EWM28066.1, cds2619 (CDS) Nannochloropsis gaditana

Overview
NameEWM28066.1
Unique Namecds2619
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:830911..831043 +
Alignment locationCM002459.1:831541..831701 +
Alignment locationCM002459.1:832040..832138 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28066.1
Product40s ribosomal protein s15a
Orig transcript idgnl|cribi|Naga_100044g11.1080.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:830911..831043 +
CM002459.1supercontigCM002459.1:831541..831701 +
CM002459.1supercontigCM002459.1:832040..832138 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
Homology
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|585110408|gb|EWM28066.1| (40s ribosomal protein s15a [Nannochloropsis gaditana])

HSP 1 Score: 265.388 bits (677), Expect = 5.513e-90
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY
Sbjct:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|301095995|ref|XP_002897096.1| (40S ribosomal protein S15a [Phytophthora infestans T30-4] >gi|675213337|ref|XP_008915553.1| 40S ribosomal protein S15a [Phytophthora parasitica INRA-310] >gi|695403227|ref|XP_009523228.1| hypothetical protein PHYSODRAFT_285440 [Phytophthora sojae] >gi|262107415|gb|EEY65467.1| 40S ribosomal protein S15a [Phytophthora infestans T30-4] >gi|348680695|gb|EGZ20511.1| hypothetical protein PHYSODRAFT_285440 [Phytophthora sojae] >gi|567945193|gb|ETK71004.1| 40S ribosomal protein S15a [Phytophthora parasitica] >gi|567973793|gb|ETL24447.1| 40S ribosomal protein S15a [Phytophthora parasitica] >gi|568003338|gb|ETL77688.1| 40S ribosomal protein S15a [Phytophthora parasitica] >gi|568033211|gb|ETM30932.1| 40S ribosomal protein S15a [Phytophthora parasitica] >gi|568084202|gb|ETM99140.1| 40S ribosomal protein S15a [Phytophthora parasitica INRA-310] >gi|570311413|gb|ETO59361.1| 40S ribosomal protein S15a [Phytophthora parasitica P1976] >gi|570935139|gb|ETP00396.1| 40S ribosomal protein S15a [Phytophthora parasitica CJ01A1] >gi|570965431|gb|ETP28550.1| 40S ribosomal protein S15a [Phytophthora parasitica P10297] >gi|970629073|gb|KUF76465.1| 40S ribosomal protein S15a [Phytophthora nicotianae] >gi|970657647|gb|KUF95503.1| hypothetical protein AM588_10010378 [Phytophthora nicotianae])

HSP 1 Score: 228.024 bits (580), Expect = 4.373e-75
Identity = 106/130 (81.54%), Postives = 119/130 (91.54%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKT+ NAE RGK+QVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHR GKIV++L GRINK GVISPRFDVK  +YE W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRGKRQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELKGRINKCGVISPRFDVKLADYEKWINNLLPSRQFGHIVVSTTYGIMDHHEARRKHTGGKIIGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|566007695|gb|ETI30606.1| (40S ribosomal protein S15a [Phytophthora parasitica P1569])

HSP 1 Score: 226.483 bits (576), Expect = 1.821e-74
Identity = 105/130 (80.77%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKT+ NAE R K+QVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHR GKIV++L GRINK GVISPRFDVK  +YE W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRSKRQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELKGRINKCGVISPRFDVKLADYEKWINNLLPSRQFGHIVVSTTYGIMDHHEARRKHTGGKIIGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|676384487|ref|XP_009035522.1| (hypothetical protein AURANDRAFT_24204 [Aureococcus anophagefferens] >gi|323453584|gb|EGB09455.1| hypothetical protein AURANDRAFT_24204 [Aureococcus anophagefferens])

HSP 1 Score: 225.328 bits (573), Expect = 4.285e-74
Identity = 105/130 (80.77%), Postives = 119/130 (91.54%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LK+ISNAE RGK+QVLIRP SKVIVKFLQ MQK+GYIGEFEIVDDHR GKIVI+L GRINK GVISPRFDV+  + E+W+NN+LPSRQFGH+V++TTFGIMDHEEARR+ TGGK+LGFFY
Sbjct:    1 MVRMSVLADCLKSISNAEKRGKRQVLIRPCSKVIVKFLQTMQKHGYIGEFEIVDDHRSGKIVIELTGRINKCGVISPRFDVEIKDMESWINNLLPSRQFGHLVLSTTFGIMDHEEARRKRTGGKILGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|698822373|ref|XP_009844215.1| (40S ribosomal protein S15a [Aphanomyces astaci] >gi|574100735|gb|ETV66309.1| 40S ribosomal protein S15a [Aphanomyces astaci])

HSP 1 Score: 224.172 bits (570), Expect = 1.163e-73
Identity = 104/130 (80.00%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKTI NAE RGK+QVL+RPSSKVIVKFLQ MQKNGYIGEFEI+DDHRGGKIVI+L GRINK GVISPRFDVK  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIIDDHRGGKIVIELRGRINKCGVISPRFDVKQSDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKATGGKIIGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|1173940559|gb|OQR89940.1| (40S ribosomal protein S15a [Achlya hypogyna])

HSP 1 Score: 223.787 bits (569), Expect = 2.221e-73
Identity = 104/130 (80.00%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKTI NAE RGK+QVLIRPSSKVIVKFLQ MQKNGYIGEFEIVDDHR GKIV++L GRINK GVISPRFD+K  + E W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLIRPSSKVIVKFLQCMQKNGYIGEFEIVDDHRAGKIVVELRGRINKCGVISPRFDIKLQDMEKWINNLLPSRQFGHIVLSTTYGIMDHNEARRKHTGGKVIGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|673052657|ref|XP_008880289.1| (40S ribosomal protein S15a [Aphanomyces invadans] >gi|574464039|gb|ETV91092.1| 40S ribosomal protein S15a [Aphanomyces invadans])

HSP 1 Score: 224.557 bits (571), Expect = 2.283e-73
Identity = 104/130 (80.00%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKTI NAE RGK+QVL+RPSSKVIVKFLQ MQKNGYIGEFEIVDDHRGGKIV++L GRINK GVISPRFDVK  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:   27 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDVKQHDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKQTGGKIIGFFY 156
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|369793852|gb|AEX20387.1| (40S ribosomal protein S15a [Pyropia haitanensis])

HSP 1 Score: 223.402 bits (568), Expect = 2.923e-73
Identity = 101/130 (77.69%), Postives = 121/130 (93.08%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVL DALKT+SNAE RGK+QV++RPSSKV++KFLQ+MQK+GYIGEFE VDDHR GKIV++LIGR+NK GVISPRFDVK G+ ENWVNN+LPSRQFG+I++TT++GIMDHEEAR + TGGK+LGFFY
Sbjct:    1 MVRMSVLGDALKTLSNAEKRGKRQVMLRPSSKVVIKFLQIMQKHGYIGEFEYVDDHRAGKIVVNLIGRLNKCGVISPRFDVKVGQVENWVNNLLPSRQFGYIMLTTSYGIMDHEEARAKHTGGKILGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|1173958989|gb|OQS05272.1| (40S ribosomal protein S15a [Thraustotheca clavata])

HSP 1 Score: 223.016 bits (567), Expect = 3.803e-73
Identity = 103/130 (79.23%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKT+ NAE RGK+QVLIRPSSKVIVKFLQ MQKNGYIGEFEIVDDHR GKIV++L GRINK GVISPRFD+K  + E W+NN+LPSRQFGHIV++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRGKRQVLIRPSSKVIVKFLQCMQKNGYIGEFEIVDDHRAGKIVVELRGRINKCGVISPRFDIKLNDMEKWINNLLPSRQFGHIVLSTTYGIMDHNEARRKHTGGKVIGFFY 130
[Close]
BLAST of EWM28066.1 vs. NCBI_GenBank
Match: gi|673052655|ref|XP_008880288.1| (40S ribosomal protein S15a, variant [Aphanomyces invadans] >gi|574464040|gb|ETV91093.1| 40S ribosomal protein S15a, variant [Aphanomyces invadans])

HSP 1 Score: 223.016 bits (567), Expect = 4.533e-73
Identity = 104/130 (80.00%), Postives = 118/130 (90.77%), Query Frame = 0 
Query:    1 MVRMSVLADALKTISNAEDRGKKQVLIRPSSKVIVKFLQVMQKNGYIGEFEIVDDHRGGKIVIDLIGRINKVGVISPRFDVKYGEYENWVNNVLPSRQFGHIVMTTTFGIMDHEEARRRFTGGKLLGFFY 130
            MVRMSVLAD LKTI NAE RGK+QVL+RPSSKVIVKFLQ MQKNGYIGEFEIVDDHRGGKIV++L GRINK GVISPRFDVK  + E W+NN+LPSRQFGH+V++TT+GIMDH EARR+ TGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDVKQHDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKQTGGKIIGFFY 130
The following BLAST results are available for this feature:
BLAST of EWM28066.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110408|gb|EWM28066.1|5.513e-90100.0040s ribosomal protein s15a [Nannochloropsis gadita... [more]
gi|301095995|ref|XP_002897096.1|4.373e-7581.5440S ribosomal protein S15a [Phytophthora infestans... [more]
gi|566007695|gb|ETI30606.1|1.821e-7480.7740S ribosomal protein S15a [Phytophthora parasitic... [more]
gi|676384487|ref|XP_009035522.1|4.285e-7480.77hypothetical protein AURANDRAFT_24204 [Aureococcus... [more]
gi|698822373|ref|XP_009844215.1|1.163e-7380.0040S ribosomal protein S15a [Aphanomyces astaci] >g... [more]
gi|1173940559|gb|OQR89940.1|2.221e-7380.0040S ribosomal protein S15a [Achlya hypogyna][more]
gi|673052657|ref|XP_008880289.1|2.283e-7380.0040S ribosomal protein S15a [Aphanomyces invadans] ... [more]
gi|369793852|gb|AEX20387.1|2.923e-7377.6940S ribosomal protein S15a [Pyropia haitanensis][more]
gi|1173958989|gb|OQS05272.1|3.803e-7379.2340S ribosomal protein S15a [Thraustotheca clavata][more]
gi|673052655|ref|XP_008880288.1|4.533e-7380.0040S ribosomal protein S15a, variant [Aphanomyces i... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2627rna2627Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications