rna2629, rna2629 (mRNA) Nannochloropsis gaditana

Overview
Namerna2629
Unique Namerna2629
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length605
Alignment locationCM002459.1:833959..834790 +

Link to JBrowse

Properties
Property NameValue
Productthioredoxin
Orig transcript idgnl|cribi|Naga_100044g8.1067.mrna
Orig protein idgnl|cribi|Naga_100044g8.1067
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:833959..834790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100044g8gene2514Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2629rna2629-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28053.1cds2621Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2629 ID=rna2629|Name=rna2629|organism=Nannochloropsis gaditana|type=mRNA|length=605bp
AACTCACAGGGCACATCATGGCAAGCCGACATACCATTCTGCTTGTTCAG
CCCACGCGTGCCGCGTCCTCCCGCACTTTCTTTGACTTTCCCACAGTGTA
CGAGGCGATGGACGAGGTAGTCAAGATGTATGAAAAGCAGCTGAAGCAAC
TTAATCCCAGCATCCCGCATATAACCTACGACATTACGCATCTTCTCAGA
TTCGTAGACGACCTCGTCGACCTCTCTGCCCTCGTTTTTGACCCTCGAAC
CAAGCAATATTCGCCCCATTCCAAGGAATGGGTCAAGAGCAAGATTTACG
AGAACCTGAAGCAGCAGGCTGGAGGGGGGCGCTGAGGGCAGTAGGGCGGA
GGATGTGGAGGATACCCGGACCATGTGTGGGGAAGGGGTGGCTTTCTAAC
ATAAAAAAACAAATTGTGAGAAGAAGAGAGCAGCTCCATGCAAAAGTAAC
GAGCAACGTGCTGAGAAAGGGTATCAGGTGACAGAGGGGCGTTTGGTGCA
CAGGCGAGCTTGGGATTTTTTTGGCGTTTTTGCATCCTTGATTCTTTGAC
AACACCGTTCTCTCTTTGGCCAAGGGTTAATGCTGTCTCGGTCGCTCGGA
TAGGA
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protein sequence of rna2629

>rna2629-protein ID=rna2629-protein|Name=rna2629|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEA
EDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYS
DVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEG
IEDLEGRP
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mRNA from alignment at CM002459.1:833959..834790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2629 ID=rna2629|Name=rna2629|organism=Nannochloropsis gaditana|type=mRNA|length=832bp|location=Sequence derived from alignment at CM002459.1:833959..834790+ (Nannochloropsis gaditana)
ATGTCTATGTGACTATCATTGCGTGTACGGCTTTCCCGCGCGCTTCGAAC
CGCTCGACCCgacctcccacccccctgcccctggccGTGCCATAATTAGA
CCCGGCGACGCACATTCGCCTTGGTCTCCAGCCCCGCGTGAGAGTTCCGA
TCGTCCTTGCCGGAATATAGACGATTAATCTGTACACATTCCATCGTAGG
TGCAGGTTGTTCAAGTTCCACCATGATGATGTGCATAACTCGTCCTATCC
GCCTTGCTGCATTTACTAAAAGAGCAAGCGGACGGACGTTtgctgcagca
gccgcagaGGCAGAAGACAAAGTAGTACTTGCAAAGGATTTCAAAGCCTT
TTCAGACGAAACAACGGTCAATGAGCGCGTTGTGGCCTACTTTACAGCTT
CGTGGTGTCCACCATGCCGGACTATCTCCCCTGTCTTCTCGACTCTCAGC
AGCAAATACTCTGACGTCAAATTTTTGAAAATAGATGTaagtgaaggaag
gacaTACTGAACATGACGGAGAAAAGAAATTGTTTTTGCACGCCAATGTG
TAGGTGATAAATGCAATCTCTCTCGACGTGCTCAGCGGTACCCTTACCGC
AGGGATCTACGAACATAAAACTCTTTCACCTGGAAGGCGCTGTGATTCTT
TCTTACTCTCTTTAAAATATCACATGTAGGTGGATGCCAACGAGGAAGCC
GCAAGCAAAAGCAATATTCGAACCATTCCGGCTTTTCACTTTTACCGCAA
GGGCAAACTTGTGGGCACGTTCGCCGGCGCGGACGAGAAAAAACTGACAG
AGGGGATCGAGGACTTGGAGGGCCGCCCCTGA
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Coding sequence (CDS) from alignment at CM002459.1:833959..834790+

>rna2629 ID=rna2629|Name=rna2629|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002459.1:833959..834790+ (Nannochloropsis gaditana)
ATGTCTATACGATTAATCTGTACACATTCCATCGTAGGTGCAGGTTGTTC
AAGTTCCACCATGATGATGTGCATAACTCGTCCTATCCGCCTTGCTGCAT
TTACTAAAAGAGCAAGCGGACGGACGTTtgctgcagcagccgcagaGGCA
GAAGACAAAGTAGTACTTGCAAAGGATTTCAAAGCCTTTTCAGACGAAAC
AACGGTCAATGAGCGCGTTGTGGCCTACTTTACAGCTTCGTGGTGTCCAC
CATGCCGGACTATCTCCCCTGTCTTCTCGACTCTCAGCAGCAAATACTCT
GACGTCAAATTTTTGAAAATAGATGTGGATGCCAACGAGGAAGCCGCAAG
CAAAAGCAATATTCGAACCATTCCGGCTTTTCACTTTTACCGCAAGGGCA
AACTTGTGGGCACGTTCGCCGGCGCGGACGAGAAAAAACTGACAGAGGGG
ATCGAGGACTTGGAGGGCCGCCCCTGAATGTCTATACGATTAATCTGTAC
ACATTCCATCGTAGGTGCAGGTTGTTCAAGTTCCACCATGATGATGTGCA
TAACTCGTCCTATCCGCCTTGCTGCATTTACTAAAAGAGCAAGCGGACGG
ACGTTtgctgcagcagccgcagaGGCAGAAGACAAAGTAGTACTTGCAAA
GGATTTCAAAGCCTTTTCAGACGAAACAACGGTCAATGAGCGCGTTGTGG
CCTACTTTACAGCTTCGTGGTGTCCACCATGCCGGACTATCTCCCCTGTC
TTCTCGACTCTCAGCAGCAAATACTCTGACGTCAAATTTTTGAAAATAGA
TGTGGATGCCAACGAGGAAGCCGCAAGCAAAAGCAATATTCGAACCATTC
CGGCTTTTCACTTTTACCGCAAGGGCAAACTTGTGGGCACGTTCGCCGGC
GCGGACGAGAAAAAACTGACAGAGGGGATCGAGGACTTGGAGGGCCGCCC
CTGAATGTCTATACGATTAATCTGTACACATTCCATCGTAGGTGCAGGTT
GTTCAAGTTCCACCATGATGATGTGCATAACTCGTCCTATCCGCCTTGCT
GCATTTACTAAAAGAGCAAGCGGACGGACGTTtgctgcagcagccgcaga
GGCAGAAGACAAAGTAGTACTTGCAAAGGATTTCAAAGCCTTTTCAGACG
AAACAACGGTCAATGAGCGCGTTGTGGCCTACTTTACAGCTTCGTGGTGT
CCACCATGCCGGACTATCTCCCCTGTCTTCTCGACTCTCAGCAGCAAATA
CTCTGACGTCAAATTTTTGAAAATAGATGTGGATGCCAACGAGGAAGCCG
CAAGCAAAAGCAATATTCGAACCATTCCGGCTTTTCACTTTTACCGCAAG
GGCAAACTTGTGGGCACGTTCGCCGGCGCGGACGAGAAAAAACTGACAGA
GGGGATCGAGGACTTGGAGGGCCGCCCCTGA
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Synonyms
Publications