EWM28072.1, cds2610 (CDS) Nannochloropsis gaditana

Overview
NameEWM28072.1
Unique Namecds2610
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:809744..810194 -
Alignment locationCM002459.1:809217..809551 -
Alignment locationCM002459.1:808828..809127 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28072.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100044g22.1086.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:809744..810194 -
CM002459.1supercontigCM002459.1:809217..809551 -
CM002459.1supercontigCM002459.1:808828..809127 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|585110414|gb|EWM28072.1| (hypothetical protein Naga_100044g22 [Nannochloropsis gaditana])

HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query:    1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 361
            MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV
Sbjct:    1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 361          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|585110415|gb|EWM28073.1| (hypothetical protein Naga_100044g22 [Nannochloropsis gaditana])

HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 360/361 (99.72%), Postives = 360/361 (99.72%), Query Frame = 0
Query:    1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 361
            MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAA KKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV
Sbjct:    1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAA-KKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 360          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|299471899|emb|CBN77069.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 228.794 bits (582), Expect = 2.406e-70
Identity = 122/229 (53.28%), Postives = 160/229 (69.87%), Query Frame = 0
Query:  139 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITG-------SGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            GG+LAG LHAV+GPDHLAALLPR +G++W+++MRIGA WGLGHG SA ++G+ AFF K RL    +  L+  +  +TE L+GVSLI IGLLGLKE+   D       EA+ + +         G  G  K     +A+F NG+LHGFSWDG P+LAPALA  SW  V+ FL +Y  GTM++MS  T+LIGEG+V+VG+ALD+P+IP+KL+  SS VAI +G VW  KA+
Sbjct:    8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESL-LDYEETPAFEAKSAGSAVVEGGGAPGGGGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 235          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|219125514|ref|XP_002183023.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405298|gb|EEC45241.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 212.616 bits (540), Expect = 4.870e-63
Identity = 114/227 (50.22%), Postives = 159/227 (70.04%), Query Frame = 0
Query:  137 ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS------TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFD--VSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVW 355
            ++GG+ AG LHA+ GPDHLAALLPRC G+RWY+A R+GA+WG+GHG+SA I+G+ AF LK   +T+ +S      TL+   +  TE+ +G+SLI+IG++G++EA  ++  +  V P         S A+ A  K A  +AV  NGLLHGFSWDG P+LAPALA  +W   + FL SY +GTM +M+ AT+LIGEGT K G   D+P+IP+KL+  SS++AI +G+VW
Sbjct:   85 MTGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVAAFGLK---NTFKNSMGSRLQTLVAGATHVTEIAVGLSLILIGMMGIREAREWEDELDGVQPQSLS-----SAAADAGIKTAQKRAVVFNGLLHGFSWDGAPSLAPALAVATWSGNLAFLFSYAVGTMTTMAIATTLIGEGTRKAGDFFDRPDIPQKLSFASSILAIAIGIVW 303          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|1210518917|dbj|GAX22199.1| (hypothetical protein FisN_19Lh263 [Fistulifera solaris])

HSP 1 Score: 211.075 bits (536), Expect = 1.388e-62
Identity = 109/226 (48.23%), Postives = 160/226 (70.80%), Query Frame = 0
Query:  137 ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYS-HSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGK-AVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            I+GG+ AG LHA+ GPDHLAALLPRC G+RWY+A+R+GA+WG+GHG+SA ++G+ AF LK  +        ++   S  TE+ +G+SLI+IG++G++EA  ++      + A  S++ +     A K +T K AV  NG+LHGFSWDG P+LAPA+A  +W   + FL +Y +GTM +M+ AT+LIGEGT K GQ LD+P+IP+KL+  SS++A+++G VW   A+
Sbjct:   70 ITGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGLTAFGLKSTVQNMKGMQKVLAGASHVTEIAVGLSLIVIGVMGIREAREWEQDLTTTMGASQSLSAAVVDEVASKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAIGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAMVIGAVWCYLAV 295          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|223993629|ref|XP_002286498.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977813|gb|EED96139.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 213.001 bits (541), Expect = 1.643e-62
Identity = 110/243 (45.27%), Postives = 152/243 (62.55%), Query Frame = 0
Query:  139 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS--------TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKK-------------KATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            GG+ AGSLHA+ GPDHLAAL+PRC G  WY+A RIGAVWGLGHG+SA ++GM  + +K  ++ + H          ++     + E+ IGVSLI+IGLLG+KEA  ++       E   + TG    G   +             K    A+  NG+LHGFSWDG P+LAPA+A  +W   +TFL SY LGTM +M+ AT++IGEGT +    LD+P++P+ L+ GSS +A++VG+VW   AL
Sbjct:  120 GGLFAGSLHAIAGPDHLAALIPRCCGLPWYRAARIGAVWGLGHGVSATLLGMAGYLVKRGVNLFGHGGVMGGGKFDVLHHAGSFMELAIGVSLIVIGLLGIKEAREWESPGESACEVTDAATGEEEGGQQPQSLSAAVTPNSSPIKTAKSAILFNGILHGFSWDGAPSLAPAVAISTWRGSLTFLISYALGTMAAMTLATTVIGEGTRRASDKLDRPDLPRDLSVGSSFLALIVGVVWCGLAL 362          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|1072234974|gb|OEU19703.1| (hypothetical protein FRACYDRAFT_274568 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 210.305 bits (534), Expect = 4.788e-62
Identity = 113/234 (48.29%), Postives = 156/234 (66.67%), Query Frame = 0
Query:  130 PLVAFST--ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLI-PKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            P VA  T  I+GG+L G+LHA+ GPDHLAALLPRC G+RWY A RIG +WGLGHG S  I+G++ + LK +L+  S + +I    + + EV +G+SLIIIG++GLKEA  +     M      S++ +      K     +AV  NGLLHGFSWDG P+LAPALA  SW   + FL +Y  GT+  M+ ATSLIGEGT + G+  ++P++P+KL+  +S++AI +G+VW   AL
Sbjct:   78 PAVAAVTGVITGGILGGALHAIAGPDHLAALLPRCCGQRWYNAGRIGILWGLGHGTSVTILGILGYALKSQLTKASGAKVILTGAAHFMEVAVGLSLIIIGIMGLKEAREWGEE--MEELPTYSLSSAVTPSEGKANNGNRAVIFNGLLHGFSWDGAPSLAPALAVASWGGNLAFLSAYAAGTIGVMAIATSLIGEGTRRAGEVFNRPDLPQKLSFFTSLLAITIGVVWCGLAL 309          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|873241305|emb|CEL92570.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 213.386 bits (542), Expect = 9.733e-62
Identity = 114/239 (47.70%), Postives = 157/239 (65.69%), Query Frame = 0
Query:  129 LPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS-----TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVM-PLEAEG-SITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            LP  +  T+ GG LAGSLHAV+GPDHLAALLP+C+G+RW  A ++G VWGLGHG+SA+IMGM+AF LK R+     +      LI ++  +TE L+G+SLI+IG  G KEA  +D   +   L+A        G    +     G  +F NG+LHGFS DG P LAP+L+F  W  V  FL SY  GTML+MS  ++  GEG++++ +A+D+P+IPK+LA G+S  A  +G+VW  KA+
Sbjct:  205 LPAASIVTVGGGALAGSLHAVSGPDHLAALLPQCLGRRWTGAGKLGLVWGLGHGLSAMIMGMLAFVLKDRIFVMDAAGLHGGALIERMETWTEGLVGLSLILIGFFGYKEARSWDAEELQAQLDARAKEEQKEGYRDLSASLRRGLTLFFNGMLHGFSLDGAPGLAPSLSFTRWPAVFLFLLSYCTGTMLTMSACSAAAGEGSIRLTRAVDRPDIPKRLAFGASAFAAGIGIVWFAKAI 443          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|1210521687|dbj|GAX19677.1| (hypothetical protein FisN_19Hh263 [Fistulifera solaris])

HSP 1 Score: 192.586 bits (488), Expect = 3.319e-56
Identity = 113/238 (47.48%), Postives = 165/238 (69.33%), Query Frame = 0
Query:  129 LPL-VAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKL----SLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGK-AVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
            LP+ + F T S G+ +   H V GPDHLAALLPRC G+RWY+A+R+GA+WG+GHG+SA ++G+ AF LK   ST +    I K+    S  TE+ +G+SLI+IG++G++EA  ++      + ++ S++ +     A K +T K AV  NG+LHGFSWDG P+LAPA+A  +W   + FL +Y +GTM +M+ AT+LIGEGT K GQ LD+P+IP+KL+  SS++AI++G VW   A+
Sbjct:    3 LPVRIQFYTFSHGIHS---HFV-GPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATLLGLTAFGLK---STINRMKGIEKVLAGASHVTEIAVGLSLIVIGVMGIREAREWEQDLTTTMASQ-SLSAAVVDQVASKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAVGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAIVIGAVWCYLAV 232          
BLAST of EWM28072.1 vs. NCBI_GenBank
Match: gi|397635608|gb|EJK71932.1| (hypothetical protein THAOC_06584 [Thalassiosira oceanica])

HSP 1 Score: 172.17 bits (435), Expect = 2.024e-47
Identity = 118/283 (41.70%), Postives = 161/283 (56.89%), Query Frame = 0
Query:   80 NKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYT------EVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWT 356
            ++ A    V L    +RR  AT   A  F+        + T++          A    +GG+ +GSLHA+ GPDHLAAL+PRC G +WY A R+GA+WGLGHG SA ++GM  F LK  ++          +          E+ IG+SLIIIGLLG+KEA  +   +  P     S   S  + A       K V LNGLLHGFSWDG P+LAPA+A  SW   +TFL +Y  GTM +M+ AT++IGEGT K    LD+P++P+ L+  SS +A++VG+VW 
Sbjct:   34 SRIARVEQVALSHDIHRREEATQLHAKPFAASALPAASLATIS----------ALELTTGGVFSGSLHAIAGPDHLAALIPRCCGLKWYSAARVGAIWGLGHGFSATLLGMAGFLLKKGVNLTGFGGFGLGMDWTKHAGSAMELAIGISLIIIGLLGVKEAREWSSPSGSPQSL--SSAASPEALAVNPNQPTKRVLLNGLLHGFSWDGAPSLAPAVAVSSWKGSLTFLLAYAFGTMATMTLATTVIGEGTCKAAGKLDRPDLPRDLSVASSFLALIVGVVWC 304          
The following BLAST results are available for this feature:
BLAST of EWM28072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110414|gb|EWM28072.1|0.000e+0100.00hypothetical protein Naga_100044g22 [Nannochlorops... [more]
gi|585110415|gb|EWM28073.1|0.000e+099.72hypothetical protein Naga_100044g22 [Nannochlorops... [more]
gi|299471899|emb|CBN77069.1|2.406e-7053.28conserved unknown protein [Ectocarpus siliculosus][more]
gi|219125514|ref|XP_002183023.1|4.870e-6350.22predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210518917|dbj|GAX22199.1|1.388e-6248.23hypothetical protein FisN_19Lh263 [Fistulifera sol... [more]
gi|223993629|ref|XP_002286498.1|1.643e-6245.27predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072234974|gb|OEU19703.1|4.788e-6248.29hypothetical protein FRACYDRAFT_274568 [Fragilario... [more]
gi|873241305|emb|CEL92570.1|9.733e-6247.70unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210521687|dbj|GAX19677.1|3.319e-5647.48hypothetical protein FisN_19Hh263 [Fistulifera sol... [more]
gi|397635608|gb|EJK71932.1|2.024e-4741.70hypothetical protein THAOC_06584 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2618rna2618Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications