EWM28047.1, cds2614 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|585110389|gb|EWM28047.1| (tata-box binding protein [Nannochloropsis gaditana]) HSP 1 Score: 508.064 bits (1307), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 Query: 1 MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR 249 MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR Sbjct: 1 MASPLMGGGGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGKRKR 249
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1026970816|ref|XP_016609523.1| (TATA-box-binding protein [Spizellomyces punctatus DAOM BR117] >gi|907095830|gb|KND01484.1| TATA-box-binding protein [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 239.195 bits (609), Expect = 1.521e-76 Identity = 111/173 (64.16%), Postives = 138/173 (79.77%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE S AA KY I+++L A T+F++QN+ SCD+ FPIRLEGL ++ FCSYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ AA E + P+L E+RK Sbjct: 28 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEEMSKLAARKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIRLEGLALNHGSFCSYEPELFPGLIYRMLRPKIVLLIFVSGKIVLTGAKVRDEIYAAFENIFPVLTEFRK 200
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|575520515|ref|XP_006689528.1| (TBP-domain-containing protein [[Candida] tenuis ATCC 10573] >gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [[Candida] tenuis ATCC 10573]) HSP 1 Score: 240.35 bits (612), Expect = 1.925e-76 Identity = 111/173 (64.16%), Postives = 137/173 (79.19%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDCK DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L A T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK Sbjct: 64 LQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 236
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|146415198|ref|XP_001483569.1| (TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260] >gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]) HSP 1 Score: 240.35 bits (612), Expect = 2.169e-76 Identity = 116/203 (57.14%), Postives = 145/203 (71.43%), Query Frame = 0 Query: 17 RSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 RS+ P H + G TL+ N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L A T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSGRI++TGAK R ++ A E ++P+L E+RK Sbjct: 45 RSDVVEPNQHQDDGATSGIVPTLQ--------NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGRIVLTGAKQREEIYDAFEAIYPVLSEFRK 239
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|50547559|ref|XP_501249.1| (YALI0B23056p [Yarrowia lipolytica CLIB122] >gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122] >gi|1078654988|gb|AOW02103.1| hypothetical protein YALI1_B29977g [Yarrowia lipolytica] >gi|1093604419|emb|SEI30492.1| YALIA101S01e00562g1_1 [Yarrowia lipolytica]) HSP 1 Score: 239.58 bits (610), Expect = 2.344e-76 Identity = 111/173 (64.16%), Postives = 137/173 (79.19%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG RSE DS A+ KY I+++L A T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK Sbjct: 54 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGARSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLNEFRK 226
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|936524446|emb|CDO57818.1| (similar to Saccharomyces cerevisiae YER148W SPT15 TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters [Geotrichum candidum]) HSP 1 Score: 238.81 bits (608), Expect = 3.001e-76 Identity = 110/173 (63.58%), Postives = 137/173 (79.19%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L A T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK Sbjct: 34 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFEAIYPVLSEFRK 206
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1003737924|gb|KXX74707.1| (TATA-box-binding protein [Madurella mycetomatis]) HSP 1 Score: 240.35 bits (612), Expect = 3.681e-76 Identity = 121/212 (57.08%), Postives = 151/212 (71.23%), Query Frame = 0 Query: 9 GGGLSPIMRSNAGPPAGHMEGGTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKM 220 G G++P A P A GG GPS T L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L A T+F++QN+ SCDI FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ A E ++P+L ++RK+ Sbjct: 55 GTGVTP-----ATPAATPGAGGNTGPSGITP------TLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 255
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|552927686|gb|ESA11578.1| (hypothetical protein GLOINDRAFT_79885, partial [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 237.269 bits (604), Expect = 3.959e-76 Identity = 109/171 (63.74%), Postives = 137/171 (80.12%), Query Frame = 0 Query: 49 NVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L AA T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R+++ A E ++P+L E+RK Sbjct: 2 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRQEIYDAFESIYPVLTEFRK 172
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|595492044|gb|EXX75401.1| (Spt15p [Rhizophagus irregularis DAOM 197198w] >gi|595492048|gb|EXX75405.1| Spt15p [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 239.58 bits (610), Expect = 4.649e-76 Identity = 110/173 (63.58%), Postives = 138/173 (79.77%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L AA T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R+++ A E ++P+L E+RK Sbjct: 71 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRQEIYDAFESIYPVLTEFRK 243
BLAST of EWM28047.1 vs. NCBI_GenBank
Match: gi|1147418697|ref|XP_020075917.1| (TBP-domain-containing protein [Hyphopichia burtonii NRRL Y-1933] >gi|1064976788|gb|ODV66850.1| TBP-domain-containing protein [Hyphopichia burtonii NRRL Y-1933]) HSP 1 Score: 239.965 bits (611), Expect = 5.223e-76 Identity = 110/173 (63.58%), Postives = 137/173 (79.19%), Query Frame = 0 Query: 47 LTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRK 219 L N+VATVNLDC+ DLK+IAL ARNAEYNP+RF AVIM I+EPK+ ALIF+SGKMVVTG +SE DS A+ KY I+++L A T+F++QN+ SCD+ FPIRLEGL F SYEPELFPGL+YRM PKIVLLIFVSG+I++TGAK R ++ AA E ++P+L E+RK Sbjct: 80 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYAAFESIYPVLSEFRK 252 The following BLAST results are available for this feature:
BLAST of EWM28047.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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