EWM28073.1, cds2609 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|585110415|gb|EWM28073.1| (hypothetical protein Naga_100044g22 [Nannochloropsis gaditana]) HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 360
MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV
Sbjct: 1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 360
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|585110414|gb|EWM28072.1| (hypothetical protein Naga_100044g22 [Nannochloropsis gaditana]) HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0 Identity = 360/361 (99.72%), Postives = 360/361 (99.72%), Query Frame = 0
Query: 1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAA-KKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 360
MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAA KKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV
Sbjct: 1 MTRPSEKLSILRLIRHRQVFPRMQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLGHASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 361
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|299471899|emb|CBN77069.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 229.565 bits (584), Expect = 1.204e-70 Identity = 122/229 (53.28%), Postives = 157/229 (68.56%), Query Frame = 0
Query: 139 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEA--------EGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
GG+LAG LHAV+GPDHLAALLPR +G++W+++MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ D EA EG G +A+F NG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T+LIGEG+V+VG+ALD+P+IP+KL+ SS VAI +G VW KA+
Sbjct: 8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESL-LDYEETPAFEAKSAGSAVVEGGGAPGGGGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 235
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|219125514|ref|XP_002183023.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405298|gb|EEC45241.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 213.386 bits (542), Expect = 2.398e-63 Identity = 113/226 (50.00%), Postives = 160/226 (70.80%), Query Frame = 0
Query: 137 ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS------TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFD--VSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVW 354
++GG+ AG LHA+ GPDHLAALLPRC G+RWY+A R+GA+WG+GHG+SA I+G+ AF LK +T+ +S TL+ + TE+ +G+SLI+IG++G++EA ++ + V P S++ + A K A +AV NGLLHGFSWDG P+LAPALA +W + FL SY +GTM +M+ AT+LIGEGT K G D+P+IP+KL+ SS++AI +G+VW
Sbjct: 85 MTGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVAAFGLK---NTFKNSMGSRLQTLVAGATHVTEIAVGLSLILIGMMGIREAREWEDELDGVQPQ----SLSSAAADAGIKTAQKRAVVFNGLLHGFSWDGAPSLAPALAVATWSGNLAFLFSYAVGTMTTMAIATTLIGEGTRKAGDFFDRPDIPQKLSFASSILAIAIGIVW 303
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|223993629|ref|XP_002286498.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977813|gb|EED96139.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 211.46 bits (537), Expect = 5.708e-62 Identity = 110/243 (45.27%), Postives = 151/243 (62.14%), Query Frame = 0
Query: 139 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS--------TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAK--------------KATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
GG+ AGSLHA+ GPDHLAAL+PRC G WY+A RIGAVWGLGHG+SA ++GM + +K ++ + H ++ + E+ IGVSLI+IGLLG+KEA ++ E + TG G K A+ NG+LHGFSWDG P+LAPA+A +W +TFL SY LGTM +M+ AT++IGEGT + LD+P++P+ L+ GSS +A++VG+VW AL
Sbjct: 120 GGLFAGSLHAIAGPDHLAALIPRCCGLPWYRAARIGAVWGLGHGVSATLLGMAGYLVKRGVNLFGHGGVMGGGKFDVLHHAGSFMELAIGVSLIVIGLLGIKEAREWESPGESACEVTDAATGEEEGGQQPQSLSAAVTPNSSPIKTAKSAILFNGILHGFSWDGAPSLAPAVAISTWRGSLTFLISYALGTMAAMTLATTVIGEGTRRASDKLDRPDLPRDLSVGSSFLALIVGVVWCGLAL 362
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|873241305|emb|CEL92570.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 213.772 bits (543), Expect = 8.670e-62 Identity = 114/239 (47.70%), Postives = 158/239 (66.11%), Query Frame = 0
Query: 129 LPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHS-----TLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFD---VSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
LP + T+ GG LAGSLHAV+GPDHLAALLP+C+G+RW A ++G VWGLGHG+SA+IMGM+AF LK R+ + LI ++ +TE L+G+SLI+IG G KEA +D + A + A+ +A G +F NG+LHGFS DG P LAP+L+F W V FL SY GTML+MS ++ GEG++++ +A+D+P+IPK+LA G+S A +G+VW KA+
Sbjct: 205 LPAASIVTVGGGALAGSLHAVSGPDHLAALLPQCLGRRWTGAGKLGLVWGLGHGLSAMIMGMLAFVLKDRIFVMDAAGLHGGALIERMETWTEGLVGLSLILIGFFGYKEARSWDAEELQAQLDARAKEEQKEGYRDLSASLRRGLTLFFNGMLHGFSLDGAPGLAPSLSFTRWPAVFLFLLSYCTGTMLTMSACSAAAGEGSIRLTRAVDRPDIPKRLAFGASAFAAGIGIVWFAKAI 443
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|1072234974|gb|OEU19703.1| (hypothetical protein FRACYDRAFT_274568 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 209.534 bits (532), Expect = 8.856e-62 Identity = 114/235 (48.51%), Postives = 159/235 (67.66%), Query Frame = 0
Query: 130 PLVAFST--ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLI-PKLSLYTEVLIGVSLIIIGLLGLKEAAHF--DVSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
P VA T I+GG+L G+LHA+ GPDHLAALLPRC G+RWY A RIG +WGLGHG S I+G++ + LK +L+ S + +I + + EV +G+SLIIIG++GLKEA + ++ + ++T S G A +AV NGLLHGFSWDG P+LAPALA SW + FL +Y GT+ M+ ATSLIGEGT + G+ ++P++P+KL+ +S++AI +G+VW AL
Sbjct: 78 PAVAAVTGVITGGILGGALHAIAGPDHLAALLPRCCGQRWYNAGRIGILWGLGHGTSVTILGILGYALKSQLTKASGAKVILTGAAHFMEVAVGLSLIIIGIMGLKEAREWGEEMEELPTYSLSSAVTPS--EGKANNGN-RAVIFNGLLHGFSWDGAPSLAPALAVASWGGNLAFLSAYAAGTIGVMAIATSLIGEGTRRAGEVFNRPDLPQKLSFFTSLLAITIGVVWCGLAL 309
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|1210518917|dbj|GAX22199.1| (hypothetical protein FisN_19Lh263 [Fistulifera solaris]) HSP 1 Score: 207.223 bits (526), Expect = 4.084e-61 Identity = 107/226 (47.35%), Postives = 159/226 (70.35%), Query Frame = 0
Query: 137 ISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYS-HSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKAT--GKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
I+GG+ AG LHA+ GPDHLAALLPRC G+RWY+A+R+GA+WG+GHG+SA ++G+ AF LK + ++ S TE+ +G+SLI+IG++G++EA ++ + A S++ + A K + +AV NG+LHGFSWDG P+LAPA+A +W + FL +Y +GTM +M+ AT+LIGEGT K GQ LD+P+IP+KL+ SS++A+++G VW A+
Sbjct: 70 ITGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGLTAFGLKSTVQNMKGMQKVLAGASHVTEIAVGLSLIVIGVMGIREAREWEQDLTTTMGASQSLSAAVVDEVASKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAIGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAMVIGAVWCYLAV 295
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|1210521687|dbj|GAX19677.1| (hypothetical protein FisN_19Hh263 [Fistulifera solaris]) HSP 1 Score: 190.274 bits (482), Expect = 2.413e-55 Identity = 112/237 (47.26%), Postives = 162/237 (68.35%), Query Frame = 0
Query: 129 LPL-VAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKL----SLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKATGK-AVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 359
LP+ + F T S G+ + H V GPDHLAALLPRC G+RWY+A+R+GA+WG+GHG+SA ++G+ AF LK ST + I K+ S TE+ +G+SLI+IG++G++EA ++ + ++ A+K +T K AV NG+LHGFSWDG P+LAPA+A +W + FL +Y +GTM +M+ AT+LIGEGT K GQ LD+P+IP+KL+ SS++AI++G VW A+
Sbjct: 3 LPVRIQFYTFSHGIHS---HFV-GPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATLLGLTAFGLK---STINRMKGIEKVLAGASHVTEIAVGLSLIVIGVMGIREAREWEQDLTTTMASQSLSAAVVDQVASKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAVGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAIVIGAVWCYLAV 232
BLAST of EWM28073.1 vs. NCBI_GenBank
Match: gi|397635608|gb|EJK71932.1| (hypothetical protein THAOC_06584 [Thalassiosira oceanica]) HSP 1 Score: 172.17 bits (435), Expect = 2.516e-47 Identity = 117/282 (41.49%), Postives = 161/282 (57.09%), Query Frame = 0
Query: 80 NKFAVKSTVLLKKTYYRRLSATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYT------EVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWT 355
++ A V L +RR AT A F+ + T++ A +GG+ +GSLHA+ GPDHLAAL+PRC G +WY A R+GA+WGLGHG SA ++GM F LK ++ + E+ IG+SLIIIGLLG+KEA + + P ++ S A K V LNGLLHGFSWDG P+LAPA+A SW +TFL +Y GTM +M+ AT++IGEGT K LD+P++P+ L+ SS +A++VG+VW
Sbjct: 34 SRIARVEQVALSHDIHRREEATQLHAKPFAASALPAASLATIS----------ALELTTGGVFSGSLHAIAGPDHLAALIPRCCGLKWYSAARVGAIWGLGHGFSATLLGMAGFLLKKGVNLTGFGGFGLGMDWTKHAGSAMELAIGISLIIIGLLGVKEAREWSSPSGSP-QSLSSAASPEALAVNPNQPTKRVLLNGLLHGFSWDGAPSLAPAVAVSSWKGSLTFLLAYAFGTMATMTLATTVIGEGTCKAAGKLDRPDLPRDLSVASSFLALIVGVVWC 304 The following BLAST results are available for this feature:
BLAST of EWM28073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|