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Properties
| Property Name | Value |
|---|
| Product | pre-mrna-splicing factor 38b |
| Orig transcript id | gnl|cribi|Naga_100044g3.1059.mrna |
| Orig protein id | gnl|cribi|Naga_100044g3.1059 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:856129..857749 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2635 ID=rna2635|Name=rna2635|organism=Nannochloropsis gaditana|type=mRNA|length=3848bp
AATCTTACTCTTTACAACTTTCATGAGTTAACCCTTCCTAAGCACATACA
TGTACGTTTGAGCGCGGTACAAGCCGCTAGAGAGGCAGGGATGACCTCCT
TCCTCGCCATGTGATGATTAAAAAGGTCACAGAACAATGTGTCTCTGCAC
GAAGCCACATGTCTGACACACGCACAAAACACTGCACGGCTCTTTATACG
GGTGCGACGACAAGAGGTGGACGAGTCCTGGCTGTCTTGGGGGTTCACAC
TGAAGTGAAGACGGAGGAGACGTCTTGAGCGATTCCCGGCGACTTGCTGG
CCGTAGCGGACGAGGAGGAGGACCCTGCAGAGGTTACGAGGCACACAATC
CACAACGACGGTGGCCACACCCACCTCCGTGTCAGAAGGTCTTAGCAACG
AGGTTTGGTGGGCTTTGACCTGACGGCGTACGTGCTCTCAATCCATGCGC
GAGTTCGAGCAGCCTGCCTGACCCCACCCGTGAGAGAGGAGGTTTTAAAT
CGCCTTTTTTCAGCCAGAAGGGCCTACATGTTTCGTCGGGTCACTCCCTT
CTAGCTCAAGCATCATTGATGAATACACGACGCTGTTCATAGGAAATCAA
AGCTATCATCGAGGCGCCGTAAAAGAATAAGGGTAATCAGGAAGTCACTG
ACCACCGGACATGGAGCATTAAACATATGTATCTCTCAGCACTTCTCGAA
CTCGTCGCTTATATTACAAAATAGAGGTAAGGGCTGGTCGTGCTTTGGAG
TCTCTCCGACAAATTTCTTGAAACTTCACAAGACCACTATTATAGCATGA
TGTATCTTAAACAGAGGCTGCTAGGGCCTTAGTAAGCGAAGATAACACCA
CTTGAACATCAGGTCCGCGCCTCTGAGTAACGGTAGGACTGAGCTTTCTC
GCTCCGTGGGCCCGGGCTCAGCCCTTCAGTCCCTAAGGCATCTGGTGTCT
TCACAAACACAGTGAGAGCCCTCTGTTGGCCTTACATGCCCTGAAATATG
AATTTAAATCGACACACCAATGAAACTGGTTTCCGAGCTCGCTTCTCTGA
ACTTCAACGAACTTCCATCGGAATTCAAATTTTGAGTTTTTGACCCTCTT
TGCCCGCCACTGTCCACCCCTGATGACCAAAGTGCTTTCCTTGAACCGAT
GAGACGTCGAGCTACTGATGAATTGATTAATTCAAGCAAATAAGGTGAAA
AAGATCTGATCGCCCTCGCGCGCAGCAAATTGCGTGCTTTAGTCTAAGGT
AGAAACGTCCCACCTCGTAAAGCCGGCGACTTGAAAGAGCAAGAAACGGT
TTGTCGGCGAACCATTATCAGAACATAAGACCCTGATAGAGCCAAGATCT
TCGTGAATGGCAGCCAATGAGTCAGTGGTCAGTCACAACTTATGCATGAG
ACTGCGCCCGCGTCGCCAGCAGCGGGTCTGTCCAAACAGAGGGGTTTTTT
AAGGGGGGCTACGATGAAGGGGGAACTACAGGCGCCCTCAGGGCTCTCGC
GGGCTTAGGGACGGAGCCCCTGGCAAAAACGCATTTTGGTGCCGAAAGCG
CATTTTCCGATCACAAGTCGGAGACCCACATAGTTTATCTGGTCACCTTC
ACTAGCTTTAGCGTTTTTCATGATAAAAAAAATCATCAATGCTTGGTGAC
CCTTTGTGACCCCTGCTATATGGGAAATAGCAGGTAATAGTGAGCCGTTA
CAATAAGTTGACCGATCAAACGTCGCGTACATAAATAAAGTTGCAGAATT
TTTCAGCAGATCAACGTTATATCAATACAATACTATATCCTCCAAAGTGT
CGTTACTATTTCTCACATGGGCCCCTGTTTTTTTTTTAATTTCTCTTCTT
ATTTATCTACTGCAAAGGGCGCCACTCGGCCTTCTGATGAGATCGATTGC
GAAGTGAAAGGGGACACTCATATCGGTGGCGAGTGAGGGACCCTACCTGA
