EWM27944.1, cds2635 (CDS) Nannochloropsis gaditana

Overview
NameEWM27944.1
Unique Namecds2635
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:868691..868956 +
Alignment locationCM002459.1:869277..869520 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27944.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100008g7.7836.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:868691..868956 +
CM002459.1supercontigCM002459.1:869277..869520 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27944.1 vs. NCBI_GenBank
Match: gi|585110285|gb|EWM27944.1| (hypothetical protein Naga_100008g7 [Nannochloropsis gaditana])

HSP 1 Score: 342.813 bits (878), Expect = 2.455e-119
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MEKRAAHPMLQCDKRALAKLAGLVRRNRATARRRVLSVTILSNSQHNPSKPLLVRMAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFSSSLNRLPVPNQPSSLSYGPLSAILYRLFPGPRLIPSDSWVEEFDCLNRNARRGKKANHGKRPVSSVRRKRKTRTFGRKSG 169
            MEKRAAHPMLQCDKRALAKLAGLVRRNRATARRRVLSVTILSNSQHNPSKPLLVRMAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFSSSLNRLPVPNQPSSLSYGPLSAILYRLFPGPRLIPSDSWVEEFDCLNRNARRGKKANHGKRPVSSVRRKRKTRTFGRKSG
Sbjct:    1 MEKRAAHPMLQCDKRALAKLAGLVRRNRATARRRVLSVTILSNSQHNPSKPLLVRMAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFSSSLNRLPVPNQPSSLSYGPLSAILYRLFPGPRLIPSDSWVEEFDCLNRNARRGKKANHGKRPVSSVRRKRKTRTFGRKSG 169
[Close]
BLAST of EWM27944.1 vs. NCBI_GenBank
Match: gi|553181955|ref|XP_005853653.1| (hypothetical protein NGA_0039002, partial [Nannochloropsis gaditana CCMP526] >gi|422295412|gb|EKU22711.1| hypothetical protein NGA_0039002, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.1738 bits (178), Expect = 1.478e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:   56 MAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFSS 90
            MAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCF S
Sbjct:    1 MAFLRQGAHFFTATTRRTRWCSGLGKSLQTQCFRS 35
The following BLAST results are available for this feature:
BLAST of EWM27944.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110285|gb|EWM27944.1|2.455e-119100.00hypothetical protein Naga_100008g7 [Nannochloropsi... [more]
gi|553181955|ref|XP_005853653.1|1.478e-1497.14hypothetical protein NGA_0039002, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2643rna2643Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications