rna2643, rna2643 (mRNA) Nannochloropsis gaditana

Overview
Namerna2643
Unique Namerna2643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length931
Alignment locationCM002459.1:868501..869615 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g7.7836.mrna
Orig protein idgnl|cribi|Naga_100008g7.7836
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:868501..869615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g7gene2527Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2643rna2643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27944.1cds2635Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2643 ID=rna2643|Name=rna2643|organism=Nannochloropsis gaditana|type=mRNA|length=931bp
CATGTCAGTCGACGAGCTGGGCGTTTGTGGGGAGGACGATGAGCATGTTG
ACCCATTCTCTTGGTAATCTGCAAATGCCATCAACCAAGAGCAAGGGCCG
GTATCAATTGACGCTGGAGCAGAAAGAAGAATTCACGACCAGTTTTCAAC
TATTCGACACGGATGGTAAAGGAGCAATTGATCTACATGAGCTCAAGGTA
CTCATGCGGGCTCTGGGCTTCAACATTCCCAAACGGGAGGTAGTGGCCCT
GGTCCGAGAGATCGACCCGACGAACCATGGCATGGTATCGTTTGATACCT
ATCTGGAAGTCATGACCGACATGGCCTCGCGCCGCGATCCGCTCGAGGAG
ATGAAAAAGGCCTTCCTGCTCTTTGCCGGCGACAAGGACGTTATCAGCGT
GCAAGACCTGAGGAGGGTGTCCAAACAATTGGGGGAGAAGATGTCGGAAG
ATGAGCTGGCAGCCATGGTTGCCGAATTCGACAGGGACGGGGATGGCTGC
ATCAACGAAGAGGAATTCTTGCAGATCATGAAAGGGAGTGGGACATTCTA
AGCTGCGAGGTGTGGAGGCGAGAGTCCTTCCACACGGATTATGCAGGTGG
ATGGCAAAAGTACGCTTCGATGCCAAGGTGAAAGCCTCGACGTTTGTCAG
TATTCGCTGGACTACATATACATGGCGGGGAGGCAGAATTTATCTTTTCC
TAGGGTGCCGAAAGAAAGCTGGGTGGGAGAGGTTTGGGTTTGGTTGTAAA
GAAGAGAGGAGCGGTGAGTGTCCGGGCGCCGGGCCGAGACCTTCTCATTT
CAAAGTATATTATTAGAGCACGCTGGTCCAGCGCTGAACGGATTCGGGGT
GCAATAACACGTTTCGGTAGTCAATAGTGTCGGTCAGGAGACTGAACAGC
ACAGGGGCTCCGAAACAATAACCGCCTCATT
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protein sequence of rna2643

>rna2643-protein ID=rna2643-protein|Name=rna2643|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MEKRAAHPMLQCDKRALAKLAGLVRRNRATARRRVLSVTILSNSQHNPSK
PLLVRMAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFSSSLNRLPVPNQ
PSSLSYGPLSAILYRLFPGPRLIPSDSWVEEFDCLNRNARRGKKANHGKR
PVSSVRRKRKTRTFGRKSG
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mRNA from alignment at CM002459.1:868501..869615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2643 ID=rna2643|Name=rna2643|organism=Nannochloropsis gaditana|type=mRNA|length=1115bp|location=Sequence derived from alignment at CM002459.1:868501..869615+ (Nannochloropsis gaditana)
GCGTGACAACGTACGACCGTCGCAGAAGCACCACCAAATATTTTCCGAGA
ATTTGCGAACTTCAATGGTCATGAATATTAATTGCCCGATGATTTCTCCT
CGCATCCAATATTCATTTGGCGTCCTCGAACTCGCGAGCCgacgggcgag
ggaaagtggAAATTACGTaaacaaggaagaggattaAGCGATGGAGAAAC
GCGCTGCCCATCCAATGCTCCAATGTGACAAGCGGGCCTTGGCAAAGCTT
GCGGGGCTCGTAAGAAGAAATCGTGCCACCGCACGCAGACGTGTGTTGAG
TGTTACTATCCTCTCAAACTCACAGCACAATCCGTCCAAACCTCTGTTGG
TCAGAATGGCTTTCTTACGACAGGGCGCGCATTTTTTCACGGCCACCACC
AGGAGAACAAGGTGGTGTTCAGGGTTAGGCAAAAGCCTGCAGACACAGTG
CTTCAGGTATGCAGGGGCAAATTGGAGGCCAAAAATTAGGCTTGTCCAGT
GACGGGCCGAGGACATTTCGTAACTGGTGTCGATGTGCCAAAAAGCTGCA
CGAATCATGTTTCACTCGTAGAAACCTGTGACTTCGTGCGATAACGTGGA
GGCTTGGTACCTGTTTATCGCCCAGGGTGTATTGTTTTGTCAAATTTTCT
CTCTCAGGTGTCATAATACCGAGGAAAGTGTGGCACCATGGATACTCTTT
GTCATTTTGGGAATATTTCTATATCTTCATGGACACATGTCATAGACTCA
GTCTCCATGTACTCTCACATCCATAGTTCCAGCTTGAACCGTCTACCAGT
GCCGAATCAGCCCAGTTCTCTTTCGTACGGCCCGCTCTCGGCAATCTTAT
ACCGATTGTTCCCAGGTCCCCGTCTAATACCTTCAGACAGTTGGGTGGAG
GAGTTCGATTGCCTGAATCGCAATGctaggagaggaaagaaggcaaaCCA
TGGGAAGAGGCCTGTGAGTTCCGTGCGAAGAAAGCGGAAAACCCGCACCT
TCGGGCGGAAAAGCGGGTAGTTGGATGGGAGCAGGCCAGGCACACAGTAA
TGACTAGAACAAGGATTCAAAATGATCAACATCAACTGCCGCGGAAAATA
GTCAGGTTGGCTATG
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Coding sequence (CDS) from alignment at CM002459.1:868501..869615+

>rna2643 ID=rna2643|Name=rna2643|organism=Nannochloropsis gaditana|type=CDS|length=1020bp|location=Sequence derived from alignment at CM002459.1:868501..869615+ (Nannochloropsis gaditana)
ATGGAGAAACGCGCTGCCCATCCAATGCTCCAATGTGACAAGCGGGCCTT
GGCAAAGCTTGCGGGGCTCGTAAGAAGAAATCGTGCCACCGCACGCAGAC
GTGTGTTGAGTGTTACTATCCTCTCAAACTCACAGCACAATCCGTCCAAA
CCTCTGTTGGTCAGAATGGCTTTCTTACGACAGGGCGCGCATTTTTTCAC
GGCCACCACCAGGAGAACAAGGTGGTGTTCAGGGTTAGGCAAAAGCCTGC
AGACACAGTGCTTCAGTTCCAGCTTGAACCGTCTACCAGTGCCGAATCAG
CCCAGTTCTCTTTCGTACGGCCCGCTCTCGGCAATCTTATACCGATTGTT
CCCAGGTCCCCGTCTAATACCTTCAGACAGTTGGGTGGAGGAGTTCGATT
GCCTGAATCGCAATGctaggagaggaaagaaggcaaaCCATGGGAAGAGG
CCTGTGAGTTCCGTGCGAAGAAAGCGGAAAACCCGCACCTTCGGGCGGAA
AAGCGGGTAGATGGAGAAACGCGCTGCCCATCCAATGCTCCAATGTGACA
AGCGGGCCTTGGCAAAGCTTGCGGGGCTCGTAAGAAGAAATCGTGCCACC
GCACGCAGACGTGTGTTGAGTGTTACTATCCTCTCAAACTCACAGCACAA
TCCGTCCAAACCTCTGTTGGTCAGAATGGCTTTCTTACGACAGGGCGCGC
ATTTTTTCACGGCCACCACCAGGAGAACAAGGTGGTGTTCAGGGTTAGGC
AAAAGCCTGCAGACACAGTGCTTCAGTTCCAGCTTGAACCGTCTACCAGT
GCCGAATCAGCCCAGTTCTCTTTCGTACGGCCCGCTCTCGGCAATCTTAT
ACCGATTGTTCCCAGGTCCCCGTCTAATACCTTCAGACAGTTGGGTGGAG
GAGTTCGATTGCCTGAATCGCAATGctaggagaggaaagaaggcaaaCCA
TGGGAAGAGGCCTGTGAGTTCCGTGCGAAGAAAGCGGAAAACCCGCACCT
TCGGGCGGAAAAGCGGGTAG
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Synonyms
Publications