AAAGTCATTAAAGAAAGCGAGCACATACTGTAACATGGCGTTTCTTGCTC
GAGCAAGGGGCGGTCAGCATGGCAATGTACGCGACGAAATACAGGTTCGA
CGCAAGGACGCACACCTGCGGAGGAAAATCAATCTGAAATATGCTACTCT
TATGCTTATGTCGGCCTTGATTTTGACATGTGCTTCTATGAAATCAAAGA
CACTGGAAGGTTTGTTTTTACCAGGTCCAGGTAGAACCCAGAAAGCAGAT
GGTAACATTATGATGCACACCGATTCTTCTCTGCAAGGCTCTGACGCGGA
GGTATCAGAATCTTCAAGCAAACAAGGAATGGAGGAAGCGAACGACCTGA
AAACAGCCTCGCCACTCAATTTAGAGGGCGGTAATAGGCAGGTGGCTTTT
GCCACGGCACGCGGTGATACACCCTCTTTCTCTTCTGACCTTGTAGAGTC
TCCAGCGCCGTTGTCACAGGAGGGCGCACAATACATATCGGGCGGTGCCT
CCCCCGGCGTACGACCCAACACCACCTTATCTGAAGAGTTGAGTCAGAGC
TACTTTGCATCTTTCATCAAGAATCTCAGCTCGTCAGATGATCCACTTAT
AAAAACTGCGGGAGCTATTTTGGCTCGCAAACAGAAGCATGGCAACTGCA
ACATCGACGACGCGAAAGACGTCGATCCTTGGAACAGACATGATGGATTC
CGCCGCGATGTGGCTATCTGCATGCAAATATCAAATGATGCAGGGATTAT
GGACGAGTACATAGCTTTCCACTGGGTGCAAGATGTAGGAAAATTCGTCA
TTTACGACGATGGATCAAGTGATAATATCTGGTCGGTGCTGGAGAAATAT
GTGGCGCTGGGCATTGTTGAGTACCACAACATTTCAGGCAGTCCCATCCA
TGGCACAGTTAACCTGCAAACCCGGGCCATGAACAAATGCTTCACAATGT
TACGAGAGCGTGCAGTGGAGGAAGGTCTGCGATGGATTGCGTTCCCCGAC
ACTGATGAGTTTGTTCTGTCCTCAATTCCCAATGAGACATTATCCGAAAC
ACTCAACAAGAACTACGTAGGTGAGGCATGCTTAAGAATACATCGAACTT
GGTACGGGTCGTCATTTCAGCACAAGAAACCTTCGAGTCTGGTGACGGAG
ACGTACCTCATGGCATCCAATGACTACGGCGGCGGAATTTGGAACCCCAA
GCTCATTGCCAACATATATCCTGAAGGAAAACCCATGAATGCGACGGCCC
TCACTGTCATCCATAATTTTAAAGACGAAGACAAAATTCAATGCAAGCCT
CAGCAAGAGATAAAAGACATTCGCATCAACCACTACTTGCGGAGCTTGGA
AGAATACAGCGAGAAGAGTGTGTACAAAGACGTGATGCATGAATGGCTGA
AAGAGCCATTAAAACAGTTCTTTCGAAGAGACTTCAACCTGGTGTCAAGC
CCCATTGCCGCAGACTATTCGTGCCGTGTCCATGCTCTTCTAAAACAAAT
CCAAAAGATGAAGCATGCTGGTAAGATTCCTGCTGTAAGAAGGCCTGAGC
CTTGAAATGGTACTAAAAAATAGCTTTTGGAAGATCAGCACGGAGCGGAG
GGGCTGCACTAAGGCTGTTTCGTGAATGACTTTCCATTTGACATCCAAGC
TAAGGAAGAGCTTCATGCTTTGTGTACCATATACGAGCATGACCTTTTAA
AAAGATGCAGGAGGCATGATGCTTCCCAAGTGCGACATTTCACGAGAAGC
GACATGCGGTGCACAGGAAAAAAAAATGAACGAAGAAAAAAGAATCGAGT
CTCTCTCTTCTCGAATCAATTCCTCGAGTTATGAAGATACGGATTACATA
TGTACGCTATGGATGTGGACGCCGGGAAAAACAATGCAAACCATGACC back to topprotein sequence of rna2635 >rna2635-protein ID=rna2635-protein|Name=rna2635|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLAN
NIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLF
KFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLD
DSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRL
VLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDR
DEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD back to topmRNA from alignment at CM002459.1:856129..857749+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2635 ID=rna2635|Name=rna2635|organism=Nannochloropsis gaditana|type=mRNA|length=1621bp|location=Sequence derived from alignment at CM002459.1:856129..857749+ (Nannochloropsis gaditana)
ATGTCAAGGGCAGCTTTATGGAAGGCTGATCAGCTCCGGGCCACCCAGCC
AGTTTTAgcagccccgccccctcctgaGGCGTTACCCTCGGGAGCACTCC
CTATTCATGGAAATCAAACTACCTACAACGTCAACACCCTGCTGGCTAAC
AACATTATGGGTTGCGACTATTTTCGGGCCCTTTATCCGCTTCAAACGTA
CCACGAAGTCATCGATGAAGTCTACAACAAGGTCACCCATGTCGAACCCT
GGGCCACAGGAACGTCGCGTCTGCCCTCCACGGcgttctgcctcctcttc
aagtAAGTAGTGCAGGTAATGTGGTGGACAGCAGGCAGGAATCATCTGGA
AGGATGCATACATTCATCATTTGGGAGATGGGCTTTATCGGAAGCACCCC
ACTGAGAACCTGTTGATCACGAGAGCGAAGACCCCTTCGCATGCCCTGTG
CGCCCTTaaccccttttctcctcttatGCATGCCATCGGCAGGTTTTTTA
CGATGCGTCTGACGAAGAAGCAGGTCACTGGCTTGTTAACACACTCGGAC
TCGCCATACATCCGTGCCATTGGATTTCTTTACCTCCGATACGCCTGCGA
CCCCAAGCAAATTTGGGACTGGTATGCGCCCTACCTGGACGACTCTGAGG
AATTCGCGCCCTCATCGGACCCGAATGCATTGACAACCCTGGGACTCTGG
CTGCGGGGTCTCTTGTCTGACCTGCACTACTACGGGACGATGCTCCCGCG
GATCCCAGTGCCCCTCGAGAGGAAGATCAAAATGCGTCTGGTGCTcgtgg
acgagaagaaaaagcgggcAGCGGGCAACCGACGGCAGATGGGAGCCTTT
CGGGCGGGGGCCCGTGTGAAAGCCATCTACGAGGATGCCGAGAACGACCC
TGCTTGGTACGGTGCAGTCATCAGTGAGGTGtatgaggcggaggaggggg
aggaggagacgtaCCTGGTAACCTTCGAGGGGTACGGCAatcaggaggtg
gtggggcttGGAGATATGATGCTGCAGGACGGCGGCTCGGCAAGGACCTC
GATGGACGTGGGTGGGCAGCGGGACGCGAGCGCGGACAGGCGGCGGAGCC
GGAGTCGGAGCAACGGGCGGAGCCGAAGtcgggagaggcggcggagtCGA
AGTCGTAGCCGCTCCTTcgaccgggggaggaggtctgACCGAGACAGTGc
cagggacggggagaggagagaaaggggaagaaaaggaagaggaggagaag
gagagagttTACTTGGGCGGGAACTTTTGGAAGAGGTGCgtaggaaggag
agagaggcggcggcggcgcgaGGAAAGGAGTATGGGCAGCGTCCGGCTAC
CTTTAAGggctccttgtccttgaaaGTGGACACCTATTCCCACCGGAGCA
AGACCACCTCGCACGGTGGAGATCGCCGCCGGTCCCGGTCCCGGTCTTAC
GAGTCTCGACCTCGACACGGCGCCAGGCAGAAACAGTCGCCTCCCATGTC
AAAGGACCGGGACGAAGATCGGCGAGAACGACGGCAGCTTGCTCCCAAGC
CTGAATCCCAGAAACTTAAGGCGCTGAAAGCATTTTATGGGGATGCCTCG
GCGCACCGACAGGACGATTGA back to topCoding sequence (CDS) from alignment at CM002459.1:856129..857749+ >rna2635 ID=rna2635|Name=rna2635|organism=Nannochloropsis gaditana|type=CDS|length=2583bp|location=Sequence derived from alignment at CM002459.1:856129..857749+ (Nannochloropsis gaditana)
ATGTCAAGGGCAGCTTTATGGAAGGCTGATCAGCTCCGGGCCACCCAGCC
AGTTTTAgcagccccgccccctcctgaGGCGTTACCCTCGGGAGCACTCC
CTATTCATGGAAATCAAACTACCTACAACGTCAACACCCTGCTGGCTAAC
AACATTATGGGTTGCGACTATTTTCGGGCCCTTTATCCGCTTCAAACGTA
CCACGAAGTCATCGATGAAGTCTACAACAAGGTCACCCATGTCGAACCCT
