EWM28045.1, cds2627 (CDS) Nannochloropsis gaditana

Overview
NameEWM28045.1
Unique Namecds2627
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:856129..856430 +
Alignment locationCM002459.1:856621..857034 +
Alignment locationCM002459.1:857605..857749 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28045.1
Productpre-mrna-splicing factor 38b
Orig transcript idgnl|cribi|Naga_100044g3.1059.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:856129..856430 +
CM002459.1supercontigCM002459.1:856621..857034 +
CM002459.1supercontigCM002459.1:857605..857749 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38
Homology
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|585110387|gb|EWM28045.1| (pre-mrna-splicing factor 38b [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD 286
            MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD
Sbjct:    1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD 286          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|698792610|ref|XP_009829337.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574115994|gb|ETV81479.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 271.937 bits (694), Expect = 3.828e-86
Identity = 133/262 (50.76%), Postives = 171/262 (65.27%), Query Frame = 0
Query:    1 MSRAALWKADQLRA--------TQPVLAAPPPPEAL----------------PSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL + +  +A        T P++ A  P  A+                    LPIHGNQTTYN NTLL +N+M  DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT  Q+ GLL H DSP+IR +GFLYLRY CDP+ +W+WY P+LDD EEF  SS+   LTT+G W+R LL DL+Y+ T+LPRIP  ++  IK++L+L  +KK+R A N   +     G +VKA+Y D ++ PA
Sbjct:    1 MSRSALTRVEMQQALASRATATTNPMVHAIYPGTAMMQVPVDPYYVEEARRVKENQLPIHGNQTTYNFNTLLYDNVMNSDYFRKLYELATYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVDSPFIRCVGFLYLRYTCDPELLWEWYEPFLDDEEEFNASSNDAILTTMGAWIRSLLEDLNYFNTILPRIPKKIQDGIKVKLLLHGQKKQRQAANLAIVEYLVKGTKVKAMYTDEDHPPA 262          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|698792608|ref|XP_009829336.1| (hypothetical protein H257_05987 [Aphanomyces astaci] >gi|574115993|gb|ETV81478.1| hypothetical protein H257_05987 [Aphanomyces astaci])

HSP 1 Score: 274.248 bits (700), Expect = 8.763e-86
Identity = 133/262 (50.76%), Postives = 171/262 (65.27%), Query Frame = 0
Query:    1 MSRAALWKADQLRA--------TQPVLAAPPPPEAL----------------PSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL + +  +A        T P++ A  P  A+                    LPIHGNQTTYN NTLL +N+M  DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT  Q+ GLL H DSP+IR +GFLYLRY CDP+ +W+WY P+LDD EEF  SS+   LTT+G W+R LL DL+Y+ T+LPRIP  ++  IK++L+L  +KK+R A N   +     G +VKA+Y D ++ PA
Sbjct:    1 MSRSALTRVEMQQALASRATATTNPMVHAIYPGTAMMQVPVDPYYVEEARRVKENQLPIHGNQTTYNFNTLLYDNVMNSDYFRKLYELATYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVDSPFIRCVGFLYLRYTCDPELLWEWYEPFLDDEEEFNASSNDAILTTMGAWIRSLLEDLNYFNTILPRIPKKIQDGIKVKLLLHGQKKQRQAANLAIVEYLVKGTKVKAMYTDEDHPPA 262          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|301100426|ref|XP_002899303.1| (pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4] >gi|262104220|gb|EEY62272.1| pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4])

HSP 1 Score: 273.092 bits (697), Expect = 1.267e-85
Identity = 126/242 (52.07%), Postives = 172/242 (71.07%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL HSDSPYIR +GFLYLR+ CDP+++W W+ PYL+DSEEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + GA+V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRDQNAEDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHDLYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHSDSPYIRVVGFLYLRFTCDPEELWTWFEPYLEDSEEFNASANPSLKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIVDRLKPGAKVRAMYADEENEPA 242          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|673049567|ref|XP_008878744.1| (hypothetical protein H310_13137 [Aphanomyces invadans] >gi|574465671|gb|ETV92707.1| hypothetical protein H310_13137 [Aphanomyces invadans])

HSP 1 Score: 270.781 bits (691), Expect = 1.701e-84
Identity = 131/260 (50.38%), Postives = 167/260 (64.23%), Query Frame = 0
Query:    1 MSRAALWKAD--QLRATQPVLAAPPPPEALPSGA--------------------LPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL + +  Q  A +  +A    P   P+ A                    LPIHGNQ+TYN NTLL +N+M  DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT  Q+ GLL H DSPYIR +GFLYLRY CDP+ +W+WY PYL D EEF  SS+    TT+G W+R LL D++Y+ T+LPRIP  ++  IK++L+L D+ KKR   N   +     G ++KA+Y D +N PA
Sbjct:    1 MSRSALTRVELQQALANRAAVANAMVPMMYPAAAMQVPIDPYYVEEARRVKENQLPIHGNQSTYNFNTLLYDNVMNSDYFRKLYELTTYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTINQMQGLLKHVDSPYIRCVGFLYLRYTCDPELLWEWYEPYLGDDEEFNASSNDAIRTTMGAWIRSLLEDINYFNTILPRIPKKIQDGIKVKLLLYDQTKKRHDENLAIVEFLVKGTKIKAMYSDEDNAPA 260          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|570987722|gb|ETP46354.1| (hypothetical protein F442_07391 [Phytophthora parasitica P10297])

HSP 1 Score: 270.011 bits (689), Expect = 2.653e-84
Identity = 123/242 (50.83%), Postives = 171/242 (70.66%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + G +V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|675190085|ref|XP_008903927.1| (hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310] >gi|568096066|gb|ETN10821.1| hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310])

HSP 1 Score: 269.626 bits (688), Expect = 3.674e-84
Identity = 123/242 (50.83%), Postives = 171/242 (70.66%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + G +V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|567963068|gb|ETK88574.1| (hypothetical protein L915_07193 [Phytophthora parasitica] >gi|567991770|gb|ETL41971.1| hypothetical protein L916_07141 [Phytophthora parasitica] >gi|570953189|gb|ETP18446.1| hypothetical protein F441_07333 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 268.855 bits (686), Expect = 9.388e-84
Identity = 122/242 (50.41%), Postives = 170/242 (70.25%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIR +GFLYLR+ CDP+++W W+ P+L+D EEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + G +V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|568021017|gb|ETL95126.1| (hypothetical protein L917_07030 [Phytophthora parasitica])

HSP 1 Score: 267.314 bits (682), Expect = 2.760e-83
Identity = 122/242 (50.41%), Postives = 170/242 (70.25%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KF  MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + G +V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242          
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|570329461|gb|ETO77409.1| (hypothetical protein F444_07395 [Phytophthora parasitica P1976])

HSP 1 Score: 266.159 bits (679), Expect = 8.560e-83
Identity = 121/242 (50.00%), Postives = 169/242 (69.83%), Query Frame = 0
Query:    1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
            MSR+AL +    ++ +   A   PPE     +    LPI+GN TTYN+NTLL  NI+   YF  LY  +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KF  MRLT+KQ+ GLL H+DSPYIR +GFLYLR+ CDP+++W W+ P+L+D EEF  S++P+  TT+G WL  LL + +Y+GT+LPRIP  +E  IK++L+L+  KK+RA  N   +   + G +V+A+Y D EN+PA
Sbjct:    1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242          
The following BLAST results are available for this feature:
BLAST of EWM28045.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110387|gb|EWM28045.1|0.000e+0100.00pre-mrna-splicing factor 38b [Nannochloropsis gadi... [more]
gi|698792610|ref|XP_009829337.1|3.828e-8650.76hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698792608|ref|XP_009829336.1|8.763e-8650.76hypothetical protein H257_05987 [Aphanomyces astac... [more]
gi|301100426|ref|XP_002899303.1|1.267e-8552.07pre-mRNA-splicing factor 38B, putative [Phytophtho... [more]
gi|673049567|ref|XP_008878744.1|1.701e-8450.38hypothetical protein H310_13137 [Aphanomyces invad... [more]
gi|570987722|gb|ETP46354.1|2.653e-8450.83hypothetical protein F442_07391 [Phytophthora para... [more]
gi|675190085|ref|XP_008903927.1|3.674e-8450.83hypothetical protein PPTG_09890 [Phytophthora para... [more]
gi|567963068|gb|ETK88574.1|9.388e-8450.41hypothetical protein L915_07193 [Phytophthora para... [more]
gi|568021017|gb|ETL95126.1|2.760e-8350.41hypothetical protein L917_07030 [Phytophthora para... [more]
gi|570329461|gb|ETO77409.1|8.560e-8350.00hypothetical protein F444_07395 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2635rna2635Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications