Properties
| Property Name | Value |
|---|
| Product | trna pseudouridine synthase a |
| Orig transcript id | gnl|cribi|Naga_100044g23.1070.mrna |
| Orig protein id | gnl|cribi|Naga_100044g23.1070 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:807359..808724 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2616 ID=rna2616|Name=rna2616|organism=Nannochloropsis gaditana|type=mRNA|length=3785bp
GGCGGGATGGTACTTCTTGGAGCACCTCCAGGCGCGGTATGTTCCTTTTT
CGCGGTTGAATGTGGGACATTTGCCTCGTTCGTGCTGACCGTCATCATGC
ACTCTGTTTTATACACCAGGCTTGGCGGCGGCCTTCTGTCCCTCAGCTGC
TTGCGGGGGGCCAGCACGGGAAGAAATTTGCGAAGCGCCGCTGGAGGACC
GGCACGCAACCAAAGTCCCACGGTACCACATTAATTTTAATAGGGTCGCA
TCTGGTGGGGGGGGGTTCGACCTTGCTGGACGGCTTTTGGGACTCTCCAT
CTTCGGTGAGTGAGCACAGTGCGAAACACTAGTCCTGGTCGACTGCTATG
GAGCAAGCGCGGGCCAGTCTACTGAACAATGATCAGCCTTTCGATGTGGC
GCTTTTGGACAAGGTGGTTATTTGCTCGCAGAATCCATCGGATCCCAACC
GAAATGCAGCACACCAGCTTATGATGGAGATGCAGCAGGACGCAGCGATG
TGGAAACGGGTGGACGCCGTCCTTGAGCGGTCGACAAACCAGGCAACACG
TTTTTTTGGTCTTCAAATTTTAGAAGACACCATCAAAACCCGCTGGAAGA
TCTTGCCAGCGGAGGAGCGGGAAGGGATAAAGAACTACATTGTGGGCAAG
GTGGTGGAGATAAGTAAGGACGATGCCAGCATGGCCGCCGAACGCCTCTT
TCTTAACAAACTAAACATGGCGCTTGTCCAGGTTTTGAAGCAGGAGTGGC
CGCATAACTGGCCTTCCTTCATCGGCGACATTGTCCAGTTTTCCCAGACC
TCGGAGGTTCTTTGTGAGAACAACGTGCGCATTCTCAAGCTTCTGAGCGA
GGAGGTATTCGATTTCTCGAAGGATCAGATGACTACGACCAAGATCAAGA
CATTGAAAGAAAGTCTGCAACATGAGTTTGCCAAAATTTTTGAGCTGTTA
AGCTTCATTCTCTCCCGCTCCCAACGGCCTTCCCTCATCAAAGCGACGCT
GCAAACCCTTCAACGATTCTTGACCTGGATACCCCTCGGCTTCATCTTTG
AGACTTCCCTCATTCAGTCCTTGATAGACACATTCTTCATCGTGCCTGCC
TTTCGCGTCGAAACCTTGGAGTGCCTGACGGAAATCGCCTCCCTCCAGGA
TTTGGACCCTCAGTACGAGCCCCTGTTTCAAAAGATGTACTTGGCCTTTT
TGACACAGCTCCAGACCATCATACCCCCGGACTCGGACCTGTCGGCGCCC
TTCCACAATCAAAATGAAGTGGACTGCCTGTTCATTCAACGGCTGGCTCT
CTTCTTCTGTAGCTTTTTCCGGCTCCACCTGCAGGTCTTGGAGGTCCCTG
AGCATCAGAACGCCTTGCTGACGGGAATGGTCTATTTGGTGCGCATTTCC
GAAGTCCCGGAGGAGGAAGTTTTCAAAATCTGTCTCGACTACTGGCACGT
CCTCTCTCAAGACCTTTACATGGACGACGTGCTCTACCGTTCATCATCCG
ACGCCTTGGTCTATACGCGAGCTTTGAGCGCTGGCGTGGGGGCAAGAATC
AAAAGTGAGGGGTCACCCGCGTCGCCGCGAAAGCAATTTTATATCCCACT
CCTGTCCAGAGTTCGGGTCGTGATGATCTCACGGATGGCTAAACCAGAGG
AAGTATTGGTCGTGGAGGACGAGGCGGGGAACATCGTGCGCGAGCAAACC
AAAGACACGGAAGTCATCGCCCAGTACAAGACCATGCGGGAGGCTTTGGT
GTATCTGACACACCTCGACCAAGACGACACGGAAAGCATTATGCTGGAAA
AGCTGGCGCAACAGGTGGATGGAACAGAGTGGAGCTGGAACAACTTGAAC
ACCCTGTGCTGGGCGATAGGGTCTATTTCCGGTGCCATGGGGGAAGAGGA
AGAGAAACGCTTTCTGGTCACCGTTATCAAGGACCTACTGGGCTTGTGTG
AAATGAAACGGGGGAAAGATAATAAGGCGGTCGTCGCGTCGAATATCATG
TACGTAGTGGGGCAATATCCACGCTTTCTGCGCGCGCCCAAGCACTGGAA
ATTCCTGAGGACTGTGGTGACAAAACTTTTTGAGTTCATGCACGAAAAGC
ATCCAGGAGTCCAAGACATGGCTTGCGATACCTATCTGAAAATTGCTCAG
AAATGTAAGCGGAAATTTGTGACGGTGCAGACGAATGAAACCGCACCGTA
TATTGAAGATCTAGTGGCGAAGATTGGCGAGAATACGTCCGATTTGGAAC
CGCACCAAATATACGTGTTTTACGAGGCGACCGGCACCATGCTGAGCGAC
AAGGGTCCGCAAGTTACGCTTGATCGGGTCGCTGTCCTGGCCAAACTTAT
GGAACTGCCTAATTCGGTTTGGAAAGGTATCATGAGCCAAGCAGCAGTCA
ATTTACAGGTGTTGCTGGACGCTGCGACAATGCGGGAACTGACCAAGATT
CTGAAGACGAATGGGGCGGTGTGTGCTTCAGTTGGACCCCTGTACGTGCA
TCAGCTTGGTGTCATTTTTTTGGACCTGCTCAACCTATACAGCACATACA
GCACGCAAGTGTCTCAAGCCGTTGCTACGCAAGGACCTTACGCGACACGT
ATGAGCAACGTCAGGGCAATGCGAGGTATAAAGAAGGAGATCCTTCGTCT
TTTGACGACCTTTATTGAAAAAAGTGGGGAGCCGGAGTCTACGCCGGCAT
ACGTCGCCCAACAAATAATTCCGCCCATACTCGAGCCGGTGTTGACAGAT
TATCGAAACAGCACTCCCGAGGCAAGGGATGCGGAAGTCTTGACTCTGTT
TGCCGCGGCCGTTGAAAAACTAGGCTCACAGATGGTGCCTGAAATTCCTC
GAATATTGGATCATGTGCTAGATGTGACCTTGGACATGATCAATAAAAAC
TTCGAGGATTTTCCTGAGCACCGCCTTCGATTCTACGCTCTCCTCAAAGC
TGTCAACACGGCCACGTTTGAAGCTATACTGCGGTTGCGGGGCGAACATC
AGAAATTAGTGGTGGACGCAGTGGTGTGGGGAATGAAGCACACGGACCGC
AATATTGCAGAAATGTCTCTAGAGATCTTATTCGACCTGCTCAACAACGT
AGTCCGAGTTCCTGAAGTAGCTCCGGCATTCTACCAAGCCTACTTATTAG
ACCTTATCACCGACATCTTCGTCGTAATGACAGACCGTCTGCACAAGAGC
GGCTTTAAAATGCACGCTACTCTCCTTCGACAAACGTTCTCGCTGATTGA
ATTAGGGCAAGTATCGGCGCCCTTGTTTGATCCTTCAACTCAACCGCCAG
GACAAACCAATCAACAATTTGTGCGGCAATCTGTACTAGATTTGCTTTCT
CGATCATTTCCTAACCTGACTCGCAGTATGATTGTCGAGTTTGTCACAGG
ACTTTTTGATCAGTCGAAAGATCTTACAGCGTACAAAACTCATTTGAGGG
ATTTCCTGGTGCAGCTAAAAGAGTTCTCGGCCGAAGATAACTCGGATCTC
TTCCATGAAGAAGCGGCACTACAGCGCACCCAGCAAGAAAAGGAGCAGCG
TCTCAGTAAGTTGGCCGTTCCAGGGATGGTCAATCCGTACGAGGCGCCGG
ATCCGGATCTGGGTGATCTGTAAGCAAAGCTTGGCACTTGGACAAAGCAA
ATGAGCTGGAGGGTCTGCTAATGGAAAGTAGAGACAAGTAAAAGAGGAGA
GTCCGGTACAAAGCAACAACAACGATCAAAACGAATTGGCAAATGTTTCA
TTTTGTCAAATTTCCTTCTTGGGATGTATACATGA back to topprotein sequence of rna2616 >rna2616-protein ID=rna2616-protein|Name=rna2616|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQ
ISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGS
EIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGL
NVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVH
ASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAI
LDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKA
NETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKK
NDGTLLSIMNATSLYTACLRLLNSFHFQ back to topmRNA from alignment at CM002459.1:807359..808724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2616 ID=rna2616|Name=rna2616|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp|location=Sequence derived from alignment at CM002459.1:807359..808724+ (Nannochloropsis gaditana)
ATGCAGCGGTATCGCCTGGCCATACAGTACAATGGAACTCCTTACAGCGG
CTGGCAAAAAGGTGCCGACTCCCTCAAACCCGCCGTTCAAGACGTGTTGG
AGTCAGCAATTCATTCCTTTGTGGGGAAGGATAATTGCGGCGTTTGTCAG
ATATCGTCTCGCACCGACTCCGGTACGTGGTGAGAGCGCACATTGCACAA
AATATGGCCACAACAACCacgcatcttcttcttcttacGTCTTGCGTTGT
GTTTCGCTCACCGCTAATGGGCCACAAAATATCCTTGATTGTTCACTTGG
CAGGAGTGCACGCCCTTCACAACGTTTTGCACCTCGATCTCATTCGACGC
GCGCGGCAGGTAGGCGACGTTCGAGAACCACACACGCCCGAAACAGTTCG
TCGAGCGCTTAACCATTTACTGCAGGGCAGCGAAATCCAGGTCCTAAACT
GTCGCGCAGTAGCACGGGAGGGTGCGGAGGCGTTCCACGCTCGATACGGG
GCCCTCGAACGGAGGTACATCTACAGGCTCCTGTCAGGCCGAAGCGTATT
TGAAGCAAAGCGGGCGTGGTGCTTGGGCTTGAATGTGACAGAGCGGCGCT
TGGATGTAGCTGCCATGCACGCGGCCGCCCAGGCGCTTGTAGGAGAGCAC
ATGGACTTCACGAGTTTCCGGGGCAAAGACTGCCAGGCCCAAAGCCCTGT
CAAAATCATACGCAGCATCGATGTTGTCCACGCCAGCCCCGACCCATTCC
ACCCTCACGCAACATGTGGAGATATAGTCCATGTCTGCATGCGGGctcac
tccttcctctaccACATGGTGAGAAACATCACGGGGGCACTGCATGCGGT
AGGCCtcggtcgcctccccccgtcgGCGATTCTGGACATCCTGCGAGCCA
GGGACAGGGGCATAGCCCCTCCAATGGCACCAGCGCAGGGACTGTATCTA
GAGCGAGTTTTGTACAAAGATGATTTGGAAGAAGCAGctggtggacgtgg
tgggTGAACTGACTTGAAGATGTCCCGgcccaagggagggggtcggGCGG
GCTCTCACCACAACCTGCAGCCTGACACCTTTATACTCTACATGATTGAA
GTGTACAGCCTCTAAGCGAAGTAAAAGCAAATGAAACGTCCCTATTTCGT
CGTTACCGGTTGGGACGAGGGCCGCTCTTTGACGTTTTTCCAAGGCCCCT
CCGTGGACCTCTAGCCAGACATTCTTTGCTCCCGTGTCTATCATTTCGAC
ACCGTTTTGCATGCGTTGCTTTAAAAAAGAATGATGGGACGCTCCTTTCA
ATCATGAACGCAACGAGCCTATATACCGCCTGTTTGCGACTTTTAAATTC
TTTTCATTTTCAGTGA back to topCoding sequence (CDS) from alignment at CM002459.1:807359..808724+ >rna2616 ID=rna2616|Name=rna2616|organism=Nannochloropsis gaditana|type=CDS|length=3411bp|location=Sequence derived from alignment at CM002459.1:807359..808724+ (Nannochloropsis gaditana)
ATGCAGCGGTATCGCCTGGCCATACAGTACAATGGAACTCCTTACAGCGG
CTGGCAAAAAGGTGCCGACTCCCTCAAACCCGCCGTTCAAGACGTGTTGG
AGTCAGCAATTCATTCCTTTGTGGGGAAGGATAATTGCGGCGTTTGTCAG
ATATCGTCTCGCACCGACTCCGGAGTGCACGCCCTTCACAACGTTTTGCA
CCTCGATCTCATTCGACGCGCGCGGCAGGTAGGCGACGTTCGAGAACCAC
ACACGCCCGAAACAGTTCGTCGAGCGCTTAACCATTTACTGCAGGGCAGC
GAAATCCAGGTCCTAAACTGTCGCGCAGTAGCACGGGAGGGTGCGGAGGC
GTTCCACGCTCGATACGGGGCCCTCGAACGGAGGTACATCTACAGGCTCC
TGTCAGGCCGAAGCGTATTTGAAGCAAAGCGGGCGTGGTGCTTGGGCTTG
AATGTGACAGAGCGGCGCTTGGATGTAGCTGCCATGCACGCGGCCGCCCA
GGCGCTTGTAGGAGAGCACATGGACTTCACGAGTTTCCGGGGCAAAGACT
GCCAGGCCCAAAGCCCTGTCAAAATCATACGCAGCATCGATGTTGTCCAC
GCCAGCCCCGACCCATTCCACCCTCACGCAACATGTGGAGATATAGTCCA
TGTCTGCATGCGGGctcactccttcctctaccACATGGTGAGAAACATCA
CGGGGGCACTGCATGCGGTAGGCCtcggtcgcctccccccgtcgGCGATT
CTGGACATCCTGCGAGCCAGGGACAGGGGCATAGCCCCTCCAATGGCACC
AGCGCAGGGACTGTATCTAGAGCGAGTTTTGTACAAAGATGATTTGGAAG
AAGCAGctggtggacgtggtggTGTACAGCCTCTAAGCGAAGTAAAAGCA
AATGAAACGTCCCTATTTCGTCGTTACCGGTTGGGACGAGGGCCGCTCTT
TGACGTTTTTCCAAGGCCCCTCCGTGGACCTCTAGCCAGACATTCTTTGC
TCCCGTGTCTATCATTTCGACACCGTTTTGCATGCGTTGCTTTAAAAAAG
AATGATGGGACGCTCCTTTCAATCATGAACGCAACGAGCCTATATACCGC
CTGTTTGCGACTTTTAAATTCTTTTCATTTTCAGTGAATGCAGCGGTATC
GCCTGGCCATACAGTACAATGGAACTCCTTACAGCGGCTGGCAAAAAGGT
GCCGACTCCCTCAAACCCGCCGTTCAAGACGTGTTGGAGTCAGCAATTCA
TTCCTTTGTGGGGAAGGATAATTGCGGCGTTTGTCAGATATCGTCTCGCA
CCGACTCCGGAGTGCACGCCCTTCACAACGTTTTGCACCTCGATCTCATT
CGACGCGCGCGGCAGGTAGGCGACGTTCGAGAACCACACACGCCCGAAAC
AGTTCGTCGAGCGCTTAACCATTTACTGCAGGGCAGCGAAATCCAGGTCC
TAAACTGTCGCGCAGTAGCACGGGAGGGTGCGGAGGCGTTCCACGCTCGA
TACGGGGCCCTCGAACGGAGGTACATCTACAGGCTCCTGTCAGGCCGAAG
CGTATTTGAAGCAAAGCGGGCGTGGTGCTTGGGCTTGAATGTGACAGAGC
GGCGCTTGGATGTAGCTGCCATGCACGCGGCCGCCCAGGCGCTTGTAGGA
GAGCACATGGACTTCACGAGTTTCCGGGGCAAAGACTGCCAGGCCCAAAG
CCCTGTCAAAATCATACGCAGCATCGATGTTGTCCACGCCAGCCCCGACC
CATTCCACCCTCACGCAACATGTGGAGATATAGTCCATGTCTGCATGCGG
GctcactccttcctctaccACATGGTGAGAAACATCACGGGGGCACTGCA
TGCGGTAGGCCtcggtcgcctccccccgtcgGCGATTCTGGACATCCTGC
GAGCCAGGGACAGGGGCATAGCCCCTCCAATGGCACCAGCGCAGGGACTG
TATCTAGAGCGAGTTTTGTACAAAGATGATTTGGAAGAAGCAGctggtgg
acgtggtggTGTACAGCCTCTAAGCGAAGTAAAAGCAAATGAAACGTCCC
TATTTCGTCGTTACCGGTTGGGACGAGGGCCGCTCTTTGACGTTTTTCCA
AGGCCCCTCCGTGGACCTCTAGCCAGACATTCTTTGCTCCCGTGTCTATC
ATTTCGACACCGTTTTGCATGCGTTGCTTTAAAAAAGAATGATGGGACGC
TCCTTTCAATCATGAACGCAACGAGCCTATATACCGCCTGTTTGCGACTT
TTAAATTCTTTTCATTTTCAGTGAATGCAGCGGTATCGCCTGGCCATACA
GTACAATGGAACTCCTTACAGCGGCTGGCAAAAAGGTGCCGACTCCCTCA
AACCCGCCGTTCAAGACGTGTTGGAGTCAGCAATTCATTCCTTTGTGGGG
AAGGATAATTGCGGCGTTTGTCAGATATCGTCTCGCACCGACTCCGGAGT
GCACGCCCTTCACAACGTTTTGCACCTCGATCTCATTCGACGCGCGCGGC
AGGTAGGCGACGTTCGAGAACCACACACGCCCGAAACAGTTCGTCGAGCG
CTTAACCATTTACTGCAGGGCAGCGAAATCCAGGTCCTAAACTGTCGCGC
AGTAGCACGGGAGGGTGCGGAGGCGTTCCACGCTCGATACGGGGCCCTCG
AACGGAGGTACATCTACAGGCTCCTGTCAGGCCGAAGCGTATTTGAAGCA
AAGCGGGCGTGGTGCTTGGGCTTGAATGTGACAGAGCGGCGCTTGGATGT
AGCTGCCATGCACGCGGCCGCCCAGGCGCTTGTAGGAGAGCACATGGACT
TCACGAGTTTCCGGGGCAAAGACTGCCAGGCCCAAAGCCCTGTCAAAATC
ATACGCAGCATCGATGTTGTCCACGCCAGCCCCGACCCATTCCACCCTCA
CGCAACATGTGGAGATATAGTCCATGTCTGCATGCGGGctcactccttcc
tctaccACATGGTGAGAAACATCACGGGGGCACTGCATGCGGTAGGCCtc
ggtcgcctccccccgtcgGCGATTCTGGACATCCTGCGAGCCAGGGACAG
GGGCATAGCCCCTCCAATGGCACCAGCGCAGGGACTGTATCTAGAGCGAG
TTTTGTACAAAGATGATTTGGAAGAAGCAGctggtggacgtggtggTGTA
CAGCCTCTAAGCGAAGTAAAAGCAAATGAAACGTCCCTATTTCGTCGTTA
CCGGTTGGGACGAGGGCCGCTCTTTGACGTTTTTCCAAGGCCCCTCCGTG
GACCTCTAGCCAGACATTCTTTGCTCCCGTGTCTATCATTTCGACACCGT
TTTGCATGCGTTGCTTTAAAAAAGAATGATGGGACGCTCCTTTCAATCAT
GAACGCAACGAGCCTATATACCGCCTGTTTGCGACTTTTAAATTCTTTTC
ATTTTCAGTGA back to top
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