rna2627, rna2627 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2627
Unique Name	rna2627
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3077
Alignment location	CM002459.1:830572..832419 +

Link to JBrowse

Properties


Property Name	Value
Product	40s ribosomal protein s15a
Orig transcript id	gnl\|cribi\|Naga_100044g11.1080.mrna
Orig protein id	gnl\|cribi\|Naga_100044g11.1080
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:830572..832419 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100044g11	gene2512	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2627	rna2627-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28066.1	cds2619	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:830572..832419+
coding sequence from alignment at CM002459.1:830572..832419+

mRNA sequence

>rna2627 ID=rna2627|Name=rna2627|organism=Nannochloropsis gaditana|type=mRNA|length=3077bp
GCGTGTTTTCAACATTCCTCAAAAAAGAGAAGTTTGCAAGAGATGTTTCT
TCCCCCTTGTGGCATTGAATCGCTTTGACAAGTAGAAGGAGGAGCAAACC
AAAGGAGGTGAGCATGGCCCACAGGAGAGAGGGAGGAGGTCGGAATGGTC
CTGAATGTTGCTCGCGGAGGAATCGCAGGAATACGACGCCAGTCGTCATT
CTAAATAAATCAAAACATCCATAAAGGGGATGTGAGTCAGTAAATATGTG
TATTTGTAACCCCCCGCTCACGTTTTTTGTCGCTCGGCACGGACGTTGGG
ACTCGAGAAAGCAGCTTTCTTGCTTCACCCCTGCGAGCAACGGGCTGGTA
ACAGACGGGACACCGTCTTGCCGTCCCCGCATCTCCACTTATGATATTAA
ACATCGACAGGAACAAAGGGCGACTCAAAAGACGTCGATCTCTACTTCAT
CACGCTGGCACCATTGTCAAGCGCCTATCTGCGAGTGGTTTATCCTTCCT
CAAGAAACCTCCTGACACGTCGAAGCAACTTGCTGGTTGAAGGCCGGTGG
CGGGGCGGGGGGGTGAAATAGAAAGACATTTAGGCCAAATGCGAATATTC
TATGGACTTAGCAAGTCCTATGGTGGAGGTTTATGGTTGTTGAACCCCTT
GACACGGATACTGCGATTCCTGATCCGGTGCACAGGGTTGCACACCCTAG
GTCGAGCCCTGCCTTTGGGGCTGCTCCTGGCATTGACCTGTGGCTTACCC
CTAGCATGGGCCTGGAGGAATTTTGTCACACCAAGTAACTGGTGGACAAA
GCGTGTGATTGTGGATACGGAGTCCGGGCCTGTCCAAGGTTTCACTCAAG
ATAAGGTCAGCTTTTATCTCGGAATTCCCTACGCAGCGCCTCCTGTGGGC
GAACTGCGTTTCGCCGCCCCAAGGCCACTGGGTCGGCGATGGGACAAACG
ACATCCCTACGATGCCACCTACTTCCGCGCCGAATGCATGCAAGGAAAGC
TGCACAACGCGGACCGACCCAAAGCTCTCAGTGAAGATTGCCTGTTCTTG
AATGTGTGGGCCCCCTCCACGGCCAGGAAGAAGAAGCCTGTGCCGGTCAT
GGTTTGGCTCTACGGCGGTGCATTTCAACAAGGAGGCTCGTCCAAAGCCG
AGTACTATGGAGAGAACCTGGCTGCGAAGGGTGTGGTCCTCGTGAGCTGT
AATTATCGACTGGGAGCTCTGGGATTCATGGTCTCGGTAGACGACGGCAT
GTACGGGAATTACGGGCTGCAAGACCAGCGTTTTTGCCTGGAATGGGTTC
AGCGGAACATCAAAGGCTTCGGTGGCGACCCAGGCTCTGTGACCCTCTTC
GGAGAGTCTGCTGGAGCCATGTCCGTAGGCCAGCACTTGCTCATGGAGGG
GCAGGGGCGCTTGTTCCACCGCGTCATAATGCAGAGCAACCCCTTCTCGT
ACCATTACCGGTCCTTGACCGTGGCCAACTTCCTGGGCCAAGCCGTCAAG
CGGGGTGTCGACTGCCATGATCTCAAATGCCTCCAGGAGGAGCCGGTGGA
GGAGCTGCTGGAGGTCCAAGACAGCATCCACGGGCTCCCGCGCAGCGTCG
GCGACTTTTTCACTTGGGGACCTGTGATCAAGGAAGGGCCATGGTGGCGG
GCCGCGGAGTCGAGCGGGGGGCGGCAGCGCGATGCGGTCCCGATCACCGT
GCGGCAGCCCTTGAAAGCGCTGGAGTCGCGGGACTTCGTCAACAGGGTGC
CCGTCATCTTGGGGTCCTGCAAGGACGAGGGGCATATGTTCGTGTACAAC
ATCTTCCCCTTTCCCATGCCAAAGTACCTGTACTGGGGCTTCGTCTTCGT
CCTCTTCAGGGAGAGCGCCCCCAAGATTATTCGTCACTACGCGGAAGTGG
TGGAGAAGGAAGTCGCGCGACAGGGCACGAAGCGAATTGACTACCGGCCC
GTCCTCTCCATCATCCTCAACGACTATATGTTCCGGTGTCCGACCTGGCG
GGCGGCCCATCTCTTGCAAGAAAAGAGCGTGGACCCCGCCGCTGCTCCGG
TCTACGTCTTTCAGTTCTCCCATCCTACGCGGGTGCCCGGTTTCCCGGAG
TGCCACGGCCTGTCATGCCACACGTCCGAGCTCCCCTTCGTCTTCAACAA
CCTTGACGTGATTCATAAGCAATACGCCATGGCTTACGAGCACCGAAATG
CCTCTTCAGTCAAAGACCTGATTTCCAACATCCTATGGGGTCTCTTCCTC
AACCTGGACGCGGACGAGCGACTCTCCTCCGTCATGGCCGACTATTGGGC
GGCCTTTGGGAAGACGGGTAACCCAAATCACAAGGGGGCGCCTTTGCACT
GGCGCGAATGGAAGGGCCGACGACGCTACCACCTACAGCAAAATCCGGTG
GATGATGAGGAGTCTTTCGGAGGCAATAGGGATGGAGGAAGGGATGACAC
GGACTTCCTCCGCACCCTCATGGGAGGCACAGCGAGTGCGAGCAACAGAG
ATCGGCAGAGGTATACGGGAGAAAGAAAATTTACAGAGGGTAAAATGGGG
AATGGGAGAAGCCGAGCTCAAAGTAAGCGGAAAAAAGGAGGTACCTCTAC
AACAATCATAGAGCCGCACTACTTGGATCTGAAATGGAAGCCAGAGGTGC
ATTTGGCGACCAGGGATTGCACTTGTGACTTCTGGGATGGCTTTAACTAT
AAGTGGTGAGGCTGAATTCGAAACAAAGAGGCCTAAACATAAGCAGAAGA
TTGACGAACAGACGTGATAGCTTCAGGTGAAACTTTGCGACAAAACCGAG
CTCTAACGCGAAAATGAGAAAAAGCGATGTATCCAGGACACGTGATACCG
GTCTGAACATAAACAAACAAATGTGCAATATAATCTGTTAGAATGATTTT
TAAGGGAAAGGTCTGGGAAAGCGTCAGTTTCCCGATGACAGTTGAATTTC
ACCAAATGTCTTCTTGTCGACCTCATCTGCTTTAAACCTTGCTTTGCGTC
GTGTCTGCATGCTTGTTCTGGAGATTGGCCCTTTGCTTTAAAGATTGGGT
TCACCTTTCAAATGTAATATTTTTGTC

protein sequence of rna2627

>rna2627-protein ID=rna2627-protein|Name=rna2627|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEF
EIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFG
HIVMTTTFGIMDHEEARRRFTGGKLLGFFY

mRNA from alignment at CM002459.1:830572..832419+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2627 ID=rna2627|Name=rna2627|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp|location=Sequence derived from alignment at CM002459.1:830572..832419+ (Nannochloropsis gaditana)
CAGCCGCTGCAATGCGTGTTTGTGTTTGAACGTGCTACTGCGATGCTAGC
CGGATTATTTATGGCAGCCGATGTGGAAATTGCTTGCAGGACAGCCGGGG
AGGCATGATTAAGGAAATACGGCTTGAGGAAGCTGCTTCCAAACTATTTC
CTGTCACTCACTCCTGATGGGACCCTTCAAACGATGTATCTAGTCTTCTC
ATGAAGCAATTGTGTAAAACTCTATCAACAAGGAACTGCGGAAATACCGC
GTTTGGTTCCTTGAAGTCCTGATCATCTTTTCTGCCAGGATGTTGTTCAT
TTtctcacttccccctccaactTTCCACGACAGCCCATCATGGTGCGCAT
GAGTGTGTTGGCCGACGCCCTAAAAACAATCTCAAATGCTGAAGATCGGG
GGAAAAAGCAGGTGCTTATTCGTCCATCATCGAAGGTGATCGTGAAATTT
TTGCAAGTCATGCAGAAGAACGGTACGGACGGCGGACGTGAATTGAGGGG
GATGGTGTTGGAAGACCCTAGAAATGCTTGGAGGACTAATATCGCATGTT
TTCAGAAAGAGAAATGTGTGATGTATGTCTATGTGGCACATAAGCACACG
AAAAGTTGTGCCAAGCGCATGGAATGGTACATCCGCGTCGATGGATGGCT
TCATCAGTAGGAGAGGACTGCCAGAATTTGTTTCCGCAAGCTAACACTCT
GTGCACAGAGCCTAGTGCCTGTTTCAGGACAGCCATGGCGATGACTGTAT
TCAATTTTTATGCTCTGCCAAAGCGACGAGGGACAACACTCACCGCCGGG
GATATTCCAGGAACTGGGCGGCCTTATGTTTCCCCGAAATGACTTCCTTT
CGCGATACCCTGCCATCTGCGACCATCATGTGTTGTGTGCACCTTTCTGG
TTTACCTTTCCAGCATTTTTCTCACATCTTTCCTGCCCTTAACCCTTTGC
CCTTAACCCTTTGTCCCAGGCTACATTGGTGAGTTCGAAATCGTGGACGA
CCATCGCGGCGGGAAGATAGTCATCGACCTGATCGGACGCATCAACAAGG
TGGGAGTGATTTCTCCGCGCTTCGACGTGAAGTACGGCGAGTACGAGAAC
TGGGTGAACAACGTTCTCCCATCCCGTCAGGTAAGCCGGCGGGGCAGATG
TTCTGTCACTGGGGCggtcggaggagaggagtcTAGAACTGGGCCGGTGG
TTTTGGCGGTTCCTGCGTTCTGCGTGCTTTGTATCCGGGCGGGGCGCTGG
GAAAGCACGACATGATGAGCGCAAACGCAAGATTTCTGACACCTCTTGTA
GGAGGCTGCCGGTCATCACACCGCGTGGCCCATGAACGCACAAACGTTAT
GTAACGCCTGAGTCTtgctctcccaccgccccaAGTCCCTTCCCCATGGT
GTCTCGGCAGACAGTTGTGTCCCcgctcaccttcctcccttgctttctcc
cctcGCCATACCCCCCAGTTCGGACACATTGTCATGACCACCACCTTCGG
GATCATGGACCACGAAGAGGCGCGTCGGCGGTTTACGGGCGGGAAGCTGC
TCGGGTTTTTCTATTAGGGTCCGTGGAAAAAAAACCTCGGGCGTTCGTGT
GAAAATGATGGGCCTATTTTGTCGGAGGCGATCGACGTGTGAAAGTAGGA
GACACATCAAAAGCGCCGGCACCGCCTTCCTATATCCTTCTCCTtatccc
tctcctcctcccttatgTCCTCTCTGCCGTTCCTATCCGAGCGACCGAGA
CAGCATTAACCCTTGGCCAAAGAGAGAACGGTGTTGTCAAAGAATCAAGG
ATGCAAAAACGCCAAAAAAATCCCAAGCTCGCCTGTGCACCAAACGCC

Coding sequence (CDS) from alignment at CM002459.1:830572..832419+

>rna2627 ID=rna2627|Name=rna2627|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at CM002459.1:830572..832419+ (Nannochloropsis gaditana)
ATGGTGCGCATGAGTGTGTTGGCCGACGCCCTAAAAACAATCTCAAATGC
TGAAGATCGGGGGAAAAAGCAGGTGCTTATTCGTCCATCATCGAAGGTGA
TCGTGAAATTTTTGCAAGTCATGCAGAAGAACGGCTACATTGGTGAGTTC
GAAATCGTGGACGACCATCGCGGCGGGAAGATAGTCATCGACCTGATCGG
ACGCATCAACAAGGTGGGAGTGATTTCTCCGCGCTTCGACGTGAAGTACG
GCGAGTACGAGAACTGGGTGAACAACGTTCTCCCATCCCGTCAGTTCGGA
CACATTGTCATGACCACCACCTTCGGGATCATGGACCACGAAGAGGCGCG
TCGGCGGTTTACGGGCGGGAAGCTGCTCGGGTTTTTCTATTAGATGGTGC
GCATGAGTGTGTTGGCCGACGCCCTAAAAACAATCTCAAATGCTGAAGAT
CGGGGGAAAAAGCAGGTGCTTATTCGTCCATCATCGAAGGTGATCGTGAA
ATTTTTGCAAGTCATGCAGAAGAACGGCTACATTGGTGAGTTCGAAATCG
TGGACGACCATCGCGGCGGGAAGATAGTCATCGACCTGATCGGACGCATC
AACAAGGTGGGAGTGATTTCTCCGCGCTTCGACGTGAAGTACGGCGAGTA
CGAGAACTGGGTGAACAACGTTCTCCCATCCCGTCAGTTCGGACACATTG
TCATGACCACCACCTTCGGGATCATGGACCACGAAGAGGCGCGTCGGCGG
TTTACGGGCGGGAAGCTGCTCGGGTTTTTCTATTAGATGGTGCGCATGAG
TGTGTTGGCCGACGCCCTAAAAACAATCTCAAATGCTGAAGATCGGGGGA
AAAAGCAGGTGCTTATTCGTCCATCATCGAAGGTGATCGTGAAATTTTTG
CAAGTCATGCAGAAGAACGGCTACATTGGTGAGTTCGAAATCGTGGACGA
CCATCGCGGCGGGAAGATAGTCATCGACCTGATCGGACGCATCAACAAGG
TGGGAGTGATTTCTCCGCGCTTCGACGTGAAGTACGGCGAGTACGAGAAC
TGGGTGAACAACGTTCTCCCATCCCGTCAGTTCGGACACATTGTCATGAC
CACCACCTTCGGGATCATGGACCACGAAGAGGCGCGTCGGCGGTTTACGG
GCGGGAAGCTGCTCGGGTTTTTCTATTAG

Synonyms

Publications