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Properties
| Property Name | Value |
|---|
| Product | tata-box binding protein |
| Orig transcript id | gnl|cribi|Naga_100044g16.1061.mrna |
| Orig protein id | gnl|cribi|Naga_100044g16.1061 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:820305..821532 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2622 ID=rna2622|Name=rna2622|organism=Nannochloropsis gaditana|type=mRNA|length=2348bp
GAACGCGTGCCGGTCACGACCATTTTGCCCGATGAGAAGATGAGAGCGGC
CGACTTAGGCTCTTTGATGTGCATGATGACAGCAGGGAAACGTCGAGGAT
TGTACTCCGCATTCCTCGCACCCAGGGCAATACTCTTGAGATCAGGCTTG
CAATCTAGATTCACGGTCGCCACCACGTTGGTCAGCTTGATGGAAGCCAC
GAAGCGGAGGGTTTCAGCGCTTGGACCGCCCGTGCCGCCCTCCATATGGC
CAGCGGGGGGCCCTGCATTGCTGCGCATTATTGGACTCAACCCGCCACCA
CCACCCATCAAAGGGCTCGCCATGATCTTTTACCCGCCTTTTGTGGCTTT
TTCTAGCTTTAGACGTAATGGATCAGCCTTCGTTATTGGTGCAAATGCGA
AATCCAAGTGTTCAGAGGGAGGGGATGTTGCCGGTCGATGACTGATGGAC
AAGACGACAACGTGTAAAAATGACGGTGCCTCTACAAAGCGGCCGTGATC
TGTGTTGGTGGTAAAGCATTCTGATGTGAGCAACGAAGAGCATCAGGACG
CAGCCTACTGTCTCCTATCACGAGGAGGCATGTGACTCGCTCCTTTTGTT
CACTCTCCTAGAGTCTGTCATGATCCTTGCTTACCCCTGGTCGTCTAGCC
GTTTCTCACGCAAGTTTTTCCTCCAAAGGCCATCTCCTTGCGTGCTCATG
ACAAACAATTATATACAACATTGTGAAATGTGTGCTCTTGAATGCATAAC
TGTGGCCACGGTCCCAATGCTGTCACATTTTGCCAGGCCTGCGTCTCCTC
ACCTCCCCATTCCCCCCTTATTCTTCGCTGCCGTCTCAAAGGACGCCTCT
TGTTTTCCTCTTTCCCTTCATCCATTGCGTTAGAGGTCGGGACAGACGTC
TATACATCAACTCCTCGCATCGCCACGTCTAGGTGAAAACCTGCAGCAGC
CATGGCGTTGGACGTGAAAGAAAAGAACTTGATAAAATTCATAGCCAAGC
GTCTTATTCCCATTTTACTCATTTTCTGCTCTTTCGCCTCTTATATGGAG
CTATGGGCCCAACCAGTGCGTCTACTAGGCTTTTGTTTGGTGGCTATTTG
GATCATCAAGATAACGAGGCGTGTTATTTTGTTTTTACGGGTGAAGCTCT
TCCCCCGCGACCCGCTTTCTTACGGGAAGTGGGCGATTGTCACGGGTGCG
ACGGCTGGTATCGGGGAGGCCTTTGCATACGAGCTTGCAGCATGCGGCAT
GAATGTCATTATCATCTCGCGGTCTCTGAACAAACTAGAGGAGGTGAAGA
AAGGCATTCTGAAAGAGAGCCCCGCAGCGGAGATAAGGTGCATGGCGTAC
GACTACACCGACCGCGAGGGGGCGGAGGCCTTTTTTATGAAGCTGAGCGA
GACTTGTAAACACCTGGAGGGTGGGCTTGGCATCCTTGTGAACAATGTCG
GCATGGTTAATGCGATACCGGAGTACGTGCATCTCTTGGACGATCCCACC
ACCTACGGCATTTTGCAAGTGAATGTCGAGGGCACAGTGCGAACCACACG
TGCCATCGCTCCGCTGCTCATCGACCAACGCAAAGGCGCCATTATTAATG
TCTCGTCAGGGTCCGGTAACCACCCCACGCCCATGATCTCTTGCTACGCA
TCTACGAAATCGTTCATCACTCAGTTCTCCCAATGCCTCTCCCACGAGCT
GCGCGAGTTCGGCGTGGACGTCCTGGTGGTTACCCCCTACTACGTGATAT
CCAATCAATTCCGCCGAAAAAAGGCGACCTACATCGCCCCGACAGCTCAA
AGGATGGTGCAAGACACGTTGCCCATCCTGGGGTATTGCGATGTAGCCTT
CCCGTACTGGTTCCATGCCCTCTGCGGATTCTTTGTAGGATTGTACTGGG
ATGTGGGAGGTTCCGTTATGGCAGCAATGAGGAGAAATCGTGCGCGAATA
TTGGAGGCGGCTGCGAAGAAGGAGGGCAAGAAGGAGTAGTTTAGGGATGG
CGTGAAGAAAAGTAAAATGGGTAGGGGAGGTAGTGAGGGGACCGAGTAGG
CCATGAAAGAGCGGCGCATGTATAGTTTAGCGAGTGGACAAGGATGTACT
ACAACGCTGAGAAGCATGACGGATGGATAATGGGGCGCCCTCGAGGAACA
CAGTAGACGACACTGAGTTGACAGTCGAAAGGGGGGGGTGCCTCAGTCCG
ATATGGCGTGGAGCAGATTACGGTGGGTCAAAGAGGACAGACACCCTTCC
TTACATTGTATGCGGCAGCTCTATATGCGTGTCCATCAGCAAAAGTGAAA
GCTCACATAAAAATACCACCTAATAAAATGATTTGATCACCTGAGACA back to topprotein sequence of rna2622 >rna2622-protein ID=rna2622-protein|Name=rna2622|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNV
VATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGK
MVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPI
RLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTR
RDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR back to topmRNA from alignment at CM002459.1:820305..821532+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2622 ID=rna2622|Name=rna2622|organism=Nannochloropsis gaditana|type=mRNA|length=1228bp|location=Sequence derived from alignment at CM002459.1:820305..821532+ (Nannochloropsis gaditana)
TAGGCTGCGTCCTGATGCTCTTCGTTGCTCACATCAGAATGCTTTACCAC
CAACACAGATCACGGCCGCTTTGTAGAGGCACCGTCATTTTTACACGTTG
TCGTCTTGTCCATCAGTCATCGACCGGCaacatcccctccctctgaaCAC
TTGGATTTCGCATTTGCACCAATAACGAAGGCTGATCCATTACGTCTAAA
GCTAGAAAAAGCCACAAAAGGCGGGTAAAAGATCATGGCGAGCCCTTTGa
tgggtggtggtggcgggttGAGTCCAATAATGCGCAGCAATGCAGGGCCC
CCCGCTGGCCATATGGAGGGCGGCACGGGCGGTCCAAGCGCTGAAACCCT
CCGCTTCGTGGCTTCCATCAAGCTGACCAACGTGGTGGCGACCGTGAATC
TAGATTGCAAGCCTGATCTCAAGAGTATTGCCCTGGGTGCGAGGAATGCG
GAGTACAATCCTCGACGTTTCCCTGCTGTCATCATGCACATCAAAGAGCC
TAAGTCGGCCGCTCTCATCTTCTCATCGGGCAAAATGGTCGTGACCGGCA
CGCGTTCGGAGACAGATTCCTTGCAAGCGGCGCACAAGTATACAACAATC
ATGAAACGTCTCAAATGCGCTGCGAACTGCACCGAGTTTCGTGTCCAAAA
CATGACGGCGTCGTGTGACATCGGCTTCCCCATCCGCCTGGAAGGGCTGG
TAATGGATCAGCCCCGCTTTTGTTCTTACGAGCCAGAGCTTTTCCCTGGC
CTTGTGTACCGTATGTATAATCCCAAAATTGTTCTTTTGATTTTCGTGTC
CGGCCGGATCATTATCACGGGCGCAAAGACCAGACGAGACATGGACGCGG
CCTTGGAAAAGCTCCACCCCATCCTACTAGAGTACCGGAAAATGCCCGCG
GCCCCATCATCGGTCCCTGTGAAAGAGGGGGCCATGTCggcgggcggtgg
aggaagagggggggtgggaaagcgaAAACGATGAACAAGGGGAAACGTGC
GCAGGGGTGCCTTGACAGGGGCCTGAAAGGGCGATCATGCGCGAGAATGT
GATTTAAACAAATATAAAGATAGCACCTTGATAAAGAGCGAATGACTGTA
GTAGATGGTGAAACGAGGGGCAAAAAGTGTCCGAGCCTGCGGGATAGGTG
AAATTTCAACAAAGATAATGTCAACAAAGCGAGGTGCGAGGCTTTTATCC
GTCAGAAAGAATATATGCACTACATAGT back to topCoding sequence (CDS) from alignment at CM002459.1:820305..821532+ >rna2622 ID=rna2622|Name=rna2622|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002459.1:820305..821532+ (Nannochloropsis gaditana)
ATGGCGAGCCCTTTGatgggtggtggtggcgggttGAGTCCAATAATGCG
CAGCAATGCAGGGCCCCCCGCTGGCCATATGGAGGGCGGCACGGGCGGTC
CAAGCGCTGAAACCCTCCGCTTCGTGGCTTCCATCAAGCTGACCAACGTG
GTGGCGACCGTGAATCTAGATTGCAAGCCTGATCTCAAGAGTATTGCCCT
GGGTGCGAGGAATGCGGAGTACAATCCTCGACGTTTCCCTGCTGTCATCA
TGCACATCAAAGAGCCTAAGTCGGCCGCTCTCATCTTCTCATCGGGCAAA
ATGGTCGTGACCGGCACGCGTTCGGAGACAGATTCCTTGCAAGCGGCGCA
CAAGTATACAACAATCATGAAACGTCTCAAATGCGCTGCGAACTGCACCG
AGTTTCGTGTCCAAAACATGACGGCGTCGTGTGACATCGGCTTCCCCATC
CGCCTGGAAGGGCTGGTAATGGATCAGCCCCGCTTTTGTTCTTACGAGCC
AGAGCTTTTCCCTGGCCTTGTGTACCGTATGTATAATCCCAAAATTGTTC
TTTTGATTTTCGTGTCCGGCCGGATCATTATCACGGGCGCAAAGACCAGA
CGAGACATGGACGCGGCCTTGGAAAAGCTCCACCCCATCCTACTAGAGTA
CCGGAAAATGCCCGCGGCCCCATCATCGGTCCCTGTGAAAGAGGGGGCCA
TGTCggcgggcggtggaggaagagggggggtgggaaagcgaAAACGATGA back to top
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