rna263, rna263 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna263
Unique Name	rna263
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2198
Alignment location	CM002455.1:664644..665933 +

Link to JBrowse

Properties


Property Name	Value
Product	Uncharacterized protein family UPF0317
Orig transcript id	gnl\|cribi\|Naga_100026g53.10653.mrna
Orig protein id	gnl\|cribi\|Naga_100026g53.10653
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:664644..665933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g53	gene252	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna263	rna263-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30399.1	cds263	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:664644..665933+
coding sequence from alignment at CM002455.1:664644..665933+

mRNA sequence

>rna263 ID=rna263|Name=rna263|organism=Nannochloropsis gaditana|type=mRNA|length=2198bp
TAGCAGGGCTGTTCGCGACTGTTTTCGTTCTGAGGCTCCTTCCACTGTCA
AGCCGAGGGGTGCATGTGGCCCTTCTTTTGCAATTCAGTCAGCCGCTATG
ACAGGACCCCTGTCACCCACCAGCCTTGGAGCCGCGACAAATATTGAGCC
TTCAGCCATCGAGGGCCGAAATGCTACGCTCGCTTTCGAGAAGGTCGATT
TGCAGTGGATAAATATCAACTATACTGTCAAAGATGGAAAGAAAGGGTGC
ACAAGCAAGAAGGTTCTTACATGGCAGTCTGGAAGAGCGAGGAGCGGAGA
AATTCTAGCCATTATGGGACCATCAGGTTCTGGCAAAACCAGTCTTCTAA
ATGCACTTGCAGGTCGCATTCTCTATGCCAAAGAGGCGTCACTTTCTGGA
TTGGTGCTTACAAATGGTCAACCCCGGAATGGCAGCGACTTCAAACGAAT
TTCAGCCTACGTCACTCAAGATGACGTTCTATATGCTTTTTTGACTGTAT
GGGAGACTATCTGGCTATCTGCTCAGCTTCATCTTCCCCCAACGATCTCA
CATGAGGAGAAGAAAAGAGAAGTTGATGCAATTATACAAGAACTGGGCCT
GGTCAAAGCACAACAAACAATTATTGGCAACGAACGCACACGCGGTGTGA
GCGGGGGAGAGCGACGGAGGGTCATGATTGCTGTGGAGCTCATATCTGGG
CCTTCCATCATATTTTTAGATGAACCGACGAGTGGGTTAGATAGCTTCCA
AGCGCAATCCGTCGTGTCCGCACTCAAGACTCTCGCCGAAGAAGGCCGAA
CGATAGTTACAGTCATCCATCAACCGCGCTCGTCTATCTTTCAGATGTTT
GACCGGCTGCACCTGCTCTCTGATGGCCGTACAATCTATTTTGGTGAGAC
TGGGCCAGCTGTCAAGTATTTCGAAGATATTGGGTGGAAGTGTCCTCCGC
TGTGGAACGCTGCCGATTTTCTCTTGGATCTAATTGCTACAGATTATCGA
TCAGCAAAAGCAGAGAAAGATAGCAAGGAGCGAGTCGCTGCACTTTATCA
GAAGAATCTCGAGAGGGAACAGACTTGTGTGTGCACCCCAACGCAAAATT
TGGATGCGTTCGTCCCTGCACCGCTACTTCATTCTGGCACCACGAATCGG
ATAGAAAGCTCATTCACGAGTGGTGTATTCGGTAAGAGCCGGAAGGGATC
GACATGGGCACAGCAATTTATCCTTTTGGCGTGGCGCTCTGCTCGCGACT
CGCTGCGAAATACCGAAGTGATTGTGGCCAAGTTTGCAATAAGCGCACTG
CTAGGAACTTTAGTAGGAGCCATGTATTCAAATATAGGTAATGGGCAGCA
GTCGATCTACGACCGCAAGGGCGTTCTTTTCTTCGTCACCATCAATCAAG
CGTTTGGGCTCATCACCACCGTGTGTGGCACTTTTCCAAAAGAGCGCAAA
ATTGTCCTGAGAGAACGGGCCTGCAATAGCTACCACATTTCTGCCTACTA
TCTCGCAAAGTTCTTTAGCGAGTTACCGTTTCATCTCATCAGCCCTTTAG
TATTGGGAACGATTGTCTATTGGATGGCCCATCTACGACCGGAGTTTGGA
CGTTTTATGGCATTTATGGGCATCATAACATTGGAATCTATTGCTGCAGT
CGCCCTAGGCATGGCGATTAGTTCAGTCTCCTCGTCCGCTGAAGTGGCAA
CCATCCTGGCCAATCCTATCTCGGTTGTCATGCTTATCTCAGGCGGGTTC
TACATAAGCATACAGTCCTTACCGGCAGCAGCCCAGTGGGTGGCTGACTT
GTCGCTGATGAAATGGTCCTTTCAAGCCCTTGTGGTGAACGAGTTCGAAG
GCACGACGCTAACGTGTACAGAGCAAGACAGACACTGCCTTGCAACAGGC
GCCGAAGCCATTGCAAATATCGGTTTCGCGGGAAGCACAGTGTGGGATGG
AGCAGCAGGCTTAATTATTCTTACACTCGCACTAAATTTCATAGCCTACA
CAATAATGCGGTACAACAAGCCCCGATATCAAAGCTTGCTCGCTGCAACA
ACCGCATTTCCTACAGATGGTCCAGAGACAGACTAAAATACAAGCAAGAC
TCGCTAAAGGTACGTGGATATAGAGGACAGAGCCATCTTTAAAAATCAAA
GAAATGAATCCGTTATGATCCGTCGAAGTAAGCTCCCAGCTGCTCGGG

protein sequence of rna263

>rna263-protein ID=rna263-protein|Name=rna263|organism=Nannochloropsis gaditana|type=polypeptide|length=269bp
MIMQTPNAFDTPAALRQKIRGGRHTGTTAGCCPGFVQANLVILPIEHALE
FMTFCIRNPKPCPLLDITDPGSPHPPTWLANDGADVRTDLPMYRVWQNGK
LLKEADDVTDYWRDDFVVFFLGCSFSFEEALVKANLSVRHLEEGKNVPMY
KTNIPCRPAGPFQGNMVVSMRPYRPEQLGRVSEVTSRMKAVHGGPIHTGD
PAAIGIIDLGQPDYGDAVSIASDEVPVFFACGVTPQNVILDCRLPGIAIT
HAPGAMFVTDVLNDFLTQN

mRNA from alignment at CM002455.1:664644..665933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna263 ID=rna263|Name=rna263|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp|location=Sequence derived from alignment at CM002455.1:664644..665933+ (Nannochloropsis gaditana)
GTCCACGACTGGGCCCAGAACTTAACCCATTAGCCATTATGACATTTTAC
CTTTTTGTCCATAAATCGCGTGCGCTTGTCGTAGCTTCACTAATTGAGCT
CGGGCTACTGCAACACACAGAGAGCGACACGCCTGGATGACACTTCTCGT
AATGTGAGAGAGCGAGTGGATGATTATGCAAACACCAAATGCGTTTGATA
CTCCAGCGGCATTACGCCAGAAAATTCGGGGGGGGCGCCACACAGGCACC
ACGGCAGGTTGCTGCCCTGGATTCGTGCAAGCCaacctcgtcatcctccc
gaTAGAACACGCTCTTGAATTCATGACCTTCTGCATCCGCAATCCGAAGC
CTTGCCCGCTGCTGGATATTACAGATCCTGGCAGTCCCCATCCACCCACG
TGGTTGGCGAATGACGGAGCCGACGTGCGAACAGATCTCCCAATGTACCG
AGGTGCGTCAAATAACGTTGAATGGCAGTAAAGGATGCTAAGATTCATGA
CACGCTTACTCTCGGCTTGTTACGGCACCATGGGTGAAGCAAAAGGAATG
CCAAAGAGTAAGTTTCTGAACGCCATCAAACTGatgtttttccttcctcg
aaACTATACAGTGTGGCAAAACGGGAAACTGCTCAAAGAAGCCGATGACG
TCACTGACTACTGGCGAGATGACTTCGTGGTCTTCTTTTTGGGatgttcc
ttctccttcgaaGAAGCTTTGGTGAAAGCCAATCTCTCTGTGCGTCACCT
TGAAGAAGGCAAGAATGTACCAATGTACAAGACGAACATTCCATGCCGTC
CTGCTGGCCCGTTTCAAGGAAATATGGTTGTGTCCATGCGCCCCTATCGC
CCAGAGCAATTAGGCAGGGTTTCAGAGGTCACATCACGCATGAAGGCTGT
ACATGGAGGACCCATTCATACAGGTGATCCTGCAGCGATAGGCATTATCG
ATCTAGGCCAGCCAGACTACGGTGATGCTGTGTCGATCGCATCAGACGAA
GTGCCTGTCTTTTTTGCTTGTGGTGTCACCCCCCAGAATGTGATTCTGGA
TTGTAGATTACCAGGAATCGCCATCACTCATGCTCCAGGCGCCATGTTTG
TTACTGATGTCTTGAATGACTTCCTGACACAGAACTAGGATTCCTCCGGG
CTTCCGTTTTGAAGGACCCGCACTCGAGCATTTCATCTTAACCATTAACG
CTTCACTTTCCATGGGGCTCCATTTGCCATAAGTAATCACGCTTCCGAAA
AGAAAATGCTGTGATGTGCACCTGCGCCGATGACATACGA

Coding sequence (CDS) from alignment at CM002455.1:664644..665933+

>rna263 ID=rna263|Name=rna263|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002455.1:664644..665933+ (Nannochloropsis gaditana)
ATGATTATGCAAACACCAAATGCGTTTGATACTCCAGCGGCATTACGCCA
GAAAATTCGGGGGGGGCGCCACACAGGCACCACGGCAGGTTGCTGCCCTG
GATTCGTGCAAGCCaacctcgtcatcctcccgaTAGAACACGCTCTTGAA
TTCATGACCTTCTGCATCCGCAATCCGAAGCCTTGCCCGCTGCTGGATAT
TACAGATCCTGGCAGTCCCCATCCACCCACGTGGTTGGCGAATGACGGAG
CCGACGTGCGAACAGATCTCCCAATGTACCGAGTGTGGCAAAACGGGAAA
CTGCTCAAAGAAGCCGATGACGTCACTGACTACTGGCGAGATGACTTCGT
GGTCTTCTTTTTGGGatgttccttctccttcgaaGAAGCTTTGGTGAAAG
CCAATCTCTCTGTGCGTCACCTTGAAGAAGGCAAGAATGTACCAATGTAC
AAGACGAACATTCCATGCCGTCCTGCTGGCCCGTTTCAAGGAAATATGGT
TGTGTCCATGCGCCCCTATCGCCCAGAGCAATTAGGCAGGGTTTCAGAGG
TCACATCACGCATGAAGGCTGTACATGGAGGACCCATTCATACAGGTGAT
CCTGCAGCGATAGGCATTATCGATCTAGGCCAGCCAGACTACGGTGATGC
TGTGTCGATCGCATCAGACGAAGTGCCTGTCTTTTTTGCTTGTGGTGTCA
CCCCCCAGAATGTGATTCTGGATTGTAGATTACCAGGAATCGCCATCACT
CATGCTCCAGGCGCCATGTTTGTTACTGATGTCTTGAATGACTTCCTGAC
ACAGAACTAGATGATTATGCAAACACCAAATGCGTTTGATACTCCAGCGG
CATTACGCCAGAAAATTCGGGGGGGGCGCCACACAGGCACCACGGCAGGT
TGCTGCCCTGGATTCGTGCAAGCCaacctcgtcatcctcccgaTAGAACA
CGCTCTTGAATTCATGACCTTCTGCATCCGCAATCCGAAGCCTTGCCCGC
TGCTGGATATTACAGATCCTGGCAGTCCCCATCCACCCACGTGGTTGGCG
AATGACGGAGCCGACGTGCGAACAGATCTCCCAATGTACCGAGTGTGGCA
AAACGGGAAACTGCTCAAAGAAGCCGATGACGTCACTGACTACTGGCGAG
ATGACTTCGTGGTCTTCTTTTTGGGatgttccttctccttcgaaGAAGCT
TTGGTGAAAGCCAATCTCTCTGTGCGTCACCTTGAAGAAGGCAAGAATGT
ACCAATGTACAAGACGAACATTCCATGCCGTCCTGCTGGCCCGTTTCAAG
GAAATATGGTTGTGTCCATGCGCCCCTATCGCCCAGAGCAATTAGGCAGG
GTTTCAGAGGTCACATCACGCATGAAGGCTGTACATGGAGGACCCATTCA
TACAGGTGATCCTGCAGCGATAGGCATTATCGATCTAGGCCAGCCAGACT
ACGGTGATGCTGTGTCGATCGCATCAGACGAAGTGCCTGTCTTTTTTGCT
TGTGGTGTCACCCCCCAGAATGTGATTCTGGATTGTAGATTACCAGGAAT
CGCCATCACTCATGCTCCAGGCGCCATGTTTGTTACTGATGTCTTGAATG
ACTTCCTGACACAGAACTAG

Synonyms

Publications