFTIGFALKEIATNFLSGVLLMFEKPFEKGCHLKIHGGGGGIEGTVTAIDLRHVHLKLENSEAIVLVPSSVVY 200          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|528891118|gb|EPZ31600.1| (Alkaline-phosphatase-like domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 112.464 bits (280), Expect = 2.119e-23
Identity = 50/119 (42.02%), Postives = 81/119 (68.07%), Query Frame = 0
Query:  228 IARPLETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMIL 346
            + +P+ +F+ RT  + D  + + +  +T F + ++I  S+LG+LG+D +P+I GLG++GF VGFALK+I  N +SG LL+FQ+PFK    I+ G+Y G V+ +D +YV L T E  ++L
Sbjct:   24 LKKPISSFITRTRLIKDDHMVQLVTSSTVFTVKAIIAMSVLGSLGVDMRPVITGLGITGFTVGFALKDIGANFVSGFLLLFQKPFKMNDVIKSGSYQGKVIGMDVKYVHLQTPEGRILL 142          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|498164184|ref|WP_010478340.1| (mechanosensitive ion channel [Acaryochloris sp. CCMEE 5410])

HSP 1 Score: 95.1301 bits (235), Expect = 1.314e-19
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 0
Query:  225 FLLIARPLETFLLRTGAVH--DRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
            F LI+  ++  + R G     D+D+   I +    VII   IT  LGT+G+D   I+AGLG++GF +GFALK++ +N+LSGIL++  RPF  G  I V    GTV  ID RY  L T  D  IL+P   ++T PITV
Sbjct:   29 FWLISLVIQKIIRRLGKRSHLDQDIVNLIRQVATAVIIIFGITVALGTMGVDVSAIVAGLGLTGFALGFALKDVLSNLLSGILVLTYRPFVRGDWISVSGLEGTVHEIDLRYTTLET-PDERILIPNSTLFTNPITV 164          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|985798923|dbj|BAU47770.1| (mechanosensitive ion channel MscS [Sulfurifustis variabilis])

HSP 1 Score: 92.0485 bits (227), Expect = 1.438e-18
Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 0
Query:  250 FIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
             ++RA  F +I   + + LGTLG+D   I+AGLG++GF +GFAL++  +N+L+G+LL+  RPF     I+V  + GTV++ID RY   L    A IL+P  +++T PITV
Sbjct:   57 LLSRAAHFTLIVFGVVTALGTLGIDISAIVAGLGLTGFALGFALRDTISNLLAGVLLLVYRPFDINHHIQVSGFEGTVINIDLRYTT-LESPTARILIPNSKLFTDPITV 165          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|401420892|ref|XP_003874935.1| (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >gi|322491171|emb|CBZ26436.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 88.1965 bits (217), Expect = 5.059e-17
Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 0
Query:  239 TGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGA----YTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKD-KAGRVIHSAGAHPGVTPTTPHPSPPPAAAAKSTPPPR 401
            TG + D       +R TA  +  + + ++LGTLG+DT P+IA  GV+G  +GFA K+   N ++ I L  QR  +TG K+ +G      +GTV+  D+RY+ L  EE A++ VP   V     +V+  KD      + S GA+          S    AAA +  PP+
Sbjct:   12 TGLIKDPGQRSIASRVTALAVEGVAVFTVLGTLGVDTSPLIAAAGVTGATIGFACKDFGANFVASIALSGQRALRTGNKVSIGVGVNIVSGTVVDWDTRYIYLRNEEKALVCVPNNVVLN---SVVMWKDPNTAAPLTSKGAYQA------KDSKEWNAAASAAEPPQ 170          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|910761202|gb|KNH08048.1| (hypothetical protein XU18_1378 [Perkinsela sp. CCAP 1560/4])

HSP 1 Score: 87.8113 bits (216), Expect = 6.070e-17
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 0
Query:  232 LETFLLRTGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQ--RPFKTGWKIRVG----AYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
               F  +T  + D  +   +++A+A    SMI+ + LGT G+DT PI+ GLGV G  +GFA ++I  N+++G++L F   R F  G K+R+G    +  G V S D R++ LL  E   + VP   VY+  ITV
Sbjct:   11 FNIFFTKTNLIPDSAVRDIVSKASATAAWSMILFTALGTAGIDTSPILTGLGVGGASLGFAARDIGANLMAGLMLAFNRHRAFGHGRKLRIGSGPSSIEGVVCSWDLRHLILLNSEMERVYVPNSMVYSSIITV 144          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|1200418492|gb|OUV35542.1| (mechanosensitive ion channel [Verrucomicrobia bacterium TMED102])

HSP 1 Score: 87.4261 bits (215), Expect = 6.298e-17
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 0
Query:  244 DRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITV 359
            D  +   +AR     I  + + + LGT+G+D   I+A LG++GF VGFALK+  +N+LSG+L++  RPF+ G  I V ++ G V  ID RY   L ++D  ILVP   ++T PI +
Sbjct:   38 DSSVVNLLARVANVGIWIVGLVTALGTVGIDVSAIVASLGLTGFAVGFALKDSISNLLSGVLILIYRPFRVGQSINVKSFEGKVTVIDLRYTT-LEQDDEKILVPNSLLFTNPINI 152          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|1072779946|ref|WP_069969809.1| (mechanosensitive ion channel [Desertifilum sp. IPPAS B-1220] >gi|1070568414|gb|OEJ72616.1| mechanosensitive ion channel [Desertifilum sp. IPPAS B-1220])

HSP 1 Score: 87.0409 bits (214), Expect = 1.385e-16
Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 0
Query:  268 LGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGAYTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKDK 365
            LGTLG+D   ++AGLG++GF +G ALK+I +N+LSG+L++  +PF+    I+VG   G VL ID RY   L  ++  IL+P   ++T  I +I++++K
Sbjct:   74 LGTLGIDVSALVAGLGLTGFALGLALKDIVSNLLSGVLILIYQPFRRNDWIKVGPTEGKVLQIDLRYTT-LQADNQKILIPNSSLFTNTICIIDKEEK 170          
BLAST of EWM27928.1 vs. NCBI_GenBank
Match: gi|146105002|ref|XP_001469960.1| (conserved hypothetical protein [Leishmania infantum JPCM5] >gi|398025106|ref|XP_003865714.1| hypothetical protein, conserved [Leishmania donovani] >gi|134074330|emb|CAM73077.1| conserved hypothetical protein [Leishmania infantum JPCM5] >gi|322503951|emb|CBZ39038.1| hypothetical protein, conserved [Leishmania donovani])

HSP 1 Score: 85.8853 bits (211), Expect = 2.726e-16
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0
Query:  239 TGAVHDRDLSRFIARATAFVIISMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFKTGWKIRVGA----YTGTVLSIDSRYVRLLTEEDAMILVPAYQVYTQPITVIERKD 364
            TG + D       +R TA  +  + + ++LGTLG+DT P+IA  GV+G  +GFA K+   N ++ I L  QR  +TG K+ +G      +GTV+  D+RY+ L  EE A++ VP   V     +V+  KD
Sbjct:   12 TGIIKDPGQRSIASRVTALAVEGVAVFTVLGTLGVDTSPLIAAAGVTGATIGFACKDFGANFVASIALSGQRALRTGNKVSIGVGPNIVSGTVVDWDTRYIYLRNEERAVVCVPNNVVLN---SVVMWKD 138          
The following BLAST results are available for this feature:
BLAST of EWM27928.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110269|gb|EWM27928.1|0.000e+0100.00mechanosensitive ion channel [Nannochloropsis gadi... [more]
gi|914960565|ref|XP_013236979.1|2.361e-2443.61hypothetical protein DI09_66p160 [Mitosporidium da... [more]
gi|528891118|gb|EPZ31600.1|2.119e-2342.02Alkaline-phosphatase-like domain-containing protei... [more]
gi|498164184|ref|WP_010478340.1|1.314e-1943.80mechanosensitive ion channel [Acaryochloris sp. CC... [more]
gi|985798923|dbj|BAU47770.1|1.438e-1843.64mechanosensitive ion channel MscS [Sulfurifustis v... [more]
gi|401420892|ref|XP_003874935.1|5.059e-1733.93conserved hypothetical protein [Leishmania mexican... [more]
gi|910761202|gb|KNH08048.1|6.070e-1737.31hypothetical protein XU18_1378 [Perkinsela sp. CCA... [more]
gi|1200418492|gb|OUV35542.1|6.298e-1740.52mechanosensitive ion channel [Verrucomicrobia bact... [more]
gi|1072779946|ref|WP_069969809.1|1.385e-1642.86mechanosensitive ion channel [Desertifilum sp. IPP... [more]
gi|146105002|ref|XP_001469960.1|2.726e-1636.92conserved hypothetical protein [Leishmania infantu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2648rna2648Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications