rna2618, rna2618 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2618
Unique Name	rna2618
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1531
Alignment location	CM002459.1:808547..810361 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100044g22.1086.mrna
Orig protein id	gnl\|cribi\|Naga_100044g22.1086
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:808547..810361 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100044g22	gene2503	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2618	rna2618-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28072.1	cds2610	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:808547..810361-
coding sequence from alignment at CM002459.1:808547..810361-

mRNA sequence

>rna2618 ID=rna2618|Name=rna2618|organism=Nannochloropsis gaditana|type=mRNA|length=1531bp
CCCAACTGCAGTCATACACATAAATGCCCTCCAGCGTTTCACCGTAGTCC
AGGCGGAAAAAAAATCGGTATCGAATATATTGGTTGTGTGTGCGCCTTGA
CAGAATGGCTGAAGACGATATATCAGGGACCAGAGTTAACGCCGTGGCCT
GATGTTCAGCCAAAAAAATGACACGACCCTCGGAGAAATTAAGTATCTTA
CGTCTTATACGGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAATACC
TCGGTTAAAAGCAAGTACGGCACCAACAAGGAGACGAATGAGATTAACGT
CTTGGGTATTGACCCTGGGTTTCCTACTCGGACATGCATCCGCGTTCGTT
CGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATCCCTT
CGACAATAAATTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACCTATT
ACCGACGTTTATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAACGGAG
AATGGTCTAATTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCACCGG
TTTGCCTCTTGTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCGGGAT
CTTTGCATGCTGTGACAGGTCCCGACCACCTTGCGGCACTGCTACCTCGG
TGTATTGGCAAGCGATGGTACCAAGCAATGCGGATCGGCGCCGTCTGGGG
CCTGGGACACGGCATCAGTGCAATCATCATGGGAATGGTCGCGTTTTTCC
TCAAAGGCCGGCTGTCAACCTACTCACACAGCACCCTCATACCCAAACTC
TCCCTGTACACTGAAGTGCTCATTGGGGTGAGTCTCATCATCATTGGCCT
CCTGGGGCTAAAGGAGGCGGCGCATTTCGACGTTTCCGCAGTCATGCCTC
TGGAAGCCGAGGGCTCGATTACCGGATCGGGTGCATCTGGTGCCGCTAAA
AAGGCCACGGGTAAAGCGGTCTTTCTCAATGGATTGCTGCATGGCTTCTC
TTGGGACGGAACACCGACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGC
TCCCGGTGATGACATTCCTGTGCTCCTACGGCCTCGGCACCATGCTTTCC
ATGAGCACCGCCACCAGCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCA
GGCTTTGGACAAGCCAAATATCCCCAAGAAACTTGCCCAAGGGTCCTCTG
TGGTGGCCATCTTGGTGGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGA
GCATATGAATGTCGAGTAGGAAAGGTGCAAAGAGCGGGAATAAAGCATGC
CTCAAAGACGCAATCGATGGTACATATAGATAGTCAGACGGATGACTGCT
GAATCACTGAAAATGAAAAGAATTTAAAAGTCGCAAACAGGCGGTATATA
GGCTCGTTGCGTTCATGATTGAAAGGAGCGTCCCATCATTCTTTTTTAAA
GCAACGCATGCAAAACGGTGTCGAAATGATAGACACGGGAGCAAAGAATG
TCTGGCTAGAGGTCCACGGAGGGGCCTTGGA

protein sequence of rna2618

>rna2618-protein ID=rna2618-protein|Name=rna2618|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTL
GFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSA
TGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVT
GPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLS
TYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGS
ITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMT
FLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAIL
VGLVWTVKALV

mRNA from alignment at CM002459.1:808547..810361-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2618 ID=rna2618|Name=rna2618|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp|location=Sequence derived from alignment at CM002459.1:808547..810361- (Nannochloropsis gaditana)
CCCAACTGCAGTCATACACATAAATGCCCTCCAGCGTTTCACCGTAGTCC
AGGCGGAAAAAAAATCGGTATCGAATATATTGGTTGTGTGTGCGCCTTGA
CAGAATGGCTGAAGACGATATATCAGGGACCAGAGTTAACGCCGTGGCCT
GATGTTCAGCCAAAAAAATGACACGACCCTCGGAGAAATTAAGTATCTTA
CGTCTTATACGGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAATACC
TCGGTTAAAAGCAAGTACGGCACCAACAAGGAGACGAATGAGATTAACGT
CTTGGGTATTGACCCTGGGTTTCCTACTCGGACATGCATCCGCGTTCGTT
CGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATCCCTT
CGACAATAAATTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACCTATT
ACCGACGTTTATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAACGGAG
AATGGTCTAATTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCACCGG
TTTGCCTCTTGTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCGGGAT
CTTTGCATGCTGTGACAGGTATGTTTCTTAGTTTACGTCTGAGATTCTTT
TGGCACGTGCTGCGAGCGAAGGACCCGCACTGTGAGTGTGTCTTTCGCTT
GTCTGCTTCGACTTCATGAGATCCCCTGTGACACTTTCCCCTCAAATTTG
TGAACTTACCGTACCCTGGGAGCAGCACGTACTCACGTCTGTATATCTTT
CATCTCAAAGGTCCCGACCACCTTGCGGCACTGCTACCTCGGTGTATTGG
CAAGCGATGGTACCAAGCAATGCGGATCGGCGCCGTCTGGGGCCTGGGAC
ACGGCATCAGTGCAATCATCATGGGAATGGTCGCGTTTTTCCTCAAAGGC
CGGCTGTCAACCTACTCACACAGCACCCTCATACCCAAACTCTCCCTGTA
CACTGAAGTGCTCATTGGGGTGAGTCTCATCATCATTGGCCTCCTGGGGC
TAAAGGAGGCGGCGCATTTCGACGTTTCCGCAGTCATGCCTCTGGAAGCC
GAGGGCTCGATTACCGGATCGGGTGCATCTGGTGCCGCTAAAAAGGTGCG
TTGATGTAGCGAATGGTCACGTATGTCAGATCATGCGGTAGGAAGAGTCT
GAAAATACTCACTACAACGCTTCTCACTCATCAGAAGGCCACGGGTAAAG
CGGTCTTTCTCAATGGATTGCTGCATGGCTTCTCTTGGGACGGAACACCG
ACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGCTCCCGGTGATGACATT
CCTGTGCTCCTACGGCCTCGGCACCATGCTTTCCATGAGCACCGCCACCA
GCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCAGGCTTTGGACAAGCCA
AATATCCCCAAGAAACTTGCCCAAGGGTCCTCTGTGGTGGCCATCTTGGT
GGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGAGCATATGAATGTCGAG
TAGGAAAGGTGCAAAGAGCGGGAATAAAGCATGCCTCAAAGACGCAATCG
ATGGTACATATAGATAGTCAGACGGATGACTGCTGAATCACTGAAAATGA
AAAGAATTTAAAAGTCGCAAACAGGCGGTATATAGGCTCGTTGCGTTCAT
GATTGAAAGGAGCGTCCCATCATTCTTTTTTAAAGCAACGCATGCAAAAC
GGTGTCGAAATGATAGACACGGGAGCAAAGAATGTCTGGCTAGAGGTCCA
CGGAGGGGCCTTGGA

Coding sequence (CDS) from alignment at CM002459.1:808547..810361-

>rna2618 ID=rna2618|Name=rna2618|organism=Nannochloropsis gaditana|type=CDS|length=3258bp|location=Sequence derived from alignment at CM002459.1:808547..810361- (Nannochloropsis gaditana)
AAGGCCACGGGTAAAGCGGTCTTTCTCAATGGATTGCTGCATGGCTTCTC
TTGGGACGGAACACCGACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGC
TCCCGGTGATGACATTCCTGTGCTCCTACGGCCTCGGCACCATGCTTTCC
ATGAGCACCGCCACCAGCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCA
GGCTTTGGACAAGCCAAATATCCCCAAGAAACTTGCCCAAGGGTCCTCTG
TGGTGGCCATCTTGGTGGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGA
GTCCCGACCACCTTGCGGCACTGCTACCTCGGTGTATTGGCAAGCGATGG
TACCAAGCAATGCGGATCGGCGCCGTCTGGGGCCTGGGACACGGCATCAG
TGCAATCATCATGGGAATGGTCGCGTTTTTCCTCAAAGGCCGGCTGTCAA
CCTACTCACACAGCACCCTCATACCCAAACTCTCCCTGTACACTGAAGTG
CTCATTGGGGTGAGTCTCATCATCATTGGCCTCCTGGGGCTAAAGGAGGC
GGCGCATTTCGACGTTTCCGCAGTCATGCCTCTGGAAGCCGAGGGCTCGA
TTACCGGATCGGGTGCATCTGGTGCCGCTAAAAAGATGACACGACCCTCG
GAGAAATTAAGTATCTTACGTCTTATACGGCACAGGCAGGTATTTCCCAG
GATGCAAAGAATAATACCTCGGTTAAAAGCAAGTACGGCACCAACAAGGA
GACGAATGAGATTAACGTCTTGGGTATTGACCCTGGGTTTCCTACTCGGA
CATGCATCCGCGTTCGTTCGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGG
GCTCCGAGAACATCCCTTCGACAATAAATTTGCCGTCAAATCTACTGTTT
TATTGAAAAAGACCTATTACCGACGTTTATCAGCGACTGGTCCGGTGGCA
CCTTCTTTTTCAACGGAGAATGGTCTAATTCCCCGCGTAAAAACTTTAGC
CAAAAACATGGTCACCGGTTTGCCTCTTGTAGCTTTCTCCACCATTTCTG
GAGGAATGCTGGCGGGATCTTTGCATGCTGTGACAGAAGGCCACGGGTAA
AGCGGTCTTTCTCAATGGATTGCTGCATGGCTTCTCTTGGGACGGAACAC
CGACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGCTCCCGGTGATGACA
TTCCTGTGCTCCTACGGCCTCGGCACCATGCTTTCCATGAGCACCGCCAC
CAGCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCAGGCTTTGGACAAGC
CAAATATCCCCAAGAAACTTGCCCAAGGGTCCTCTGTGGTGGCCATCTTG
GTGGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGAGTCCCGACCACCTT
GCGGCACTGCTACCTCGGTGTATTGGCAAGCGATGGTACCAAGCAATGCG
GATCGGCGCCGTCTGGGGCCTGGGACACGGCATCAGTGCAATCATCATGG
GAATGGTCGCGTTTTTCCTCAAAGGCCGGCTGTCAACCTACTCACACAGC
ACCCTCATACCCAAACTCTCCCTGTACACTGAAGTGCTCATTGGGGTGAG
TCTCATCATCATTGGCCTCCTGGGGCTAAAGGAGGCGGCGCATTTCGACG
TTTCCGCAGTCATGCCTCTGGAAGCCGAGGGCTCGATTACCGGATCGGGT
GCATCTGGTGCCGCTAAAAAGATGACACGACCCTCGGAGAAATTAAGTAT
CTTACGTCTTATACGGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAA
TACCTCGGTTAAAAGCAAGTACGGCACCAACAAGGAGACGAATGAGATTA
ACGTCTTGGGTATTGACCCTGGGTTTCCTACTCGGACATGCATCCGCGTT
CGTTCGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATC
CCTTCGACAATAAATTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACC
TATTACCGACGTTTATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAAC
GGAGAATGGTCTAATTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCA
CCGGTTTGCCTCTTGTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCG
GGATCTTTGCATGCTGTGACAGAAGGCCACGGGTAAAGCGGTCTTTCTCA
ATGGATTGCTGCATGGCTTCTCTTGGGACGGAACACCGACATTAGCCCCT
GCTCTGGCGTTCGACTCCTGGCTCCCGGTGATGACATTCCTGTGCTCCTA
CGGCCTCGGCACCATGCTTTCCATGAGCACCGCCACCAGCCTGATCGGGG
AGGGCACGGTCAAGGTCGGGCAGGCTTTGGACAAGCCAAATATCCCCAAG
AAACTTGCCCAAGGGTCCTCTGTGGTGGCCATCTTGGTGGGACTGGTGTG
GACCGTGAAGGCGCTTGTTTGAGTCCCGACCACCTTGCGGCACTGCTACC
TCGGTGTATTGGCAAGCGATGGTACCAAGCAATGCGGATCGGCGCCGTCT
GGGGCCTGGGACACGGCATCAGTGCAATCATCATGGGAATGGTCGCGTTT
TTCCTCAAAGGCCGGCTGTCAACCTACTCACACAGCACCCTCATACCCAA
ACTCTCCCTGTACACTGAAGTGCTCATTGGGGTGAGTCTCATCATCATTG
GCCTCCTGGGGCTAAAGGAGGCGGCGCATTTCGACGTTTCCGCAGTCATG
CCTCTGGAAGCCGAGGGCTCGATTACCGGATCGGGTGCATCTGGTGCCGC
TAAAAAGATGACACGACCCTCGGAGAAATTAAGTATCTTACGTCTTATAC
GGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAATACCTCGGTTAAAA
GCAAGTACGGCACCAACAAGGAGACGAATGAGATTAACGTCTTGGGTATT
GACCCTGGGTTTCCTACTCGGACATGCATCCGCGTTCGTTCGCCTGCGTC
CCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATCCCTTCGACAATAAA
TTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACCTATTACCGACGTTT
ATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAACGGAGAATGGTCTAA
TTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCACCGGTTTGCCTCTT
GTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCGGGATCTTTGCATGC
TGTGACAG

Synonyms

Publications