EWM28015.1, cds2636 (CDS) Nannochloropsis gaditana

Overview
NameEWM28015.1
Unique Namecds2636
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:870631..871508 -
Alignment locationCM002459.1:870289..870490 -
Alignment locationCM002459.1:870024..870074 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28015.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g8.7907.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:870631..871508 -
CM002459.1supercontigCM002459.1:870289..870490 -
CM002459.1supercontigCM002459.1:870024..870074 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|585110356|gb|EWM28015.1| (hypothetical protein Naga_100008g8 [Nannochloropsis gaditana])

HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0
Query:    1 MSRRNFQISCYSQKKTHHIPVTHRTISVSFFSTAVLLWRRLSSFPPVTSATSYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKKKGFECPT 376
            MSRRNFQISCYSQKKTHHIPVTHRTISVSFFSTAVLLWRRLSSFPPVTSATSYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKKKGFECPT
Sbjct:    1 MSRRNFQISCYSQKKTHHIPVTHRTISVSFFSTAVLLWRRLSSFPPVTSATSYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKKKGFECPT 376          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|553181952|ref|XP_005853652.1| (hypothetical protein NGA_0037902, partial [Nannochloropsis gaditana CCMP526] >gi|422295411|gb|EKU22710.1| hypothetical protein NGA_0037902, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0
Query:   24 RTISVSFFSTAVLLWRRLSSFPPVTSATSYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQW 293
            RTISVSFFSTAVLLWRRLSSFPPVTSAT YSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQW
Sbjct:    1 RTISVSFFSTAVLLWRRLSSFPPVTSATFYSLSARGGLQTSAFAPSSFLLHNPALAGTKGKYPASARGGWTIMPSSKSSSSSSSKKGAEAVAKSIQDPKPAKESTDSSSKNQRKSSRKRDPVDYNEEHVVVQEEAGASETTKNKKPRRDTPKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQW 270          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|873240672|emb|CEL93163.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 280.796 bits (717), Expect = 4.252e-90
Identity = 129/198 (65.15%), Postives = 152/198 (76.77%), Query Frame = 0
Query:  175 KVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYS--DAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKKK 370
            ++++ER   P R   G L F+D+P+F PNLTP EVL+ GSFGG YFR I+SSVTG+ Y       EFP +WFEG++  RM+TS+TYR ++N Y VKCG SL+ WESSGWI   DPYGAFQWYCRF+LGRRS DD RQI RF  VMGPTGRFR+ L  QI R+G R+DDV VSPVIRQTLQHWGY LTEAD+KAYCK K
Sbjct:   57 EIYAERAPVPKRRPDGTLVFEDYPDFKPNLTPAEVLQRGSFGGTYFRSIYSSVTGKTYDPKQVLAEFPQEWFEGMNRGRMLTSQTYREEVNKYDVKCGQSLDQWESSGWIKKQDPYGAFQWYCRFYLGRRSSDDKRQISRFKGVMGPTGRFRSQLCGQINRRGTRYDDVQVSPVIRQTLQHWGYVLTEADYKAYCKAK 254          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|597788236|ref|XP_007257540.1| (PREDICTED: uncharacterized protein LOC103046511 isoform X2 [Astyanax mexicanus])

HSP 1 Score: 278.1 bits (710), Expect = 5.318e-89
Identity = 119/187 (63.64%), Postives = 148/187 (79.14%), Query Frame = 0
Query:  183 EPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            E  R+ KG L F+DHPEF PN++PKEVL+AGSFGG YFRPI+SS+T + Y D HKE P DW +GLD+ + ++S  YR ++NT+ VKCGGSLEMWESSGWI P DPYG FQWYCRF+ GRR+EDDARQI R+ +  G  GR+R NL+ ++VR G+RF D +VSPV+RQTLQHWGYRLTE D+K   K+
Sbjct:   76 EVKRNKKGQLVFEDHPEFCPNMSPKEVLQAGSFGGTYFRPIYSSITKQHYKDVHKELPQDWLQGLDIHKQVSSAVYREEVNTFKVKCGGSLEMWESSGWIKPQDPYGWFQWYCRFYQGRRTEDDARQISRWAKCAGVKGRWRNNLITKVVRAGRRFADHSVSPVVRQTLQHWGYRLTEEDYKEGAKR 262          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|597788234|ref|XP_007257539.1| (PREDICTED: uncharacterized protein LOC103046511 isoform X1 [Astyanax mexicanus])

HSP 1 Score: 278.485 bits (711), Expect = 7.014e-89
Identity = 119/187 (63.64%), Postives = 148/187 (79.14%), Query Frame = 0
Query:  183 EPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            E  R+ KG L F+DHPEF PN++PKEVL+AGSFGG YFRPI+SS+T + Y D HKE P DW +GLD+ + ++S  YR ++NT+ VKCGGSLEMWESSGWI P DPYG FQWYCRF+ GRR+EDDARQI R+ +  G  GR+R NL+ ++VR G+RF D +VSPV+RQTLQHWGYRLTE D+K   K+
Sbjct:   87 EVKRNKKGQLVFEDHPEFCPNMSPKEVLQAGSFGGTYFRPIYSSITKQHYKDVHKELPQDWLQGLDIHKQVSSAVYREEVNTFKVKCGGSLEMWESSGWIKPQDPYGWFQWYCRFYQGRRTEDDARQISRWAKCAGVKGRWRNNLITKVVRAGRRFADHSVSPVVRQTLQHWGYRLTEEDYKEGAKR 273          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|1191071113|ref|XP_020914241.1| (uncharacterized protein LOC110251832 [Exaiptasia pallida] >gi|999983597|gb|KXJ22738.1| hypothetical protein AC249_AIPGENE26038 [Exaiptasia pallida])

HSP 1 Score: 274.248 bits (700), Expect = 2.284e-87
Identity = 124/196 (63.27%), Postives = 149/196 (76.02%), Query Frame = 0
Query:  174 PKVFSERQQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            PKV   +QQE  RD  G + F D+P+F PNLTPKEVL+AGSFGG YFRPI SS+TGE Y+   KEFPSDWF+GL + R + S  Y  D+NTY VKCGGSLEMWESSGWI   DPYG FQWYCRFFLGRRS+DD+RQ+GR+ +  G  GR+R NL+ ++VR G  +D+  VSPV+RQTLQHW YRLT+ D+  Y KK
Sbjct:   70 PKV--PKQQEIKRDKHGKIIFADYPDFKPNLTPKEVLQAGSFGGTYFRPIKSSITGEKYAAVWKEFPSDWFDGLSIPRQVVSSVYHTDVNTYKVKCGGSLEMWESSGWIVKQDPYGWFQWYCRFFLGRRSDDDSRQVGRWLRCAGDKGRWRNNLITKVVRSGCGYDNAGVSPVVRQTLQHWAYRLTKEDYDKYAKK 263          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|1049273987|ref|XP_017577372.1| (PREDICTED: uncharacterized protein LOC108442045 [Pygocentrus nattereri])

HSP 1 Score: 273.863 bits (699), Expect = 6.300e-87
Identity = 117/187 (62.57%), Postives = 146/187 (78.07%), Query Frame = 0
Query:  183 EPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            E  R+ KG L F+DHPEF PN++PKEVL+AGSFGG YFRPI+SS+T + Y D  KE P DW +GL++ + ++S TY  ++NTY VKCGGSLEMWESSGWI P DPYG FQWYCRF+ GRR+EDD RQI R+    G  GR+R NL+ ++VR G+RFDD +VSPV+RQTLQHWGYRLTE D++   K+
Sbjct:   99 EVKRNKKGQLVFEDHPEFQPNMSPKEVLQAGSFGGTYFRPIYSSITKQHYKDLWKELPQDWLQGLNVPKQVSSATYNEEVNTYKVKCGGSLEMWESSGWIKPQDPYGWFQWYCRFYEGRRTEDDVRQISRWANCAGVKGRWRNNLITKVVRSGQRFDDRSVSPVVRQTLQHWGYRLTEEDYREGAKR 285          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|1005423672|ref|XP_015772703.1| (PREDICTED: uncharacterized protein LOC107350951 [Acropora digitifera])

HSP 1 Score: 269.24 bits (687), Expect = 6.374e-86
Identity = 120/187 (64.17%), Postives = 147/187 (78.61%), Query Frame = 0
Query:  184 PSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYS-DAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            P RD  G L F D P+F PN+TPKEVL+AGSFGG YFRPI+SS+TG+ YS D +KEFP+DWF+GL++K  +TS  YR ++NTY VKCGGSLEMWESSGWI   DPYG F WYCRFFLGRR+EDD+RQ+ R+ +  G  GR+R NL+ ++VR G  +D+  VSPV+RQTLQHWGYRLT+ DF  Y KK
Sbjct:   49 PKRDKHGKLVFTDFPDFKPNMTPKEVLQAGSFGGTYFRPIYSSITGKKYSADVYKEFPADWFQGLNIKTQVTSSVYRNEVNTYKVKCGGSLEMWESSGWIHKQDPYGWFHWYCRFFLGRRTEDDSRQVDRWKKCAGDKGRWRNNLITKVVRSGCAYDNFGVSPVVRQTLQHWGYRLTKKDFDTYAKK 235          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|62955751|ref|NP_001017892.1| (uncharacterized protein LOC550591 [Danio rerio] >gi|62204714|gb|AAH93435.1| Zgc:113208 [Danio rerio])

HSP 1 Score: 269.626 bits (688), Expect = 2.076e-85
Identity = 117/189 (61.90%), Postives = 146/189 (77.25%), Query Frame = 0
Query:  181 QQEPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            +++  R+ KG L FKDHPEF PN+TPKEVL+AGSFGG YFRPI+SS+T + Y D  KE P DW +GL++   + S TYR  +NTY VKCGGSLEMWESSGWI P DPYG FQWYCRF+ GRR+EDDARQI R+++  G  GR+R NL+ ++VR G  +D+V VSPV+RQTLQHWGY+LT  D+K   K+
Sbjct:   93 KKQIKRNEKGQLLFKDHPEFTPNMTPKEVLQAGSFGGTYFRPIYSSITKKHYKDVWKELPEDWLDGLNIPEQVASSTYREKVNTYKVKCGGSLEMWESSGWIVPQDPYGWFQWYCRFYQGRRTEDDARQISRWSKCAGVKGRWRNNLITKVVRSGCAYDNVTVSPVVRQTLQHWGYKLTPEDYKQGAKR 281          
BLAST of EWM28015.1 vs. NCBI_GenBank
Match: gi|1101657533|ref|XP_018953539.1| (PREDICTED: uncharacterized protein LOC109083162 [Cyprinus carpio])

HSP 1 Score: 267.314 bits (682), Expect = 2.352e-84
Identity = 116/187 (62.03%), Postives = 144/187 (77.01%), Query Frame = 0
Query:  183 EPSRDSKGVLHFKDHPEFLPNLTPKEVLRAGSFGGGYFRPIHSSVTGEDYSDAHKEFPSDWFEGLDMKRMITSKTYRPDINTYGVKCGGSLEMWESSGWITPVDPYGAFQWYCRFFLGRRSEDDARQIGRFNQVMGPTGRFRTNLMNQIVRKGKRFDDVNVSPVIRQTLQHWGYRLTEADFKAYCKK 369
            E  R+ KG L FKDHPEF PNLTPKEVL+AGSFGG YFRPI+SS+T + Y D  +E P DW +GL++ + + S TYR ++N Y VKCGGSLEMWESSGWI P DPYG FQWYCRF+ GRR+EDDARQI R+ +  G  GR+R NL+ ++VR G  +D+ +VSPV+RQTLQHWGY+LT  D+K   K+
Sbjct:  107 EIKRNEKGQLVFKDHPEFTPNLTPKEVLQAGSFGGTYFRPIYSSITKQHYKDVWQELPEDWLDGLNISKQVASSTYRENVNIYNVKCGGSLEMWESSGWIVPQDPYGWFQWYCRFYHGRRTEDDARQISRWAKCAGVKGRWRQNLITKVVRSGCAYDNPSVSPVVRQTLQHWGYKLTLEDYKEGAKR 293          
The following BLAST results are available for this feature:
BLAST of EWM28015.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110356|gb|EWM28015.1|0.000e+0100.00hypothetical protein Naga_100008g8 [Nannochloropsi... [more]
gi|553181952|ref|XP_005853652.1|0.000e+099.63hypothetical protein NGA_0037902, partial [Nannoch... [more]
gi|873240672|emb|CEL93163.1|4.252e-9065.15unnamed protein product [Vitrella brassicaformis C... [more]
gi|597788236|ref|XP_007257540.1|5.318e-8963.64PREDICTED: uncharacterized protein LOC103046511 is... [more]
gi|597788234|ref|XP_007257539.1|7.014e-8963.64PREDICTED: uncharacterized protein LOC103046511 is... [more]
gi|1191071113|ref|XP_020914241.1|2.284e-8763.27uncharacterized protein LOC110251832 [Exaiptasia p... [more]
gi|1049273987|ref|XP_017577372.1|6.300e-8762.57PREDICTED: uncharacterized protein LOC108442045 [P... [more]
gi|1005423672|ref|XP_015772703.1|6.374e-8664.17PREDICTED: uncharacterized protein LOC107350951 [A... [more]
gi|62955751|ref|NP_001017892.1|2.076e-8561.90uncharacterized protein LOC550591 [Danio rerio] >g... [more]
gi|1101657533|ref|XP_018953539.1|2.352e-8462.03PREDICTED: uncharacterized protein LOC109083162 [C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2644rna2644Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications