rna2639, rna2639 (mRNA) Nannochloropsis gaditana

Overview
Namerna2639
Unique Namerna2639
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length546
Alignment locationCM002459.1:861763..864070 +

Link to JBrowse

Properties
Property NameValue
Productdihydrolipoamide s-acetyltransferase (e2 component of pyruvate dehydrogenase complex)
Orig transcript idgnl|cribi|Naga_100008g2.7890.mrna
Orig protein idgnl|cribi|Naga_100008g2.7890
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:861763..864070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100008g2gene2523Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2639rna2639-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27998.1cds2631Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2639 ID=rna2639|Name=rna2639|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
ATGATCGTGCCGCTAGGGGAGGAGAGGAAGAAGTTGCACGCATGGTTGCA
GCAACAACTTCGGCCCTTGAGCGAAACGAGTCCCGCTATTCTCAGTAAAT
TCGTCTTGCAGCTTCTGGATGCGGCAGACAAGGAGGAAGCGGAGGTGCGG
GCAGAATGCCTGCGGGAATTGGGTTTATATTTAGGTCAGTCCACAGTCCC
CTTCGTCGATCATCTCTTTCAAGCCTTGCGGACCGGGAGCTATCGTGAGC
TCTCGTCCGAGCCGGAGCAACAGAATGCGCAAGGGATATATGAAAAGGGC
GGTAATTGGGATCGAGGCAGTGATGGCGAGGGAGAACGGAGTGATGAATA
CGAGGAAGCCGGTGGAGGGGATACCGACGAGGGGGTAGACCGGGGTGGGC
ACCGCGGTTCGCACGAAAGCCAGGAGTGGGACATTTTGTACGAAGAGGGC
ACCGATGCCGTCGGGCATGGGTACAGCACGGGAGATGGCATGGAGCAAGA
CCTGAAGGCGTCGTCTGAGCCACCCACCCGTCCCCCTGGACGGTGA
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protein sequence of rna2639

