EWM28045.1, cds2627 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|585110387|gb|EWM28045.1| (pre-mrna-splicing factor 38b [Nannochloropsis gaditana]) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD 286
MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD
Sbjct: 1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAWQKQSPPMSKDRDEDRRERRQLAPKPESQKLKALKAFYGDASAHRQDD 286
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|698792610|ref|XP_009829337.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574115994|gb|ETV81479.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 271.937 bits (694), Expect = 3.828e-86 Identity = 133/262 (50.76%), Postives = 171/262 (65.27%), Query Frame = 0
Query: 1 MSRAALWKADQLRA--------TQPVLAAPPPPEAL----------------PSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + + +A T P++ A P A+ LPIHGNQTTYN NTLL +N+M DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT Q+ GLL H DSP+IR +GFLYLRY CDP+ +W+WY P+LDD EEF SS+ LTT+G W+R LL DL+Y+ T+LPRIP ++ IK++L+L +KK+R A N + G +VKA+Y D ++ PA
Sbjct: 1 MSRSALTRVEMQQALASRATATTNPMVHAIYPGTAMMQVPVDPYYVEEARRVKENQLPIHGNQTTYNFNTLLYDNVMNSDYFRKLYELATYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVDSPFIRCVGFLYLRYTCDPELLWEWYEPFLDDEEEFNASSNDAILTTMGAWIRSLLEDLNYFNTILPRIPKKIQDGIKVKLLLHGQKKQRQAANLAIVEYLVKGTKVKAMYTDEDHPPA 262
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|698792608|ref|XP_009829336.1| (hypothetical protein H257_05987 [Aphanomyces astaci] >gi|574115993|gb|ETV81478.1| hypothetical protein H257_05987 [Aphanomyces astaci]) HSP 1 Score: 274.248 bits (700), Expect = 8.763e-86 Identity = 133/262 (50.76%), Postives = 171/262 (65.27%), Query Frame = 0
Query: 1 MSRAALWKADQLRA--------TQPVLAAPPPPEAL----------------PSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + + +A T P++ A P A+ LPIHGNQTTYN NTLL +N+M DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT Q+ GLL H DSP+IR +GFLYLRY CDP+ +W+WY P+LDD EEF SS+ LTT+G W+R LL DL+Y+ T+LPRIP ++ IK++L+L +KK+R A N + G +VKA+Y D ++ PA
Sbjct: 1 MSRSALTRVEMQQALASRATATTNPMVHAIYPGTAMMQVPVDPYYVEEARRVKENQLPIHGNQTTYNFNTLLYDNVMNSDYFRKLYELATYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVDSPFIRCVGFLYLRYTCDPELLWEWYEPFLDDEEEFNASSNDAILTTMGAWIRSLLEDLNYFNTILPRIPKKIQDGIKVKLLLHGQKKQRQAANLAIVEYLVKGTKVKAMYTDEDHPPA 262
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|301100426|ref|XP_002899303.1| (pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4] >gi|262104220|gb|EEY62272.1| pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4]) HSP 1 Score: 273.092 bits (697), Expect = 1.267e-85 Identity = 126/242 (52.07%), Postives = 172/242 (71.07%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL HSDSPYIR +GFLYLR+ CDP+++W W+ PYL+DSEEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + GA+V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRDQNAEDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHDLYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHSDSPYIRVVGFLYLRFTCDPEELWTWFEPYLEDSEEFNASANPSLKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIVDRLKPGAKVRAMYADEENEPA 242
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|673049567|ref|XP_008878744.1| (hypothetical protein H310_13137 [Aphanomyces invadans] >gi|574465671|gb|ETV92707.1| hypothetical protein H310_13137 [Aphanomyces invadans]) HSP 1 Score: 270.781 bits (691), Expect = 1.701e-84 Identity = 131/260 (50.38%), Postives = 167/260 (64.23%), Query Frame = 0
Query: 1 MSRAALWKAD--QLRATQPVLAAPPPPEALPSGA--------------------LPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + + Q A + +A P P+ A LPIHGNQ+TYN NTLL +N+M DYFR LY L TYHEV+DE+Y +V H EPWA GTSR+PST FCLL KF TMRLT Q+ GLL H DSPYIR +GFLYLRY CDP+ +W+WY PYL D EEF SS+ TT+G W+R LL D++Y+ T+LPRIP ++ IK++L+L D+ KKR N + G ++KA+Y D +N PA
Sbjct: 1 MSRSALTRVELQQALANRAAVANAMVPMMYPAAAMQVPIDPYYVEEARRVKENQLPIHGNQSTYNFNTLLYDNVMNSDYFRKLYELTTYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTINQMQGLLKHVDSPYIRCVGFLYLRYTCDPELLWEWYEPYLGDDEEFNASSNDAIRTTMGAWIRSLLEDINYFNTILPRIPKKIQDGIKVKLLLYDQTKKRHDENLAIVEFLVKGTKIKAMYSDEDNAPA 260
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|570987722|gb|ETP46354.1| (hypothetical protein F442_07391 [Phytophthora parasitica P10297]) HSP 1 Score: 270.011 bits (689), Expect = 2.653e-84 Identity = 123/242 (50.83%), Postives = 171/242 (70.66%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + G +V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|675190085|ref|XP_008903927.1| (hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310] >gi|568096066|gb|ETN10821.1| hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310]) HSP 1 Score: 269.626 bits (688), Expect = 3.674e-84 Identity = 123/242 (50.83%), Postives = 171/242 (70.66%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + G +V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|567963068|gb|ETK88574.1| (hypothetical protein L915_07193 [Phytophthora parasitica] >gi|567991770|gb|ETL41971.1| hypothetical protein L916_07141 [Phytophthora parasitica] >gi|570953189|gb|ETP18446.1| hypothetical protein F441_07333 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 268.855 bits (686), Expect = 9.388e-84 Identity = 122/242 (50.41%), Postives = 170/242 (70.25%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KFF MRLT+KQ+ GLL H+DSPYIR +GFLYLR+ CDP+++W W+ P+L+D EEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + G +V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|568021017|gb|ETL95126.1| (hypothetical protein L917_07030 [Phytophthora parasitica]) HSP 1 Score: 267.314 bits (682), Expect = 2.760e-83 Identity = 122/242 (50.41%), Postives = 170/242 (70.25%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KF MRLT+KQ+ GLL H+DSPYIRA+GFLYLR+ CDP+++W W+ P+L+D EEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + G +V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242
BLAST of EWM28045.1 vs. NCBI_GenBank
Match: gi|570329461|gb|ETO77409.1| (hypothetical protein F444_07395 [Phytophthora parasitica P1976]) HSP 1 Score: 266.159 bits (679), Expect = 8.560e-83 Identity = 121/242 (50.00%), Postives = 169/242 (69.83%), Query Frame = 0
Query: 1 MSRAALWKADQLRATQPVLAAPPPPEA----LPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPA 238
MSR+AL + ++ + A PPE + LPI+GN TTYN+NTLL NI+ YF LY +TYHEV+DE+Y +V H EPW+ GT+R+PS+ FCLL KF MRLT+KQ+ GLL H+DSPYIR +GFLYLR+ CDP+++W W+ P+L+D EEF S++P+ TT+G WL LL + +Y+GT+LPRIP +E IK++L+L+ KK+RA N + + G +V+A+Y D EN+PA
Sbjct: 1 MSRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPA 242 The following BLAST results are available for this feature:
BLAST of EWM28045.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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