rna2645, rna2645 (mRNA) Nannochloropsis gaditana

Overview
Namerna2645
Unique Namerna2645
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1582
Alignment locationCM002459.1:872035..874584 -

Link to JBrowse

Properties
Property NameValue
ProductHyaluronan/mRNA-binding protein
Orig transcript idgnl|cribi|Naga_100008g9.7862.mrna
Orig protein idgnl|cribi|Naga_100008g9.7862
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:872035..874584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g9gene2529Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27970.1cds2637Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2645rna2645-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2645 ID=rna2645|Name=rna2645|organism=Nannochloropsis gaditana|type=mRNA|length=1582bp
CGAGAACGCCGCCAAGCGCCTGTAGAGATGAGTCGAAGGAATTTTCAGAT
CTCGTGCTATTCACAAAAAAAGACGCATCATATCCCCGTCACGCACAGGA
CCATTTCTGTGTCTTTTTTTTCTACAGCTGTCCTCTTGTGGAGACGCTTG
TCATCCTTTCCCCCGGTCACCTCGGCAACCTCTTACTCCCTGTCCGCAAG
AGGCGGGTTGCAGACGTCAGCATTTGCGCCCTCATCTTTTTTGCTTCATA
ATCCCGCTTTGGCAGGCACAAAGGGTAAATATCCAGCAAGCGCACGTGGT
GGTTGGACAATAATGCCGTCCAGCAAATCATCGTCATCGTCCTCATCGAA
GAAAGGTGCTGAAGCTGTCGCCAAGTCGATTCAAGACCCCAAGCCCGCCA
AGGAATCGACAGACTCGTCATCGAAAAATCAGAGGAAGTCATCTCGAAAA
CGAGATCCAGTGGATTATAACGAGGAACACGTCGTCGTGCAAGAAGAAGC
AGGAGCATCGGAGACTACCAAGAACAAGAAACCTCGCCGTGACACTCCAA
AAGTTTTCTCAGAACGTCAACAGGAACCTTCGCGAGACTCAAAAGGCGTG
CTCCACTTTAAGGACCACCCGGAATTTCTGCCGAATCTCACGCCGAAAGA
AGTGTTGCGTGCGGGAAGTTTTGGTGGAGGGTATTTTCGTCCCATACACA
GCTCAGTGACGGGAGAGGACTACTCGGACGCCCACAAGGAGTTCCCCAGC
GACTGGTTTGAAGGCTTGGACATGAAGCGCATGATTACGTCCAAAACCTA
CCGGCCCGACATCAACACGTACGGGGTCAAATGCGGTGGCTCTCTGGAGA
TGTGGGAGAGCAGCGGGTGGATTACACCCGTCGATCCGTACGGCGCCTTT
CAATGGTACTGCCGCTTTTTCCTTGGCCGGCGCTCGGAAGACGACGCCCG
GCAAATCGGTCGTTTTAACCAAGTAATGGGACCAACAGGGCGTTTTCGCA
CGAACCTAATGAATCAGATCGTCAGGAAGGGGAAACGCTTCGACGACGTG
AATGTCTCGCCTGTCATCCGGCAGACGCTACAGCACTGGGGGTACAGACT
CACCGAGGCAGACTTCAAAGCGTACTGCAAGAAAAAAGGCTTTGAGTGCC
CCACTTGAGAATGAATTGGCGAGAATGACAATAATCTTGCTGGATCGCCC
GTTCTTAGACGCAGACTGACGGCCTGTGTGAAACGGCGCGGTAGAATGGG
ACCAAGGAGTGACGACTGTCACCCAAGGTGGGACGCCGCGGTGTGCATTT
CGGGAAAGAGAGAAGAAGGTGGAGGTACGAATGCCAGTGGGTCATTTTAA
TGATTAAAGACTACCGGAGGCATACGCGCCACGCAGGGTGCTGGAAGTCG
CAAAGATTTGATTCTCCTTCCAATCATTGAAGGAGTCTTCGCTTAGAGCG
GCAAGGGAACACATGGGAAAGCTATGTACATACAAGACGTAGCGTTGTCA
TACCTTTATTTACTCAGATTAACAGATCGGTGGTTGGGTGCTCAACATAA
ATAAAAAAAATTAAGACATAGCCAACCTGACT
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protein sequence of rna2645

>rna2645-protein ID=rna2645-protein|Name=rna2645|organism=Nannochloropsis gaditana|type=polypeptide|length=270bp
MGVGGRCVRGGAGRQENGREAREPKQHARDEHRQHERRDGTGRGGRRQHR
NGTGKFNWGEEAVEPIEPLAEDEEREEGEGEGEGEGEGEDGKLRESGRKG
EGREESEPEPEPPTKSYSEYQAEMAEVKRKNAELFGTAKEREVDSSELSK
LTVVKREEEEEEEEGEEGAGRRKASAQRASGRQLLNASFRSGGDSGFRGE
RGGRGGRGGRGDGRRGEGERGGRGRGRGEGEPGRRGGRLGGEGRGTRGGR
GGRGGGARLNIDDKSMFPTL
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mRNA from alignment at CM002459.1:872035..874584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2645 ID=rna2645|Name=rna2645|organism=Nannochloropsis gaditana|type=mRNA|length=2550bp|location=Sequence derived from alignment at CM002459.1:872035..874584- (Nannochloropsis gaditana)
AAGCCACTTTCTGGCCTCCCCTAGCAGACACCCCCCCGCCGTCCATGGCG
TTTTCCGATGCATCTTCCTGTCATGAGATTGGCTTTAAGGGCAGCAGCAC
TCGTTTTTATGTTTTCCGTGTCAAGCATCAAAGTACGTGGGGTATCGCGT
GGTGCCTGCGTCCAATACGTTTCTCCCACCGTGCGCTGGCATGTGAAGAA
GCACACTGTCAACACGCATTGATATCATCTAGCCCTTATTCGATGCCTTC
GTCTCCATTTCTAACCAACTCTCAAAGGGGAGCCCGTCAACCTCTTACTC
TCATGTCAATTTGCTTTGCTCACGCTTCGCTCTCATCTGTCCAGAAGACG
TCGTGACACAGGCTGGGCCTACTCCATCGGTTCTGACCTCTCCTCCGCTG
AGGGTACGTGCAGGACATAACTCGGACAGGCAGACATCGAGCAGTGCCAC
ACCTTCTAAAGCATGGTAGGTAACAAAATGTCATCGGACTGTGCATTTGA
GAAGGAATTGATGCTGTCGATTGCACGCAAATGAAATGTCATTCTTCCCA
GCATGTTAGATGTTGGTGTGGCGTTCTGAATATGTTCACCGACATCGCAA
AATTGCGCTTTAAAGGCTGCTCATATGCACCTTTGCAGCTCCGAGCCGCC
CTGCATCCTCATTGGTGCATTAGGCGCCAAACATCTGAAACCAAGCCCTG
ACCACCATCAATCTCCTCACTTCCGTTTACTTCTTTCCTCGACCTCCCCC
CCAGTCGAATCGCTTCGCGCTCCTCGCGGACGGTGCGGACGACGACGAAG
GGTCCCCTCAGGCGCTCGAGACGGTGGCACCGGGGGCCACGGGGGCTGCC
AAGCGGGTAGAGACCGGCGCCCGCGGGAAAGCTGAGAAGAAGAGCCATGG
GAGTGGGCGGTCGGTGCGTGAGGGGGGGGGCAGGGAGGCAGGAGAATGGC
AGGGAAGCACGGGAACCGAAACAGCACGCGCGAGACGAACACCGCCAGCA
TGAACGACGGGATGGCACCGGTCGGGGCGGGCGTCGGCAGCACCGGAATG
GAACGGGAAAGTTCAACTGGGGAGAAGAGGCGGTGGAGCCGATAGAGCCC
CTCGCGGAGGACGAGGAAAGGGAGGAGGGAGAGGGAGAGGGCGAGGGAGA
GGGCGAGGGAGAGGATGGAAAATTGAGGGAGTCTGGGAGGAAAGGCGAAG
GGAGGGAGGAGAGCGAGCCCGAGCCGGAGCCTCCCACCAAGTCTTACTCG
GAGTACCAGGCCGAGATGGCGGAGGTGAAGCGGAAGAACGCCGAGCTGTT
CGGCACGGCCAAGGAGAGGGAGGTGGACAGCTCGGAGCTGTCGAAGCTCA
CGGTGGTGAAGCGGGAGGAGGAGGAGGAAGAAGAAGAGGGGGAGGAGGGC
GCGGGGCGGAGGAAGGCATCGGCGCAGAGGGCTTCGGGTCGCCAGCTTTT
GAACGCGAGCTTTCGGTCGGGGGGGGACTCCGGGTTTCGGGGGGAGCGCG
GAGGGCGGGGCGGGAGGGGTGGGCGCGGGGACGGACGACGAGGAGAAGGG
GAAAGGGGTGGGCGAGGCCGAGGCCGGGGGGAGGGAGAGCCAGGACGCAG
AGGAGGACGACTGGGCGGGGAAGGGAGGGGGACGAGGGGCGGGCGAGGGG
GGCGGGGGGGAGGGGCCAGGCTGAATATTGATGACAAGAGCATGTTTCCG
ACCCTATAGGGGAAGGCTAGAGGGGAGGGGATGGCAGGGGGAGGTCCTCT
TTGTGTAGGAAATCGCGATTTTAGCAGAGGGCTGCGGCCATCTGCGTAAG
GCGGGGTGGGAGGAAGATGTTAAAGCCTGCGCATGCAGTAATAGTAAGGA
GTGTTGTGTAGATCCCAGGATAAGTGAGGAACCAAAATGGCGGGAATTGC
TGGGCTCCAAATGCTCTGGCGGGTACGATGGGTCTAGTACACCGGTGTGT
CTCTGACCGGGGTGGCCTCTTGTCTTCCTCTGGTCCTAGTGGCGTGGAGT
CCGCTGTGAAATGGGATATAGGGTGCGAGAAGGGTGTGCTCATTAAAGAC
CTGGCATGATGGCGAAGAAACTTATGGAAGGGGGGCGAACAGGGGGCGGG
CGGCTCGAAGTGGAGAGGGAGGAGGGAAGAGCAGGCAAAGAGCAGCCATG
CATCGACCTGTGTCGAAAAGGTGAGGGCGACGCTTCTTAGAGCTATGTCG
CGCTCCTAATGAATATGGGATGTTAAAGGAGAAGGTAATACCAAATAATG
CGTACCGGTTAAAAGCGTGACCACATGTCTACAGCGGAGGAGAGTCACAA
TCCTAACTCCGACGTGATGTCGGGATATCGATGAAGTCGGTTGTGTGGGT
ACGGGGAAAGGAGACATGACTTTCCTGGAGGCCCGAATAGTCCAACAATA
AAGAATAAGCAAACAAATTACGCCAGGTCTCTGCTTTTGTAAGTCACCAT
ATATGCTCCATTCTCTGTTAAAATAAGTGCCTTCGGTTGGGGTGGTGGGG
GAAGCCACGCGTTTCCATTCGGAACGTGGACTGGCATCCGCAGTGTAGAT
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Coding sequence (CDS) from alignment at CM002459.1:872035..874584-

>rna2645 ID=rna2645|Name=rna2645|organism=Nannochloropsis gaditana|type=CDS|length=813bp|location=Sequence derived from alignment at CM002459.1:872035..874584- (Nannochloropsis gaditana)
ATGGGAGTGGGCGGTCGGTGCGTGAGGGGGGGGGCAGGGAGGCAGGAGAA
TGGCAGGGAAGCACGGGAACCGAAACAGCACGCGCGAGACGAACACCGCC
AGCATGAACGACGGGATGGCACCGGTCGGGGCGGGCGTCGGCAGCACCGG
AATGGAACGGGAAAGTTCAACTGGGGAGAAGAGGCGGTGGAGCCGATAGA
GCCCCTCGCGGAGGACGAGGAAAGGGAGGAGGGAGAGGGAGAGGGCGAGG
GAGAGGGCGAGGGAGAGGATGGAAAATTGAGGGAGTCTGGGAGGAAAGGC
GAAGGGAGGGAGGAGAGCGAGCCCGAGCCGGAGCCTCCCACCAAGTCTTA
CTCGGAGTACCAGGCCGAGATGGCGGAGGTGAAGCGGAAGAACGCCGAGC
TGTTCGGCACGGCCAAGGAGAGGGAGGTGGACAGCTCGGAGCTGTCGAAG
CTCACGGTGGTGAAGCGGGAGGAGGAGGAGGAAGAAGAAGAGGGGGAGGA
GGGCGCGGGGCGGAGGAAGGCATCGGCGCAGAGGGCTTCGGGTCGCCAGC
TTTTGAACGCGAGCTTTCGGTCGGGGGGGGACTCCGGGTTTCGGGGGGAG
CGCGGAGGGCGGGGCGGGAGGGGTGGGCGCGGGGACGGACGACGAGGAGA
AGGGGAAAGGGGTGGGCGAGGCCGAGGCCGGGGGGAGGGAGAGCCAGGAC
GCAGAGGAGGACGACTGGGCGGGGAAGGGAGGGGGACGAGGGGCGGGCGA
GGGGGGCGGGGGGGAGGGGCCAGGCTGAATATTGATGACAAGAGCATGTT
TCCGACCCTATAG
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Synonyms
Publications