>rna2639-protein ID=rna2639-protein|Name=rna2639|organism=Nannochloropsis gaditana|type=polypeptide|length=554bp
MTWLGKSRRVVHLCLFPNGLRAGTGKSRSSLGRLLEHGPLPASPVFPHGR
RSISCGKRSNRISTFPQVSRLACFQPGAAPLSSPQRLFSSLPPHQVVGLP
ALSPTMEHGTIASWTKKEGDSFGPGDVICEIETDKAVVSFDAQDEGILAK
ILVQPSAGEVRVGQPIMVTVEDAANVAAFANFSPDAAEPAPPKAAAPSPA
ASTPAPSTPSPPPSPPSSPPTSAAAGVSLLGYPGRVFASPLAKTLAGQLG
HDLRAIPGTGPNGRVLAADVREYVPPVVAERPTETIPAEAVRASAPAHAS
TVEKVAGAPIHGAGFTDYRVSEAGRGVAARLTVAKQTVPHYYLTVDLELD
KLLSLRETLNKELGEKEMGLSVNDFLLKAAALASKKVPEANASWHGDFVR
QYHAVDVNLVLGVGDGLLAPVIRNVDSKGLRALSAEVAGLVGGAERGELS
EEALQTGTFTLINVGMYGVKAVAPIVSLPQACVLGVGAIENRVVPAAAPL
KGEAAGEGEGEVYRVVPGVTVTLSCDHRVIDGAVGAQWLSAFKSLVEEPM
TLLL
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mRNA from alignment at CM002459.1:861763..864070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2639 ID=rna2639|Name=rna2639|organism=Nannochloropsis gaditana|type=mRNA|length=2308bp|location=Sequence derived from alignment at CM002459.1:861763..864070+ (Nannochloropsis gaditana)
caagcCATCTTTTTATACATTCAATTTGGCTGATTCTGTCTGATTCGCAA
CCATGTCACGATTCTGACGGGAAGAGATGGACGGCGGGCCATATGTGTTG
GATTATCATGCGACTTCCGGCCTTTGCAGGCCTTTCCTAGTCTACTTGTC
TCTCGCGTTTGGCAAGGCGATGATGATCTTCGTTTAATGCCGGTACACAC
CCTCATTACACCACTCCTCGGCAACAGGCATCCCTCTGAACATGACTTGG
CTGGGCAAGAGTCGCCGGGTCGTTCACTTGTGCCTCTTCCCCAATGGATT
GCGCGCCGGTACTGGGAAGTCGAGAAGCTCTTTGGGTCGGCTCCTGGAGC
ACGGACCGCTTCCGGCCTCACCAGTATTCCCGCACGGTAGAAGAAGCATT
AGCTGCGGCAAAAGAAGCAACAGGATTTCAACGTTCCCTCAGGTATCGAG
ACTAGCCTGTTTCCAACCAGGAGCAGCCCCGCTGTCCTCTCCGCAGCGTT
TGTTCAGCTCCTTGCCGCCGCACCAAGTGGTAGGCCTCCCCGCACTCTCT
CCCACCATGGAACACGGAACCATCGCCTCatggacgaagaaggaaggaga
cagtTTCGGCCCTGGTGATGTGATATGTGAGATAGAGACGGACAAGGCCG
TGGTCTCCTTTGATGCTCAGGATGAGGGCATTCTTGCCAAGATTCTTGTC
CAGCCAAGTGCCGGAGAAGTCCGTGTCGGGCAACCTATCATGGTCACAGT
CGAGGACGCCGCCAATGTGGCCGCCTTTGCCAATTTTTCCCCCGACGCGG
CAGAACCGGCGCCCCCCAAGGCagccgccccttcccccgccgcctccacg
cctgccccttcgacgccgtctccgccgccctcccccccttcctcccctcc
gacctcggccgccgccggcgtCTCCCTGCTGGGTTATCCTGGCCGCGTAT
TCGCCAGTCCGCTGGCCAAGACCCTCGCGGGACAGCTCGGTCACGACCTA
CGTGCGATCCCTGGCACGGGACCCAACGGGCGGGTTTTGGCAGCGGACGT
GCGCGAATACGTCCCGCCCGTCGTCGCGGAGAGGCCCACTGAAACGATTC
CGGCCGAAGCAGTTCGGGCCAGCGCGCCTGCACACGCCTCCAccgtggag
aaggtggcCGGTGCCCCCATACACGGCGCGGGGTTCACGGACTACCGGGT
GtcggaggcggggcggggagtggCGGCGCGCCTGACGGTGGCCAAGCAGA
CCGTCCCACATTACTACCTGACTGTGGACCTGGAGCTGGACAAGCTCCTG
TCCTTGCGAGAGACGCTGAACAAGGAgctgggcgagaaggagatgggcct
GTCCGTGAACGACTTTCTcttgaaggcggcggccttggcgagCAAGAAAG
TCCCGGAGGCCAACGCGTCCTGGCACGGCGACTTCGTCAGGCAATACCAC
GCCGTAGACGTGAACTTGGTTCTGGGTGTCGGAGATGGGCTGCTCGCTCC
CGTCATCCGCAATGTGGACAGCAAGGGCTTGCGGGCCTTGTCAGCCGAAG
TGGCTGGGCTTGTAGGCGGCGCAGAGAGGGGCGAGCTGTCAGAGGAGGCG
CTCCAGACTGGCACCTTTACCTTGATCAATGTGGGTATGTACGGTGTGAA
GGCCGTCGCGCCGATCGTCAGCTTGCCCCAGGCCTGTGTCTTGGGCGTGG
GGGCAATCGAAAACCGGGTGGTGCCAGCCGCCGCGCCTCTGAAGGGGGAa
gcagcgggggagggggagggagaggtctaCCGTGTCGTGCCCGGGGTCAC
AGTGACGTTGAGCTGTGACCACCGGGTGATTGATGGTGCTGTAGGTGCGC
AGTGGCTGAGTGCCTTCAAaagcctggtggaggagcccATGACTCTTTTG
TTGTAGCACAGGGAAGGCGTTGTAGGCTTCGGGAAAGGTAAAAAGGCATT
TGAGGTGTGAGGACGCGGATCAAGTTTTGTTCAGGGACATAGGGACGGTA
TACACCCGTCGAAGCAATTGGAAAGGACCACGTTGACGTCgcacaaaaag
aaaattcTGGAACAGGGTCAAAGCTATGTGCGACAATGTTTGCGCGGGGC
TTGCTTGATCTGTCAACACGCGTCTGGGATTTGGCTGGAAGCCTCACGTG
GATGGTGTGTGCTGTGAACTTGTTCTTCATCTTTACCTCTCCGGGAGAGT
TAATGGATTCTTCCTTCTCAGTCgcctggaggccgtgggtCATATGCACA
TATCACAGAGCGGGAAATATTTCAGCTTGCACGTTTCTACCCACAAGCAG
CACAATTC
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Coding sequence (CDS) from alignment at CM002459.1:861763..864070+

>rna2639 ID=rna2639|Name=rna2639|organism=Nannochloropsis gaditana|type=CDS|length=1665bp|location=Sequence derived from alignment at CM002459.1:861763..864070+ (Nannochloropsis gaditana)
ATGACTTGGCTGGGCAAGAGTCGCCGGGTCGTTCACTTGTGCCTCTTCCC
CAATGGATTGCGCGCCGGTACTGGGAAGTCGAGAAGCTCTTTGGGTCGGC
TCCTGGAGCACGGACCGCTTCCGGCCTCACCAGTATTCCCGCACGGTAGA
AGAAGCATTAGCTGCGGCAAAAGAAGCAACAGGATTTCAACGTTCCCTCA
GGTATCGAGACTAGCCTGTTTCCAACCAGGAGCAGCCCCGCTGTCCTCTC
CGCAGCGTTTGTTCAGCTCCTTGCCGCCGCACCAAGTGGTAGGCCTCCCC
GCACTCTCTCCCACCATGGAACACGGAACCATCGCCTCatggacgaagaa
ggaaggagacagtTTCGGCCCTGGTGATGTGATATGTGAGATAGAGACGG
ACAAGGCCGTGGTCTCCTTTGATGCTCAGGATGAGGGCATTCTTGCCAAG
ATTCTTGTCCAGCCAAGTGCCGGAGAAGTCCGTGTCGGGCAACCTATCAT
GGTCACAGTCGAGGACGCCGCCAATGTGGCCGCCTTTGCCAATTTTTCCC
CCGACGCGGCAGAACCGGCGCCCCCCAAGGCagccgccccttcccccgcc
gcctccacgcctgccccttcgacgccgtctccgccgccctcccccccttc
ctcccctccgacctcggccgccgccggcgtCTCCCTGCTGGGTTATCCTG
GCCGCGTATTCGCCAGTCCGCTGGCCAAGACCCTCGCGGGACAGCTCGGT
CACGACCTACGTGCGATCCCTGGCACGGGACCCAACGGGCGGGTTTTGGC
AGCGGACGTGCGCGAATACGTCCCGCCCGTCGTCGCGGAGAGGCCCACTG
AAACGATTCCGGCCGAAGCAGTTCGGGCCAGCGCGCCTGCACACGCCTCC
AccgtggagaaggtggcCGGTGCCCCCATACACGGCGCGGGGTTCACGGA
CTACCGGGTGtcggaggcggggcggggagtggCGGCGCGCCTGACGGTGG
CCAAGCAGACCGTCCCACATTACTACCTGACTGTGGACCTGGAGCTGGAC
AAGCTCCTGTCCTTGCGAGAGACGCTGAACAAGGAgctgggcgagaagga
gatgggcctGTCCGTGAACGACTTTCTcttgaaggcggcggccttggcga
gCAAGAAAGTCCCGGAGGCCAACGCGTCCTGGCACGGCGACTTCGTCAGG
CAATACCACGCCGTAGACGTGAACTTGGTTCTGGGTGTCGGAGATGGGCT
GCTCGCTCCCGTCATCCGCAATGTGGACAGCAAGGGCTTGCGGGCCTTGT
CAGCCGAAGTGGCTGGGCTTGTAGGCGGCGCAGAGAGGGGCGAGCTGTCA
GAGGAGGCGCTCCAGACTGGCACCTTTACCTTGATCAATGTGGGTATGTA
CGGTGTGAAGGCCGTCGCGCCGATCGTCAGCTTGCCCCAGGCCTGTGTCT
TGGGCGTGGGGGCAATCGAAAACCGGGTGGTGCCAGCCGCCGCGCCTCTG
AAGGGGGAagcagcgggggagggggagggagaggtctaCCGTGTCGTGCC
CGGGGTCACAGTGACGTTGAGCTGTGACCACCGGGTGATTGATGGTGCTG
TAGGTGCGCAGTGGCTGAGTGCCTTCAAaagcctggtggaggagcccATG
ACTCTTTTGTTGTAG
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Synonyms
Publications