EWM28053.1, cds2621 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|585110395|gb|EWM28053.1| (thioredoxin [Nannochloropsis gaditana]) HSP 1 Score: 324.324 bits (830), Expect = 2.687e-112 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158
MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP
Sbjct: 1 MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1173951996|gb|OQR99758.1| (hypothetical protein THRCLA_21795 [Thraustotheca clavata]) HSP 1 Score: 99.7525 bits (247), Expect = 1.925e-23 Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 0
Query: 47 AAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
A A +V + A+++ + V YFTA WC PC+ ISP+++ LS+ ++D++F K+DVD +E A+++ +R +P FHFY GKL + FAGAD KKL +E+L
Sbjct: 78 AVSAASRVQVLDSNDAYAELIAKPSKTVVYFTAQWCGPCKMISPIYAQLSNDFTDIEFAKVDVDELDEVAAQAGVRAMPTFHFYANGKLQNSLGFAGADPKKLLATVENL 187
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|813119405|ref|XP_012196255.1| (hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65] >gi|641539209|gb|KDO33018.1| hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 97.8265 bits (242), Expect = 2.687e-23 Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 0
Query: 63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
++D + V YFTA+WC PC+ ISP+++ LS+++ DV+F K+DVD +E A+K+ +R +P FHFY GKL FAGAD K+L ++ L
Sbjct: 38 YTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|669164762|ref|XP_008617943.1| (hypothetical protein SDRG_13624 [Saprolegnia diclina VS20] >gi|530730304|gb|EQC28546.1| hypothetical protein SDRG_13624 [Saprolegnia diclina VS20]) HSP 1 Score: 97.8265 bits (242), Expect = 2.806e-23 Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 0
Query: 63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
++D + V YFTA+WC PC+ ISP+++ LS+++ DV+F K+DVD +E A+K+ +R +P FHFY GKL FAGAD K+L ++ L
Sbjct: 38 YTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072229409|gb|OEU14144.1| (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 96.6709 bits (239), Expect = 4.669e-23 Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
+NE+ + YFTA+WCPPC+ I PV+ +LS +Y ++ F KID+D N+++A + I ++P F F+ KG K G F+GAD+++L + ++DL P
Sbjct: 18 MNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 109
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1173928854|gb|OQR82287.1| (hypothetical protein ACHHYP_16274 [Achlya hypogyna]) HSP 1 Score: 97.0561 bits (240), Expect = 6.253e-23 Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 0
Query: 63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDLE 155
++D + V YFTA+WC PC+ ISP+++ LS++++D++F K+DVD +E A+K+ +R +P FHFY GKL + FAGAD K+L ++ L+
Sbjct: 38 YTDLIAKPTKSVVYFTAAWCGPCKMISPIYAELSNEFTDIEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQSLGFAGADPKQLFNNVKKLK 132
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072221246|gb|OEU06051.1| (thioredoxin o [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 97.0561 bits (240), Expect = 8.841e-23 Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 0
Query: 69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
+NE+ + YFTA+WCPPC+ I PV+ +LS++Y ++ F KID+D N+++A + I ++P F F+ KG K G F+GAD+++L + I+DL P
Sbjct: 53 MNEKSILYFTATWCPPCKLIKPVYESLSNEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNDKGEKKYGQFSGADQEQLKKIIDDLNNEP 144
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072229410|gb|OEU14145.1| (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 96.2857 bits (238), Expect = 1.552e-22 Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 0
Query: 69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
+NE+ + YFTA+WCPPC+ I PV+ +LS +Y ++ F KID+D N+++A + I ++P F F+ KG K G F+GAD+++L + ++DL P
Sbjct: 51 MNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 142
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|301114747|ref|XP_002999143.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111237|gb|EEY69289.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-22 Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = 0
Query: 31 LAAFTKRASGRTFA---AAAAEAEDKVVLAKDFKAFSDETT--VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVG--TFAGADEKKLTEGIEDLE 155
L FT R S R A ++ A+ +V + A++ TT + + YFTA WCPPC+ I P++ LS+KY D+ F K+DVD + SK+ +R++P F +++ GK +F+GADE+ L ++ L
Sbjct: 2 LKVFTSRTSLRVLRGSRALSSSAQSRVKIIGSDDAYTQITTEGTGRKAIVYFTAKWCPPCKMIGPIYDKLSAKYEDIDFAKLDVDELNDTTSKAGVRSMPTFFYFKDGKFQQSLSFSGADEELLRSNVKQLN 133
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|831289342|ref|XP_012676111.1| (PREDICTED: thioredoxin-like [Clupea harengus]) HSP 1 Score: 94.3597 bits (233), Expect = 2.977e-22 Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0
Query: 73 VVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGI 151
VV FTA+WC PC++I+P F +LS KY DV FLK+DVD ++ A + +I+ +P FHFY+ GK V F+G++ +KL E +
Sbjct: 23 VVVDFTATWCGPCQSIAPFFKSLSEKYKDVVFLKVDVDDAQDVAQECDIKCMPTFHFYKNGKKVDDFSGSNREKLEEMV 101 The following BLAST results are available for this feature:
BLAST of EWM28053.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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