EWM28056.1, cds2608 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|585110398|gb|EWM28056.1| (trna pseudouridine synthase a [Nannochloropsis gaditana]) HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ 378 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ Sbjct: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ 378
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|522079669|ref|WP_020590878.1| (tRNA pseudouridine(38-40) synthase [Kiloniella laminariae]) HSP 1 Score: 196.438 bits (498), Expect = 4.327e-57 Identity = 124/296 (41.89%), Postives = 166/296 (56.08%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQP 294 M RY+L I+Y+G+ + GWQ+ D + +VQ+VLE A+ F G+ S RTDSGVHAL V +DL R + VR A+N L+ + + VL V E FHAR+ A ER Y+YR+++ R+ V + +RAW + ++LDVAAMH AAQ LVG H DFTSFR K+CQAQSPVK + I V + G+ + + + A SFLYH VRNI G+L VGLG+ + +L ARDR +A MAPA GLY V + D E+ G V P Sbjct: 1 MPRYKLTIEYDGSDFFGWQRQKDQI--SVQEVLEEAVFKFSGERAQVFA--SGRTDSGVHALGQVASMDLER----------SFPADKVRDAINFHLRPARVAVLATEIVDEE----FHARFSATERSYLYRIINRRAHLVLDHQRAWFV-----PQKLDVAAMHEAAQVLVGTH-DFTSFRAKECQAQSPVKTMNRIAV-----------SQMGEEIRIELSARSFLYHQVRNIAGSLKKVGLGKWTGEDLKRVLAARDRSVAGEMAPAWGLYFVSVSF-DATEQDVGHDPSVGP 260
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1190248821|ref|WP_085900927.1| (tRNA pseudouridine(38-40) synthase TruA [Kiloniella majae]) HSP 1 Score: 193.741 bits (491), Expect = 5.797e-56 Identity = 123/291 (42.27%), Postives = 167/291 (57.39%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQI--SSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282 M RY+L I+Y+GT + GWQ+ + + +VQ+VLE AI F G+ Q+ S RTDSGVHAL V +DL E + P VR A+N ++ +++ VLN V + FHAR+ A ER Y+YR+++ R+ V + +AW + ++LDV AMH AAQ LVG H DFTSFR KDCQA+SPVK I I V G+ + + + A SFLYH VRNITG+L VG+G+ + +L A+DRG A MAPA GLY V L +DD+ Sbjct: 1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGER----IQVFASGRTDSGVHALGQVASMDL-----------EKNFPAHKVREAINFHIRPAKVAVLNVEIVDGD----FHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVNAMHEAAQVLVGVH-DFTSFRAKDCQAKSPVKSINQISVTR-----------HGEEIRIELSARSFLYHQVRNITGSLKKVGIGKWTKEDLKRVLEAKDRGQAGEMAPAWGLYFVSVGFDPLSEDDV 253
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|802562998|ref|XP_012066662.1| (uncharacterized protein LOC105629658 isoform X1 [Jatropha curcas]) HSP 1 Score: 194.897 bits (494), Expect = 1.420e-55 Identity = 129/300 (43.00%), Postives = 166/300 (55.33%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIR-RARQVGDVREPHTPETVRRALNHLLQGSE--IQVLNCRAVAREGAEAFHARYGALERRYIYRLLSG---RSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIV------------HVCM----RAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLY 278 +QRY +A++Y GT ++G QK + V VLE A H F+G+ +SSRTD+GVHAL NV H+D+ R R+ G+V +PH P VRRA+NH LQ +E I V++ R V + FHARY A ER Y YRLLSG S FE RAW +V E LD+ AM A + LVG H DF+SFR CQA+SP++ + + V+ + + P G H C RA SFLYH VR + G L +VG G S + IL A+ A PMAPA GLYL V Y Sbjct: 54 LQRYLIAVEYIGTRFAGSQKQLNCR--TVVGVLEEAFHKFIGQPVS--ISLSSRTDAGVHALSNVCHVDVERISKRKPGEVLQPHEPSVVRRAVNHFLQKNEGDITVVDVRCVPAD----FHARYKACERTYFYRLLSGPEPLSTFEKDRAW----HVPEE-LDLVAMQEACKVLVGHH-DFSSFRASGCQAKSPIRTLDELSVLEVASTLYFPSTMAGGSYGEIELGFGMRRKHHCYVVTARARSFLYHQVRLLVGVLKSVGTGNRTSSDVERILNAKSVTEASPMAPACGLYLGHVKY 339
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|302784784|ref|XP_002974164.1| (hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] >gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii]) HSP 1 Score: 193.356 bits (490), Expect = 3.924e-55 Identity = 124/302 (41.06%), Postives = 169/302 (55.96%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRA-RQVGDVREPHTPETVRRALNHLLQ--GSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVH----------VCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAA 286 +QRY + I+Y GT +SGWQ+ + ++ VQ LE A SF+G+ SSRTD+GVHAL NV H+DL R + R+ G++ PH P+ + RA+NH LQ +++QV++ R V + FHAR+ A ER Y YR+L+G S+FE RAW + E L++ AM +A Q L+G H DF+SFR CQA SPVK + + + P H C V RA SFLYH VR + G L VG G+ + IL R +A PMAPA GL+L V Y D+E+ A Sbjct: 27 IQRYLVGIEYIGTRFSGWQR-QEGVR-TVQGTLEDAFSSFMGQSVSTTG--SSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLGTH-DFSSFRASGCQAASPVKTLEELSIRETVSWP-HLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKY--DMEDTA 311
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|817131540|ref|WP_046504057.1| (tRNA pseudouridine synthase A [Kiloniella litopenaei] >gi|816200807|gb|KKJ77876.1| pseudouridine synthase [Kiloniella litopenaei]) HSP 1 Score: 190.66 bits (483), Expect = 6.831e-55 Identity = 119/289 (41.18%), Postives = 164/289 (56.75%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282 M RY+L I+Y+GT + GWQ+ + + +VQ+VLE AI F G+ S RTDSGVHAL V +DL E P VR A+N ++ +++ VL+ V ++FHAR+ A ER Y+YR+++ R+ V + +AW + ++LDV AMH AAQ LVG H DF+SFR KDCQA+SPVK I I V G+ + + + A SFLYH VRNITG+L VG+G+ + +L A+DR A MAPA GLY V L +DD+ Sbjct: 1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGERTQVFA--SGRTDSGVHALGQVASVDL-----------EKDFPAHKVREAINFHIRPAKVAVLDAEVVD----DSFHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVQAMHEAAQVLVGIH-DFSSFRAKDCQAKSPVKSINRISVTQQ-----------GEEIRIELSARSFLYHQVRNITGSLKKVGMGKWTKEDLKRVLEAKDRSQAGEMAPAWGLYFVSVGFDPLSEDDV 253
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1091506175|ref|XP_018718801.1| (PREDICTED: uncharacterized protein LOC104420000 [Eucalyptus grandis]) HSP 1 Score: 193.741 bits (491), Expect = 7.412e-55 Identity = 130/309 (42.07%), Postives = 173/309 (55.99%), Query Frame = 0 Query: 2 QRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIR-RARQVGDVREPHTPETVRRALNHLLQGSE--IQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHP-------HATCGDI--------VHVCM----RAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGI-------APPMAPAQGLYLERVLY 278 QRY +AI+Y GT +SG QK + V VLE A H F+G+ +C SSRTD+GVHAL NV H+D+ R R+ G+V PH P+ V+RA+NH LQ +E I V++ R + + FHARY A ER Y YRL SG S FE +RAW +VTE L++ +M A + L+G H DF+SFR CQA SP++ + ++V P+ P +T G H C+ RA +FLYH VR + G L +VG G L S + IL A++R + A PMAPA GLYL V Y Sbjct: 63 QRYLVAIEYIGTRFSGSQKQPNFR--TVVGVLEEAFHKFIGQPVSVLC--SSRTDAGVHALSNVCHVDVERISKRKPGEVLAPHEPQVVKRAVNHFLQRNEGDISVIDVRCIPAD----FHARYRARERTYFYRLFSGPEPLSTFEKERAW----HVTEE-LNLVSMQEACKVLIGHH-DFSSFRASGCQANSPIRTLDELNVTEVVSSPYFPSMVERRVESTNGATDLGFGMRKKHRCLVVTARARAFLYHQVRLLVGVLKSVGTGDLTSSDVERILNAKERILNAKDVTAASPMAPACGLYLGHVKY 357
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1190256976|ref|WP_085907427.1| (tRNA pseudouridine(38-40) synthase TruA [Kiloniella majae]) HSP 1 Score: 190.66 bits (483), Expect = 7.443e-55 Identity = 122/291 (41.92%), Postives = 167/291 (57.39%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQI--SSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282 M RY+L I+Y+GT + GWQ+ + + +VQ+VLE AI F G+ Q+ S RTDSGVHAL V +DL E + P VR A+N ++ +++ VL+ V + FHAR+ A ER Y+YR+++ R+ V + +AW + ++LDV AMH AAQ LVG H DFTSFR KDCQA+SPVK I I V G+ + + + A SFLYH VRNITG+L VG+G+ + +L A+DRG A MAPA GLY V L +DD+ Sbjct: 1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGER----IQVFASGRTDSGVHALGQVASMDL-----------EKNFPAHKVREAINFHIRPAKVAVLDVEIVDGD----FHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVNAMHEAAQVLVGVH-DFTSFRAKDCQAKSPVKSINRISVTR-----------HGEEIRIELSARSFLYHQVRNITGSLKKVGIGKWTKEDLKRVLEAKDRGQAGEMAPAWGLYFVSVGFDPLSEDDV 253
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|302770785|ref|XP_002968811.1| (hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] >gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii]) HSP 1 Score: 191.815 bits (486), Expect = 7.769e-55 Identity = 123/302 (40.73%), Postives = 166/302 (54.97%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRA-RQVGDVREPHTPETVRRALNHLLQ--GSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVH----------VCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAA 286 +QRY + I+Y GT +SGWQ+ VQ LE A SF+G+ SSRTD+GVHAL NV H+DL R + R+ G++ PH P+ + RA+NH LQ +++QV++ R V + FHAR+ A ER Y YR+L+G S+FE RAW + E L++ AM +A Q L+G H DF+SFR CQA SP+K + + + P H C V RA SFLYH VR + G L VG G+ + IL R +A PMAPA GL+L V Y D+E+ A Sbjct: 6 IQRYLVGIEYIGTRFSGWQRQGGVR--TVQGTLEDAFSSFMGQSVSTTG--SSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLGTH-DFSSFRASGCQAASPIKTLEELSIRETVSWP-HFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKY--DMEDTA 290
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1200297040|gb|OUU18940.1| (tRNA pseudouridine(38-40) synthase TruA [Alphaproteobacteria bacterium TMED37]) HSP 1 Score: 189.119 bits (479), Expect = 1.617e-54 Identity = 110/280 (39.29%), Postives = 157/280 (56.07%), Query Frame = 0 Query: 1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLY 278 MQ+YR ++Y+G Y GWQ+ + P++Q +E AI +F G+ + + RTDSGVHAL H L+ H P TVR+A+N L I+++ V ++FHAR+ A+ERRY+YR+L+ +S + R W + R+LD+A M AA+ L+GEH DF+SFR KDCQA SP+K + +I V GD +H+ A SFL+ +RNI G+L VG G+ P I IL A++R A P APA+GLY V+Y Sbjct: 1 MQKYRSKVEYDGRHYVGWQRQDNG--PSIQAAVEEAILNFCGEQVEVIA--AGRTDSGVHALGMTTHFALLNNN---------HDPATVRKAINFHLGSQPIKIIETEVVP----DSFHARFSAIERRYLYRILNRQSPPTLDCGRVWHV-----PRKLDIAGMQEAAEILIGEH-DFSSFRAKDCQAASPIKTLNTIKV-----------RKSGDEIHISAHARSFLHRQIRNIVGSLKLVGEGKWDPDDIQRILLAKNRAKAGPTAPAEGLYFLEVIY 246 The following BLAST results are available for this feature:
BLAST of EWM28056.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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