rna2644, rna2644 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2644
Unique Name	rna2644
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	795
Alignment location	CM002459.1:869600..871535 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100008g8.7907.mrna
Orig protein id	gnl\|cribi\|Naga_100008g8.7907
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:869600..871535 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100008g8	gene2528	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2644	rna2644-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28015.1	cds2636	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:869600..871535-
coding sequence from alignment at CM002459.1:869600..871535-

mRNA sequence

>rna2644 ID=rna2644|Name=rna2644|organism=Nannochloropsis gaditana|type=mRNA|length=795bp
GCGTGACAACGTACGACCGTCGCAGAAGCACCACCAAATATTTTCCGAGA
ATTTGCGAACTTCAATGGTCATGAATATTAATTGCCCGATGATTTCTCCT
CGCATCCAATATTCATTTGGCGTCCTCGAACTCGCGAGCCGACGGGCGAG
GGAAAGTGGAAATTACGTAAACAAGGAAGAGGATTAAGCGATGGAGAAAC
GCGCTGCCCATCCAATGCTCCAATGTGACAAGCGGGCCTTGGCAAAGCTT
GCGGGGCTCGTAAGAAGAAATCGTGCCACCGCACGCAGACGTGTGTTGAG
TGTTACTATCCTCTCAAACTCACAGCACAATCCGTCCAAACCTCTGTTGG
TCAGAATGGCTTTCTTACGACAGGGCGCGCATTTTTTCACGGCCACCACC
AGGAGAACAAGGTGGTGTTCAGGGTTAGGCAAAAGCCTGCAGACACAGTG
CTTCAGTTCCAGCTTGAACCGTCTACCAGTGCCGAATCAGCCCAGTTCTC
TTTCGTACGGCCCGCTCTCGGCAATCTTATACCGATTGTTCCCAGGTCCC
CGTCTAATACCTTCAGACAGTTGGGTGGAGGAGTTCGATTGCCTGAATCG
CAATGCTAGGAGAGGAAAGAAGGCAAACCATGGGAAGAGGCCTGTGAGTT
CCGTGCGAAGAAAGCGGAAAACCCGCACCTTCGGGCGGAAAAGCGGGTAG
TTGGATGGGAGCAGGCCAGGCACACAGTAATGACTAGAACAAGGATTCAA
AATGATCAACATCAACTGCCGCGGAAAATAGTCAGGTTGGCTATG

protein sequence of rna2644

>rna2644-protein ID=rna2644-protein|Name=rna2644|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MSRRNFQISCYSQKKTHHIPVTHRTISVSFFSTAVLLWRRLSSFPPVTSA
TSYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSK
SSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEE
HVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEF
LPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMK
RMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLG
RRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQT
LQHWGYRLTEADFKAYCKKKGFECPT

mRNA from alignment at CM002459.1:869600..871535-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2644 ID=rna2644|Name=rna2644|organism=Nannochloropsis gaditana|type=mRNA|length=1936bp|location=Sequence derived from alignment at CM002459.1:869600..871535- (Nannochloropsis gaditana)
CGAGAACGCCGCCAAGCGCCTGTAGAGATGAGTCGAAGGAATTTTCAGAT
CTCGTGCTATTCACAAAAAAAGACGCATCATATCCCCGTCACGCACAGGA
CCATTTCTGTGTCTTTTTTTTCTACAGCTGTCCTCTTGTGGAGACGCTTG
TCATCCTTTCCCCCGGTCACCTCGGCAACCTCTTACTCCCTGTCCGCAAG
AGGCGGGTTGCAGACGTCAGCATTTGCGCCCTCATCTTTTTTGCTTCATA
ATCCCGCTTTGGCAGGCACAAAGGGTAAATATCCAGCAAGCGCACGTGGT
GGTTGGACAATAATGCCGTCCAGCAAATCATCGTCATCGTCCTCATCGAA
GAAAGGTGCTGAAGCTGTCGCCAAGTCGATTCAAGACCCCAAGCCCGCCA
AGGAATCGACAGACTCGTCATCGAAAAATCAGAGGAAGTCATCTCGAAAA
CGAGATCCAGTGGATTATAACGAGGAACACGTCGTCGTGCAAGAAGAAGC
AGGAGCATCGGAGACTACCAAGAACAAGAAACCTCGCCGTGACACTCCAA
AAGTTTTCTCAGAACGTCAACAGGAACCTTCGCGAGACTCAAAAGGCGTG
CTCCACTTTAAGGACCACCCGGAATTTCTGCCGAATCTCACGCCGAAAGA
AGTGTTGCGTGCGGGAAGTTTTGGTGGAGGGTATTTTCGTCCCATACACA
GCTCAGTGACGGGAGAGGACTACTCGGACGCCCACAAGGAGTTCCCCAGC
GACTGGTTTGAAGGCTTGGACATGAAGCGCATGATTACGTCCAAAACCTA
CCGGCCCGACATCAACACGTACGGGGTCAAATGCGGTGGCTCTCTGGAGA
TGTGGGAGAGCAGCGGGTGGATTACACCCGTCGATCCGTACGGCGCCTTT
CAATGGTAAGGCAGGGCCTGTTGCTCCCAGCATTTGTCATCCCGCCACAA
AGCTACCTCTCTTTGATAAACTTAAGGGGAGATAAGACTGTGTGAGTGGG
ACTTGTCGTGAGAGTCACCTGGCCTTTCCCCCTGCATTCGCTTAGGTACT
GCCGCTTTTTCCTTGGCCGGCGCTCGGAAGACGACGCCCGGCAAATCGGT
CGTTTTAACCAAGTAATGGGACCAACAGGGCGTTTTCGCACGAACCTAAT
GAATCAGATCGTCAGGAAGGGGAAACGCTTCGACGACGTGAATGTCTCGC
CTGTCATCCGGCAGACGCTACAGCACTGGGGGTACAGACTCACCGAGGTA
AATGCTGTGTCCACGGAGGCCACGCCAGATATTGATGTGCTCCAGTCAGC
CAGTAAGACTTACTTAAAGCTAATTGCTACTCGCAGAGGCACATTTTCCA
TGCCCATGCTATCCATTCCATGTCTTATCGGAGGCCCTGCACAAACCGCG
ATAACTCATCTCACAAATTGATTGGTCACCCTCCCATGGACGAATACACT
CCTTCTAACAGGCAGACTTCAAAGCGTACTGCAAGAAAAAAGGCTTTGAG
TGCCCCACTTGAGAATGAATTGGCGAGAATGACAATAATCTTGCTGGATC
GCCCGTTCTTAGACGCAGACTGACGGCCTGTGTGAAACGGCGCGGTAGAA
TGGGACCAAGGAGTGACGACTGTCACCCAAGGTGGGACGCCGCGGTGTGC
ATTTCGGGAAAGAGAGAAGAAGGTGGAGGTACGAATGCCAGTGGGTCATT
TTAATGATTAAAGACTACCGGAGGCATACGCGCCACGCAGGGTGCTGGAA
GTCGCAAAGATTTGATTCTCCTTCCAATCATTGAAGGAGTCTTCGCTTAG
AGCGGCAAGGGAACACATGGGAAAGCTATGTACATACAAGACGTAGCGTT
GTCATACCTTTATTTACTCAGATTAACAGATCGGTGGTTGGGTGCTCAAC
ATAAATAAAAAAAATTAAGACATAGCCAACCTGACT

Coding sequence (CDS) from alignment at CM002459.1:869600..871535-

>rna2644 ID=rna2644|Name=rna2644|organism=Nannochloropsis gaditana|type=CDS|length=3393bp|location=Sequence derived from alignment at CM002459.1:869600..871535- (Nannochloropsis gaditana)
GCAGACTTCAAAGCGTACTGCAAGAAAAAAGGCTTTGAGTGCCCCACTTG
AGTACTGCCGCTTTTTCCTTGGCCGGCGCTCGGAAGACGACGCCCGGCAA
ATCGGTCGTTTTAACCAAGTAATGGGACCAACAGGGCGTTTTCGCACGAA
CCTAATGAATCAGATCGTCAGGAAGGGGAAACGCTTCGACGACGTGAATG
TCTCGCCTGTCATCCGGCAGACGCTACAGCACTGGGGGTACAGACTCACC
GAGATGAGTCGAAGGAATTTTCAGATCTCGTGCTATTCACAAAAAAAGAC
GCATCATATCCCCGTCACGCACAGGACCATTTCTGTGTCTTTTTTTTCTA
CAGCTGTCCTCTTGTGGAGACGCTTGTCATCCTTTCCCCCGGTCACCTCG
GCAACCTCTTACTCCCTGTCCGCAAGAGGCGGGTTGCAGACGTCAGCATT
TGCGCCCTCATCTTTTTTGCTTCATAATCCCGCTTTGGCAGGCACAAAGG
GTAAATATCCAGCAAGCGCACGTGGTGGTTGGACAATAATGCCGTCCAGC
AAATCATCGTCATCGTCCTCATCGAAGAAAGGTGCTGAAGCTGTCGCCAA
GTCGATTCAAGACCCCAAGCCCGCCAAGGAATCGACAGACTCGTCATCGA
AAAATCAGAGGAAGTCATCTCGAAAACGAGATCCAGTGGATTATAACGAG
GAACACGTCGTCGTGCAAGAAGAAGCAGGAGCATCGGAGACTACCAAGAA
CAAGAAACCTCGCCGTGACACTCCAAAAGTTTTCTCAGAACGTCAACAGG
AACCTTCGCGAGACTCAAAAGGCGTGCTCCACTTTAAGGACCACCCGGAA
TTTCTGCCGAATCTCACGCCGAAAGAAGTGTTGCGTGCGGGAAGTTTTGG
TGGAGGGTATTTTCGTCCCATACACAGCTCAGTGACGGGAGAGGACTACT
CGGACGCCCACAAGGAGTTCCCCAGCGACTGGTTTGAAGGCTTGGACATG
AAGCGCATGATTACGTCCAAAACCTACCGGCCCGACATCAACACGTACGG
GGTCAAATGCGGTGGCTCTCTGGAGATGTGGGAGAGCAGCGGGTGGATTA
CACCCGTCGATCCGTACGGCGCCTTTCAATGGCAGACTTCAAAGCGTACT
GCAAGAAAAAAGGCTTTGAGTGCCCCACTTGAGTACTGCCGCTTTTTCCT
TGGCCGGCGCTCGGAAGACGACGCCCGGCAAATCGGTCGTTTTAACCAAG
TAATGGGACCAACAGGGCGTTTTCGCACGAACCTAATGAATCAGATCGTC
AGGAAGGGGAAACGCTTCGACGACGTGAATGTCTCGCCTGTCATCCGGCA
GACGCTACAGCACTGGGGGTACAGACTCACCGAGATGAGTCGAAGGAATT
TTCAGATCTCGTGCTATTCACAAAAAAAGACGCATCATATCCCCGTCACG
CACAGGACCATTTCTGTGTCTTTTTTTTCTACAGCTGTCCTCTTGTGGAG
ACGCTTGTCATCCTTTCCCCCGGTCACCTCGGCAACCTCTTACTCCCTGT
CCGCAAGAGGCGGGTTGCAGACGTCAGCATTTGCGCCCTCATCTTTTTTG
CTTCATAATCCCGCTTTGGCAGGCACAAAGGGTAAATATCCAGCAAGCGC
ACGTGGTGGTTGGACAATAATGCCGTCCAGCAAATCATCGTCATCGTCCT
CATCGAAGAAAGGTGCTGAAGCTGTCGCCAAGTCGATTCAAGACCCCAAG
CCCGCCAAGGAATCGACAGACTCGTCATCGAAAAATCAGAGGAAGTCATC
TCGAAAACGAGATCCAGTGGATTATAACGAGGAACACGTCGTCGTGCAAG
AAGAAGCAGGAGCATCGGAGACTACCAAGAACAAGAAACCTCGCCGTGAC
ACTCCAAAAGTTTTCTCAGAACGTCAACAGGAACCTTCGCGAGACTCAAA
AGGCGTGCTCCACTTTAAGGACCACCCGGAATTTCTGCCGAATCTCACGC
CGAAAGAAGTGTTGCGTGCGGGAAGTTTTGGTGGAGGGTATTTTCGTCCC
ATACACAGCTCAGTGACGGGAGAGGACTACTCGGACGCCCACAAGGAGTT
CCCCAGCGACTGGTTTGAAGGCTTGGACATGAAGCGCATGATTACGTCCA
AAACCTACCGGCCCGACATCAACACGTACGGGGTCAAATGCGGTGGCTCT
CTGGAGATGTGGGAGAGCAGCGGGTGGATTACACCCGTCGATCCGTACGG
CGCCTTTCAATGGCAGACTTCAAAGCGTACTGCAAGAAAAAAGGCTTTGA
GTGCCCCACTTGAGTACTGCCGCTTTTTCCTTGGCCGGCGCTCGGAAGAC
GACGCCCGGCAAATCGGTCGTTTTAACCAAGTAATGGGACCAACAGGGCG
TTTTCGCACGAACCTAATGAATCAGATCGTCAGGAAGGGGAAACGCTTCG
ACGACGTGAATGTCTCGCCTGTCATCCGGCAGACGCTACAGCACTGGGGG
TACAGACTCACCGAGATGAGTCGAAGGAATTTTCAGATCTCGTGCTATTC
ACAAAAAAAGACGCATCATATCCCCGTCACGCACAGGACCATTTCTGTGT
CTTTTTTTTCTACAGCTGTCCTCTTGTGGAGACGCTTGTCATCCTTTCCC
CCGGTCACCTCGGCAACCTCTTACTCCCTGTCCGCAAGAGGCGGGTTGCA
GACGTCAGCATTTGCGCCCTCATCTTTTTTGCTTCATAATCCCGCTTTGG
CAGGCACAAAGGGTAAATATCCAGCAAGCGCACGTGGTGGTTGGACAATA
ATGCCGTCCAGCAAATCATCGTCATCGTCCTCATCGAAGAAAGGTGCTGA
AGCTGTCGCCAAGTCGATTCAAGACCCCAAGCCCGCCAAGGAATCGACAG
ACTCGTCATCGAAAAATCAGAGGAAGTCATCTCGAAAACGAGATCCAGTG
GATTATAACGAGGAACACGTCGTCGTGCAAGAAGAAGCAGGAGCATCGGA
GACTACCAAGAACAAGAAACCTCGCCGTGACACTCCAAAAGTTTTCTCAG
AACGTCAACAGGAACCTTCGCGAGACTCAAAAGGCGTGCTCCACTTTAAG
GACCACCCGGAATTTCTGCCGAATCTCACGCCGAAAGAAGTGTTGCGTGC
GGGAAGTTTTGGTGGAGGGTATTTTCGTCCCATACACAGCTCAGTGACGG
GAGAGGACTACTCGGACGCCCACAAGGAGTTCCCCAGCGACTGGTTTGAA
GGCTTGGACATGAAGCGCATGATTACGTCCAAAACCTACCGGCCCGACAT
CAACACGTACGGGGTCAAATGCGGTGGCTCTCTGGAGATGTGGGAGAGCA
GCGGGTGGATTACACCCGTCGATCCGTACGGCGCCTTTCAATG

Synonyms

Publications