GGGCCACAGGAACGTCGCGTCTGCCCTCCACGGcgttctgcctcctcttc
aaGTTTTTTACGATGCGTCTGACGAAGAAGCAGGTCACTGGCTTGTTAAC
ACACTCGGACTCGCCATACATCCGTGCCATTGGATTTCTTTACCTCCGAT
ACGCCTGCGACCCCAAGCAAATTTGGGACTGGTATGCGCCCTACCTGGAC
GACTCTGAGGAATTCGCGCCCTCATCGGACCCGAATGCATTGACAACCCT
GGGACTCTGGCTGCGGGGTCTCTTGTCTGACCTGCACTACTACGGGACGA
TGCTCCCGCGGATCCCAGTGCCCCTCGAGAGGAAGATCAAAATGCGTCTG
GTGCTcgtggacgagaagaaaaagcgggcAGCGGGCAACCGACGGCAGAT
GGGAGCCTTTCGGGCGGGGGCCCGTGTGAAAGCCATCTACGAGGATGCCG
AGAACGACCCTGCTTGGCAGAAACAGTCGCCTCCCATGTCAAAGGACCGG
GACGAAGATCGGCGAGAACGACGGCAGCTTGCTCCCAAGCCTGAATCCCA
GAAACTTAAGGCGCTGAAAGCATTTTATGGGGATGCCTCGGCGCACCGAC
AGGACGATTGAATGTCAAGGGCAGCTTTATGGAAGGCTGATCAGCTCCGG
GCCACCCAGCCAGTTTTAgcagccccgccccctcctgaGGCGTTACCCTC
GGGAGCACTCCCTATTCATGGAAATCAAACTACCTACAACGTCAACACCC
TGCTGGCTAACAACATTATGGGTTGCGACTATTTTCGGGCCCTTTATCCG
CTTCAAACGTACCACGAAGTCATCGATGAAGTCTACAACAAGGTCACCCA
TGTCGAACCCTGGGCCACAGGAACGTCGCGTCTGCCCTCCACGGcgttct
gcctcctcttcaaGTTTTTTACGATGCGTCTGACGAAGAAGCAGGTCACT
GGCTTGTTAACACACTCGGACTCGCCATACATCCGTGCCATTGGATTTCT
TTACCTCCGATACGCCTGCGACCCCAAGCAAATTTGGGACTGGTATGCGC
CCTACCTGGACGACTCTGAGGAATTCGCGCCCTCATCGGACCCGAATGCA
TTGACAACCCTGGGACTCTGGCTGCGGGGTCTCTTGTCTGACCTGCACTA
CTACGGGACGATGCTCCCGCGGATCCCAGTGCCCCTCGAGAGGAAGATCA
AAATGCGTCTGGTGCTcgtggacgagaagaaaaagcgggcAGCGGGCAAC
CGACGGCAGATGGGAGCCTTTCGGGCGGGGGCCCGTGTGAAAGCCATCTA
CGAGGATGCCGAGAACGACCCTGCTTGGCAGAAACAGTCGCCTCCCATGT
CAAAGGACCGGGACGAAGATCGGCGAGAACGACGGCAGCTTGCTCCCAAG
CCTGAATCCCAGAAACTTAAGGCGCTGAAAGCATTTTATGGGGATGCCTC
GGCGCACCGACAGGACGATTGAATGTCAAGGGCAGCTTTATGGAAGGCTG
ATCAGCTCCGGGCCACCCAGCCAGTTTTAgcagccccgccccctcctgaG
GCGTTACCCTCGGGAGCACTCCCTATTCATGGAAATCAAACTACCTACAA
CGTCAACACCCTGCTGGCTAACAACATTATGGGTTGCGACTATTTTCGGG
CCCTTTATCCGCTTCAAACGTACCACGAAGTCATCGATGAAGTCTACAAC
AAGGTCACCCATGTCGAACCCTGGGCCACAGGAACGTCGCGTCTGCCCTC
CACGGcgttctgcctcctcttcaaGTTTTTTACGATGCGTCTGACGAAGA
AGCAGGTCACTGGCTTGTTAACACACTCGGACTCGCCATACATCCGTGCC
ATTGGATTTCTTTACCTCCGATACGCCTGCGACCCCAAGCAAATTTGGGA
CTGGTATGCGCCCTACCTGGACGACTCTGAGGAATTCGCGCCCTCATCGG
ACCCGAATGCATTGACAACCCTGGGACTCTGGCTGCGGGGTCTCTTGTCT
GACCTGCACTACTACGGGACGATGCTCCCGCGGATCCCAGTGCCCCTCGA
GAGGAAGATCAAAATGCGTCTGGTGCTcgtggacgagaagaaaaagcggg
cAGCGGGCAACCGACGGCAGATGGGAGCCTTTCGGGCGGGGGCCCGTGTG
AAAGCCATCTACGAGGATGCCGAGAACGACCCTGCTTGGCAGAAACAGTC
GCCTCCCATGTCAAAGGACCGGGACGAAGATCGGCGAGAACGACGGCAGC
TTGCTCCCAAGCCTGAATCCCAGAAACTTAAGGCGCTGAAAGCATTTTAT
GGGGATGCCTCGGCGCACCGACAGGACGATTGA back to top
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