EWM28053.1, cds2621 (CDS) Nannochloropsis gaditana

Overview
NameEWM28053.1
Unique Namecds2621
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:833959..833966 +
Alignment locationCM002459.1:834129..834444 +
Alignment locationCM002459.1:834638..834790 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28053.1
Productthioredoxin
Orig transcript idgnl|cribi|Naga_100044g8.1067.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:833959..833966 +
CM002459.1supercontigCM002459.1:834129..834444 +
CM002459.1supercontigCM002459.1:834638..834790 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|585110395|gb|EWM28053.1| (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 324.324 bits (830), Expect = 2.687e-112
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158
            MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP
Sbjct:    1 MSIRLICTHSIVGAGCSSSTMMMCITRPIRLAAFTKRASGRTFAAAAAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1173951996|gb|OQR99758.1| (hypothetical protein THRCLA_21795 [Thraustotheca clavata])

HSP 1 Score: 99.7525 bits (247), Expect = 1.925e-23
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 0
Query:   47 AAEAEDKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
            A  A  +V +     A+++      + V YFTA WC PC+ ISP+++ LS+ ++D++F K+DVD  +E A+++ +R +P FHFY  GKL  +  FAGAD KKL   +E+L
Sbjct:   78 AVSAASRVQVLDSNDAYAELIAKPSKTVVYFTAQWCGPCKMISPIYAQLSNDFTDIEFAKVDVDELDEVAAQAGVRAMPTFHFYANGKLQNSLGFAGADPKKLLATVENL 187          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|813119405|ref|XP_012196255.1| (hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65] >gi|641539209|gb|KDO33018.1| hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 97.8265 bits (242), Expect = 2.687e-23
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
            ++D      + V YFTA+WC PC+ ISP+++ LS+++ DV+F K+DVD  +E A+K+ +R +P FHFY  GKL     FAGAD K+L   ++ L
Sbjct:   38 YTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|669164762|ref|XP_008617943.1| (hypothetical protein SDRG_13624 [Saprolegnia diclina VS20] >gi|530730304|gb|EQC28546.1| hypothetical protein SDRG_13624 [Saprolegnia diclina VS20])

HSP 1 Score: 97.8265 bits (242), Expect = 2.806e-23
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDL 154
            ++D      + V YFTA+WC PC+ ISP+++ LS+++ DV+F K+DVD  +E A+K+ +R +P FHFY  GKL     FAGAD K+L   ++ L
Sbjct:   38 YTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072229409|gb|OEU14144.1| (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.6709 bits (239), Expect = 4.669e-23
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
            +NE+ + YFTA+WCPPC+ I PV+ +LS +Y ++ F KID+D N+++A +  I ++P F F+  KG K  G F+GAD+++L + ++DL   P
Sbjct:   18 MNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 109          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1173928854|gb|OQR82287.1| (hypothetical protein ACHHYP_16274 [Achlya hypogyna])

HSP 1 Score: 97.0561 bits (240), Expect = 6.253e-23
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   63 FSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADEKKLTEGIEDLE 155
            ++D      + V YFTA+WC PC+ ISP+++ LS++++D++F K+DVD  +E A+K+ +R +P FHFY  GKL  +  FAGAD K+L   ++ L+
Sbjct:   38 YTDLIAKPTKSVVYFTAAWCGPCKMISPIYAELSNEFTDIEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQSLGFAGADPKQLFNNVKKLK 132          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072221246|gb|OEU06051.1| (thioredoxin o [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 97.0561 bits (240), Expect = 8.841e-23
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 0
Query:   69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
            +NE+ + YFTA+WCPPC+ I PV+ +LS++Y ++ F KID+D N+++A +  I ++P F F+  KG K  G F+GAD+++L + I+DL   P
Sbjct:   53 MNEKSILYFTATWCPPCKLIKPVYESLSNEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNDKGEKKYGQFSGADQEQLKKIIDDLNNEP 144          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|1072229410|gb|OEU14145.1| (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 96.2857 bits (238), Expect = 1.552e-22
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   69 VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADEKKLTEGIEDLEGRP 158
            +NE+ + YFTA+WCPPC+ I PV+ +LS +Y ++ F KID+D N+++A +  I ++P F F+  KG K  G F+GAD+++L + ++DL   P
Sbjct:   51 MNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 142          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|301114747|ref|XP_002999143.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111237|gb|EEY69289.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-22
Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = 0
Query:   31 LAAFTKRASGRTFA---AAAAEAEDKVVLAKDFKAFSDETT--VNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVG--TFAGADEKKLTEGIEDLE 155
            L  FT R S R      A ++ A+ +V +     A++  TT     + + YFTA WCPPC+ I P++  LS+KY D+ F K+DVD   +  SK+ +R++P F +++ GK     +F+GADE+ L   ++ L 
Sbjct:    2 LKVFTSRTSLRVLRGSRALSSSAQSRVKIIGSDDAYTQITTEGTGRKAIVYFTAKWCPPCKMIGPIYDKLSAKYEDIDFAKLDVDELNDTTSKAGVRSMPTFFYFKDGKFQQSLSFSGADEELLRSNVKQLN 133          
BLAST of EWM28053.1 vs. NCBI_GenBank
Match: gi|831289342|ref|XP_012676111.1| (PREDICTED: thioredoxin-like [Clupea harengus])

HSP 1 Score: 94.3597 bits (233), Expect = 2.977e-22
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   73 VVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGI 151
            VV  FTA+WC PC++I+P F +LS KY DV FLK+DVD  ++ A + +I+ +P FHFY+ GK V  F+G++ +KL E +
Sbjct:   23 VVVDFTATWCGPCQSIAPFFKSLSEKYKDVVFLKVDVDDAQDVAQECDIKCMPTFHFYKNGKKVDDFSGSNREKLEEMV 101          
The following BLAST results are available for this feature:
BLAST of EWM28053.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110395|gb|EWM28053.1|2.687e-112100.00thioredoxin [Nannochloropsis gaditana][more]
gi|1173951996|gb|OQR99758.1|1.925e-2340.91hypothetical protein THRCLA_21795 [Thraustotheca c... [more]
gi|813119405|ref|XP_012196255.1|2.687e-2344.68hypothetical protein SPRG_19369 [Saprolegnia paras... [more]
gi|669164762|ref|XP_008617943.1|2.806e-2344.68hypothetical protein SDRG_13624 [Saprolegnia dicli... [more]
gi|1072229409|gb|OEU14144.1|4.669e-2343.48hypothetical protein FRACYDRAFT_189178 [Fragilario... [more]
gi|1173928854|gb|OQR82287.1|6.253e-2343.16hypothetical protein ACHHYP_16274 [Achlya hypogyna... [more]
gi|1072221246|gb|OEU06051.1|8.841e-2344.57thioredoxin o [Fragilariopsis cylindrus CCMP1102][more]
gi|1072229410|gb|OEU14145.1|1.552e-2243.48hypothetical protein FRACYDRAFT_189178 [Fragilario... [more]
gi|301114747|ref|XP_002999143.1|2.924e-2235.61conserved hypothetical protein [Phytophthora infes... [more]
gi|831289342|ref|XP_012676111.1|2.977e-2249.37PREDICTED: thioredoxin-like [Clupea harengus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2629rna2629Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications