rna2617, rna2617 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2617
Unique Name	rna2617
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1137
Alignment location	CM002459.1:808547..810361 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100044g22.1087.mrna
Orig protein id	gnl\|cribi\|Naga_100044g22.1087
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:808547..810361 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100044g22	gene2503	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2617	rna2617-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28073.1	cds2609	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:808547..810361-
coding sequence from alignment at CM002459.1:808547..810361-

mRNA sequence

>rna2617 ID=rna2617|Name=rna2617|organism=Nannochloropsis gaditana|type=mRNA|length=1137bp
ATGCAGCGGTATCGCCTGGCCATACAGTACAATGGAACTCCTTACAGCGG
CTGGCAAAAAGGTGCCGACTCCCTCAAACCCGCCGTTCAAGACGTGTTGG
AGTCAGCAATTCATTCCTTTGTGGGGAAGGATAATTGCGGCGTTTGTCAG
ATATCGTCTCGCACCGACTCCGGAGTGCACGCCCTTCACAACGTTTTGCA
CCTCGATCTCATTCGACGCGCGCGGCAGGTAGGCGACGTTCGAGAACCAC
ACACGCCCGAAACAGTTCGTCGAGCGCTTAACCATTTACTGCAGGGCAGC
GAAATCCAGGTCCTAAACTGTCGCGCAGTAGCACGGGAGGGTGCGGAGGC
GTTCCACGCTCGATACGGGGCCCTCGAACGGAGGTACATCTACAGGCTCC
TGTCAGGCCGAAGCGTATTTGAAGCAAAGCGGGCGTGGTGCTTGGGCTTG
AATGTGACAGAGCGGCGCTTGGATGTAGCTGCCATGCACGCGGCCGCCCA
GGCGCTTGTAGGAGAGCACATGGACTTCACGAGTTTCCGGGGCAAAGACT
GCCAGGCCCAAAGCCCTGTCAAAATCATACGCAGCATCGATGTTGTCCAC
GCCAGCCCCGACCCATTCCACCCTCACGCAACATGTGGAGATATAGTCCA
TGTCTGCATGCGGGCTCACTCCTTCCTCTACCACATGGTGAGAAACATCA
CGGGGGCACTGCATGCGGTAGGCCTCGGTCGCCTCCCCCCGTCGGCGATT
CTGGACATCCTGCGAGCCAGGGACAGGGGCATAGCCCCTCCAATGGCACC
AGCGCAGGGACTGTATCTAGAGCGAGTTTTGTACAAAGATGATTTGGAAG
AAGCAGCTGGTGGACGTGGTGGTGTACAGCCTCTAAGCGAAGTAAAAGCA
AATGAAACGTCCCTATTTCGTCGTTACCGGTTGGGACGAGGGCCGCTCTT
TGACGTTTTTCCAAGGCCCCTCCGTGGACCTCTAGCCAGACATTCTTTGC
TCCCGTGTCTATCATTTCGACACCGTTTTGCATGCGTTGCTTTAAAAAAG
AATGATGGGACGCTCCTTTCAATCATGAACGCAACGAGCCTATATACCGC
CTGTTTGCGACTTTTAAATTCTTTTCATTTTCAGTGA

protein sequence of rna2617

>rna2617-protein ID=rna2617-protein|Name=rna2617|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTL
GFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSA
TGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVT
GPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLS
TYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGS
ITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTF
LCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILV
GLVWTVKALV

mRNA from alignment at CM002459.1:808547..810361-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2617 ID=rna2617|Name=rna2617|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp|location=Sequence derived from alignment at CM002459.1:808547..810361- (Nannochloropsis gaditana)
CCCAACTGCAGTCATACACATAAATGCCCTCCAGCGTTTCACCGTAGTCC
AGGCGGAAAAAAAATCGGTATCGAATATATTGGTTGTGTGTGCGCCTTGA
CAGAATGGCTGAAGACGATATATCAGGGACCAGAGTTAACGCCGTGGCCT
GATGTTCAGCCAAAAAAATGACACGACCCTCGGAGAAATTAAGTATCTTA
CGTCTTATACGGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAATACC
TCGGTTAAAAGCAAGTACGGCACCAACAAGGAGACGAATGAGATTAACGT
CTTGGGTATTGACCCTGGGTTTCCTACTCGGACATGCATCCGCGTTCGTT
CGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATCCCTT
CGACAATAAATTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACCTATT
ACCGACGTTTATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAACGGAG
AATGGTCTAATTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCACCGG
TTTGCCTCTTGTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCGGGAT
CTTTGCATGCTGTGACAGGTATGTTTCTTAGTTTACGTCTGAGATTCTTT
TGGCACGTGCTGCGAGCGAAGGACCCGCACTGTGAGTGTGTCTTTCGCTT
GTCTGCTTCGACTTCATGAGATCCCCTGTGACACTTTCCCCTCAAATTTG
TGAACTTACCGTACCCTGGGAGCAGCACGTACTCACGTCTGTATATCTTT
CATCTCAAAGGTCCCGACCACCTTGCGGCACTGCTACCTCGGTGTATTGG
CAAGCGATGGTACCAAGCAATGCGGATCGGCGCCGTCTGGGGCCTGGGAC
ACGGCATCAGTGCAATCATCATGGGAATGGTCGCGTTTTTCCTCAAAGGC
CGGCTGTCAACCTACTCACACAGCACCCTCATACCCAAACTCTCCCTGTA
CACTGAAGTGCTCATTGGGGTGAGTCTCATCATCATTGGCCTCCTGGGGC
TAAAGGAGGCGGCGCATTTCGACGTTTCCGCAGTCATGCCTCTGGAAGCC
GAGGGCTCGATTACCGGATCGGGTGCATCTGGTGCCGCTAAAAAGGTGCG
TTGATGTAGCGAATGGTCACGTATGTCAGATCATGCGGTAGGAAGAGTCT
GAAAATACTCACTACAACGCTTCTCACTCATCAGAAGGCCACGGGTAAAG
CGGTCTTTCTCAATGGATTGCTGCATGGCTTCTCTTGGGACGGAACACCG
ACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGCTCCCGGTGATGACATT
CCTGTGCTCCTACGGCCTCGGCACCATGCTTTCCATGAGCACCGCCACCA
GCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCAGGCTTTGGACAAGCCA
AATATCCCCAAGAAACTTGCCCAAGGGTCCTCTGTGGTGGCCATCTTGGT
GGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGAGCATATGAATGTCGAG
TAGGAAAGGTGCAAAGAGCGGGAATAAAGCATGCCTCAAAGACGCAATCG
ATGGTACATATAGATAGTCAGACGGATGACTGCTGAATCACTGAAAATGA
AAAGAATTTAAAAGTCGCAAACAGGCGGTATATAGGCTCGTTGCGTTCAT
GATTGAAAGGAGCGTCCCATCATTCTTTTTTAAAGCAACGCATGCAAAAC
GGTGTCGAAATGATAGACACGGGAGCAAAGAATGTCTGGCTAGAGGTCCA
CGGAGGGGCCTTGGA

Coding sequence (CDS) from alignment at CM002459.1:808547..810361-

>rna2617 ID=rna2617|Name=rna2617|organism=Nannochloropsis gaditana|type=CDS|length=3249bp|location=Sequence derived from alignment at CM002459.1:808547..810361- (Nannochloropsis gaditana)
GCCACGGGTAAAGCGGTCTTTCTCAATGGATTGCTGCATGGCTTCTCTTG
GGACGGAACACCGACATTAGCCCCTGCTCTGGCGTTCGACTCCTGGCTCC
CGGTGATGACATTCCTGTGCTCCTACGGCCTCGGCACCATGCTTTCCATG
AGCACCGCCACCAGCCTGATCGGGGAGGGCACGGTCAAGGTCGGGCAGGC
TTTGGACAAGCCAAATATCCCCAAGAAACTTGCCCAAGGGTCCTCTGTGG
TGGCCATCTTGGTGGGACTGGTGTGGACCGTGAAGGCGCTTGTTTGAGTC
CCGACCACCTTGCGGCACTGCTACCTCGGTGTATTGGCAAGCGATGGTAC
CAAGCAATGCGGATCGGCGCCGTCTGGGGCCTGGGACACGGCATCAGTGC
AATCATCATGGGAATGGTCGCGTTTTTCCTCAAAGGCCGGCTGTCAACCT
ACTCACACAGCACCCTCATACCCAAACTCTCCCTGTACACTGAAGTGCTC
ATTGGGGTGAGTCTCATCATCATTGGCCTCCTGGGGCTAAAGGAGGCGGC
GCATTTCGACGTTTCCGCAGTCATGCCTCTGGAAGCCGAGGGCTCGATTA
CCGGATCGGGTGCATCTGGTGCCGCTAAAAAGATGACACGACCCTCGGAG
AAATTAAGTATCTTACGTCTTATACGGCACAGGCAGGTATTTCCCAGGAT
GCAAAGAATAATACCTCGGTTAAAAGCAAGTACGGCACCAACAAGGAGAC
GAATGAGATTAACGTCTTGGGTATTGACCCTGGGTTTCCTACTCGGACAT
GCATCCGCGTTCGTTCGCCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCT
CCGAGAACATCCCTTCGACAATAAATTTGCCGTCAAATCTACTGTTTTAT
TGAAAAAGACCTATTACCGACGTTTATCAGCGACTGGTCCGGTGGCACCT
TCTTTTTCAACGGAGAATGGTCTAATTCCCCGCGTAAAAACTTTAGCCAA
AAACATGGTCACCGGTTTGCCTCTTGTAGCTTTCTCCACCATTTCTGGAG
GAATGCTGGCGGGATCTTTGCATGCTGTGACAGGCCACGGGTAAAGCGGT
CTTTCTCAATGGATTGCTGCATGGCTTCTCTTGGGACGGAACACCGACAT
TAGCCCCTGCTCTGGCGTTCGACTCCTGGCTCCCGGTGATGACATTCCTG
TGCTCCTACGGCCTCGGCACCATGCTTTCCATGAGCACCGCCACCAGCCT
GATCGGGGAGGGCACGGTCAAGGTCGGGCAGGCTTTGGACAAGCCAAATA
TCCCCAAGAAACTTGCCCAAGGGTCCTCTGTGGTGGCCATCTTGGTGGGA
CTGGTGTGGACCGTGAAGGCGCTTGTTTGAGTCCCGACCACCTTGCGGCA
CTGCTACCTCGGTGTATTGGCAAGCGATGGTACCAAGCAATGCGGATCGG
CGCCGTCTGGGGCCTGGGACACGGCATCAGTGCAATCATCATGGGAATGG
TCGCGTTTTTCCTCAAAGGCCGGCTGTCAACCTACTCACACAGCACCCTC
ATACCCAAACTCTCCCTGTACACTGAAGTGCTCATTGGGGTGAGTCTCAT
CATCATTGGCCTCCTGGGGCTAAAGGAGGCGGCGCATTTCGACGTTTCCG
CAGTCATGCCTCTGGAAGCCGAGGGCTCGATTACCGGATCGGGTGCATCT
GGTGCCGCTAAAAAGATGACACGACCCTCGGAGAAATTAAGTATCTTACG
TCTTATACGGCACAGGCAGGTATTTCCCAGGATGCAAAGAATAATACCTC
GGTTAAAAGCAAGTACGGCACCAACAAGGAGACGAATGAGATTAACGTCT
TGGGTATTGACCCTGGGTTTCCTACTCGGACATGCATCCGCGTTCGTTCG
CCTGCGTCCCGCCTCTCCAGTGCTTGCGGGGCTCCGAGAACATCCCTTCG
ACAATAAATTTGCCGTCAAATCTACTGTTTTATTGAAAAAGACCTATTAC
CGACGTTTATCAGCGACTGGTCCGGTGGCACCTTCTTTTTCAACGGAGAA
TGGTCTAATTCCCCGCGTAAAAACTTTAGCCAAAAACATGGTCACCGGTT
TGCCTCTTGTAGCTTTCTCCACCATTTCTGGAGGAATGCTGGCGGGATCT
TTGCATGCTGTGACAGGCCACGGGTAAAGCGGTCTTTCTCAATGGATTGC
TGCATGGCTTCTCTTGGGACGGAACACCGACATTAGCCCCTGCTCTGGCG
TTCGACTCCTGGCTCCCGGTGATGACATTCCTGTGCTCCTACGGCCTCGG
CACCATGCTTTCCATGAGCACCGCCACCAGCCTGATCGGGGAGGGCACGG
TCAAGGTCGGGCAGGCTTTGGACAAGCCAAATATCCCCAAGAAACTTGCC
CAAGGGTCCTCTGTGGTGGCCATCTTGGTGGGACTGGTGTGGACCGTGAA
GGCGCTTGTTTGAGTCCCGACCACCTTGCGGCACTGCTACCTCGGTGTAT
TGGCAAGCGATGGTACCAAGCAATGCGGATCGGCGCCGTCTGGGGCCTGG
GACACGGCATCAGTGCAATCATCATGGGAATGGTCGCGTTTTTCCTCAAA
GGCCGGCTGTCAACCTACTCACACAGCACCCTCATACCCAAACTCTCCCT
GTACACTGAAGTGCTCATTGGGGTGAGTCTCATCATCATTGGCCTCCTGG
GGCTAAAGGAGGCGGCGCATTTCGACGTTTCCGCAGTCATGCCTCTGGAA
GCCGAGGGCTCGATTACCGGATCGGGTGCATCTGGTGCCGCTAAAAAGAT
GACACGACCCTCGGAGAAATTAAGTATCTTACGTCTTATACGGCACAGGC
AGGTATTTCCCAGGATGCAAAGAATAATACCTCGGTTAAAAGCAAGTACG
GCACCAACAAGGAGACGAATGAGATTAACGTCTTGGGTATTGACCCTGGG
TTTCCTACTCGGACATGCATCCGCGTTCGTTCGCCTGCGTCCCGCCTCTC
CAGTGCTTGCGGGGCTCCGAGAACATCCCTTCGACAATAAATTTGCCGTC
AAATCTACTGTTTTATTGAAAAAGACCTATTACCGACGTTTATCAGCGAC
TGGTCCGGTGGCACCTTCTTTTTCAACGGAGAATGGTCTAATTCCCCGCG
TAAAAACTTTAGCCAAAAACATGGTCACCGGTTTGCCTCTTGTAGCTTTC
TCCACCATTTCTGGAGGAATGCTGGCGGGATCTTTGCATGCTGTGACAG

Synonyms

Publications