rna2630, rna2630 (mRNA) Nannochloropsis gaditana

Overview
Namerna2630
Unique Namerna2630
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length477
Alignment locationCM002459.1:834821..835071 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100044g7.1088.mrna
Orig protein idgnl|cribi|Naga_100044g7.1088
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:834821..835071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100044g7gene2515Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2630rna2630-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28074.1cds2622Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2630 ID=rna2630|Name=rna2630|organism=Nannochloropsis gaditana|type=mRNA|length=477bp
ATGTCTATACGATTAATCTGTACACATTCCATCGTAGGTGCAGGTTGTTC
AAGTTCCACCATGATGATGTGCATAACTCGTCCTATCCGCCTTGCTGCAT
TTACTAAAAGAGCAAGCGGACGGACGTTTGCTGCAGCAGCCGCAGAGGCA
GAAGACAAAGTAGTACTTGCAAAGGATTTCAAAGCCTTTTCAGACGAAAC
AACGGTCAATGAGCGCGTTGTGGCCTACTTTACAGCTTCGTGGTGTCCAC
CATGCCGGACTATCTCCCCTGTCTTCTCGACTCTCAGCAGCAAATACTCT
GACGTCAAATTTTTGAAAATAGATGTGGATGCCAACGAGGAAGCCGCAAG
CAAAAGCAATATTCGAACCATTCCGGCTTTTCACTTTTACCGCAAGGGCA
AACTTGTGGGCACGTTCGCCGGCGCGGACGAGAAAAAACTGACAGAGGGG
ATCGAGGACTTGGAGGGCCGCCCCTGA
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protein sequence of rna2630

>rna2630-protein ID=rna2630-protein|Name=rna2630|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MKGPIDDDYVSRRGAYEISRNKIRRWETKKSSLLSHYLQSWKRLDKHHLE
LVYIRFWEVHVVRTTG
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mRNA from alignment at CM002459.1:834821..835071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2630 ID=rna2630|Name=rna2630|organism=Nannochloropsis gaditana|type=mRNA|length=251bp|location=Sequence derived from alignment at CM002459.1:834821..835071+ (Nannochloropsis gaditana)
ATGAAGGGACCAATTGATGAGTAGCGTGTACATAcgcagggggaaaggcc
cGGACGATGGCACAGAGAAGCGACTACGTTTCACGGAGGGGTGCTTATGA
GATTAGTCGTAATAAGATTCGTCGATGGGAAACTAAAAAGAGTAGTTTGC
TCAGCCACTACTTACAGTCGTGGAAACGGTTGGATAAACATCATCTAGAG
CTTGTCTACATTCGATTTTGGGAGGTCCATGTGGTCAGGACGACAGGATG
A
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Coding sequence (CDS) from alignment at CM002459.1:834821..835071+

>rna2630 ID=rna2630|Name=rna2630|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002459.1:834821..835071+ (Nannochloropsis gaditana)
ATGAAGGGACCAATTGATGACGACTACGTTTCACGGAGGGGTGCTTATGA
GATTAGTCGTAATAAGATTCGTCGATGGGAAACTAAAAAGAGTAGTTTGC
TCAGCCACTACTTACAGTCGTGGAAACGGTTGGATAAACATCATCTAGAG
CTTGTCTACATTCGATTTTGGGAGGTCCATGTGGTCAGGACGACAGGATG
AATGAAGGGACCAATTGATGACGACTACGTTTCACGGAGGGGTGCTTATG
AGATTAGTCGTAATAAGATTCGTCGATGGGAAACTAAAAAGAGTAGTTTG
CTCAGCCACTACTTACAGTCGTGGAAACGGTTGGATAAACATCATCTAGA
GCTTGTCTACATTCGATTTTGGGAGGTCCATGTGGTCAGGACGACAGGAT
GA
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Synonyms
Publications