EWM28047.1, cds2614 (CDS) Nannochloropsis gaditana

Overview
NameEWM28047.1
Unique Namecds2614
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:820539..821288 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28047.1
Producttata-box binding protein
Orig transcript idgnl|cribi|Naga_100044g16.1061.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:820539..821288 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006352DNA-templated transcription, initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding
GO:0005515protein binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR030491TBP_CS
IPR012295Beta2_adaptin/TBP_C_dom
IPR000814TBP
Homology
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|585110389|gb|EWM28047.1| (tata-box binding protein [Nannochloropsis gaditana])

HSP 1 Score: 508.064 bits (1307), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR 249
            MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR
Sbjct:    1 MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR 249          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1026970816|ref|XP_016609523.1| (TATA-box-binding protein [Spizellomyces punctatus DAOM BR117] >gi|907095830|gb|KND01484.1| TATA-box-binding protein [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 239.195 bits (609), Expect = 1.521e-76
Identity = 111/173 (64.16%), Postives = 138/173 (79.77%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE  S  AA KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL ++   FCSYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++ AA E + P+L E+RK
Sbjct:   28 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEEMSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLALNHGSFCSYEPELFPGLIYRMLRPKIVLLIFVSGKIVLTGAKVRDEIYAAFENIFPVLTEFRK 200          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|575520515|ref|XP_006689528.1| (TBP-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [[Candida] tenuis ATCC 10573])

HSP 1 Score: 240.35 bits (612), Expect = 1.925e-76
Identity = 111/173 (64.16%), Postives = 137/173 (79.19%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDCK DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK
Sbjct:   64 LQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 236          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|146415198|ref|XP_001483569.1| (TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260] >gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260])

HSP 1 Score: 240.35 bits (612), Expect = 2.169e-76
Identity = 116/203 (57.14%), Postives = 145/203 (71.43%), Query Frame = 0
Query:   17 RSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            RS+   P  H + G       TL+        N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSGRI++TGAK R ++  A E ++P+L E+RK
Sbjct:   45 RSDVVEPNQHQDDGATSGIVPTLQ--------NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEIYDAFEAIYPVLSEFRK 239          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|50547559|ref|XP_501249.1| (YALI0B23056p [Yarrowia lipolytica CLIB122] >gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122] >gi|1078654988|gb|AOW02103.1| hypothetical protein YALI1_B29977g [Yarrowia lipolytica] >gi|1093604419|emb|SEI30492.1| YALIA101S01e00562g1_1 [Yarrowia lipolytica])

HSP 1 Score: 239.58 bits (610), Expect = 2.344e-76
Identity = 111/173 (64.16%), Postives = 137/173 (79.19%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG RSE DS  A+ KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK
Sbjct:   54 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGARSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLNEFRK 226          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|936524446|emb|CDO57818.1| (similar to Saccharomyces cerevisiae YER148W SPT15 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters [Geotrichum candidum])

HSP 1 Score: 238.81 bits (608), Expect = 3.001e-76
Identity = 110/173 (63.58%), Postives = 137/173 (79.19%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK
Sbjct:   34 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 206          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1003737924|gb|KXX74707.1| (TATA-box-binding protein [Madurella mycetomatis])

HSP 1 Score: 240.35 bits (612), Expect = 3.681e-76
Identity = 121/212 (57.08%), Postives = 151/212 (71.23%), Query Frame = 0
Query:    9 GGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKM 220
            G G++P     A P A    GG  GPS  T        L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L   A  T+F++QN+  SCDI FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++  A E ++P+L ++RK+
Sbjct:   55 GTGVTP-----ATPAATPGAGGNTGPSGITP------TLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 255          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|552927686|gb|ESA11578.1| (hypothetical protein GLOINDRAFT_79885, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 237.269 bits (604), Expect = 3.959e-76
Identity = 109/171 (63.74%), Postives = 137/171 (80.12%), Query Frame = 0
Query:   49 NVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L  AA  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R+++  A E ++P+L E+RK
Sbjct:    2 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRQEIYDAFESIYPVLTEFRK 172          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|595492044|gb|EXX75401.1| (Spt15p [Rhizophagus irregularis DAOM 197198w] >gi|595492048|gb|EXX75405.1| Spt15p [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 239.58 bits (610), Expect = 4.649e-76
Identity = 110/173 (63.58%), Postives = 138/173 (79.77%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L  AA  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R+++  A E ++P+L E+RK
Sbjct:   71 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRQEIYDAFESIYPVLTEFRK 243          
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1147418697|ref|XP_020075917.1| (TBP-domain-containing protein [Hyphopichia burtonii NRRL Y-1933] >gi|1064976788|gb|ODV66850.1| TBP-domain-containing protein [Hyphopichia burtonii NRRL Y-1933])

HSP 1 Score: 239.965 bits (611), Expect = 5.223e-76
Identity = 110/173 (63.58%), Postives = 137/173 (79.19%), Query Frame = 0
Query:   47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219
            L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS  A+ KY  I+++L   A  T+F++QN+  SCD+ FPIRLEGL      F SYEPELFPGL+YRM  PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK
Sbjct:   80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFESIYPVLSEFRK 252          
The following BLAST results are available for this feature:
BLAST of EWM28047.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110389|gb|EWM28047.1|0.000e+0100.00tata-box binding protein [Nannochloropsis gaditana... [more]
gi|1026970816|ref|XP_016609523.1|1.521e-7664.16TATA-box-binding protein [Spizellomyces punctatus ... [more]
gi|575520515|ref|XP_006689528.1|1.925e-7664.16TBP-domain-containing protein [[Candida] tenuis AT... [more]
gi|146415198|ref|XP_001483569.1|2.169e-7657.14TATA-box binding protein [Meyerozyma guilliermondi... [more]
gi|50547559|ref|XP_501249.1|2.344e-7664.16YALI0B23056p [Yarrowia lipolytica CLIB122] >gi|496... [more]
gi|936524446|emb|CDO57818.1|3.001e-7663.58similar to Saccharomyces cerevisiae YER148W SPT15 ... [more]
gi|1003737924|gb|KXX74707.1|3.681e-7657.08TATA-box-binding protein [Madurella mycetomatis][more]
gi|552927686|gb|ESA11578.1|3.959e-7663.74hypothetical protein GLOINDRAFT_79885, partial [Rh... [more]
gi|595492044|gb|EXX75401.1|4.649e-7663.58Spt15p [Rhizophagus irregularis DAOM 197198w] >gi|... [more]
gi|1147418697|ref|XP_020075917.1|5.223e-7663.58TBP-domain-containing protein [Hyphopichia burtoni... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2622rna2622Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications