EWM28056.1, cds2608 (CDS) Nannochloropsis gaditana

Overview
NameEWM28056.1
Unique Namecds2608
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:807359..807530 +
Alignment locationCM002459.1:807662..808361 +
Alignment locationCM002459.1:808460..808724 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28056.1
Producttrna pseudouridine synthase a
Orig transcript idgnl|cribi|Naga_100044g23.1070.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:807359..807530 +
CM002459.1supercontigCM002459.1:807662..808361 +
CM002459.1supercontigCM002459.1:808460..808724 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020095PsdUridine_synth_TruA_C
IPR020094PsdUridine_synth_TruA_N
Homology
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|585110398|gb|EWM28056.1| (trna pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ 378
            MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ
Sbjct:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQPLSEVKANETSLFRRYRLGRGPLFDVFPRPLRGPLARHSLLPCLSFRHRFACVALKKNDGTLLSIMNATSLYTACLRLLNSFHFQ 378          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|522079669|ref|WP_020590878.1| (tRNA pseudouridine(38-40) synthase [Kiloniella laminariae])

HSP 1 Score: 196.438 bits (498), Expect = 4.327e-57
Identity = 124/296 (41.89%), Postives = 166/296 (56.08%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAAGGRGGVQP 294
            M RY+L I+Y+G+ + GWQ+  D +  +VQ+VLE A+  F G+        S RTDSGVHAL  V  +DL R              + VR A+N  L+ + + VL    V  E    FHAR+ A ER Y+YR+++ R+  V + +RAW +      ++LDVAAMH AAQ LVG H DFTSFR K+CQAQSPVK +  I V           +  G+ + + + A SFLYH VRNI G+L  VGLG+     +  +L ARDR +A  MAPA GLY   V + D  E+  G    V P
Sbjct:    1 MPRYKLTIEYDGSDFFGWQRQKDQI--SVQEVLEEAVFKFSGERAQVFA--SGRTDSGVHALGQVASMDLER----------SFPADKVRDAINFHLRPARVAVLATEIVDEE----FHARFSATERSYLYRIINRRAHLVLDHQRAWFV-----PQKLDVAAMHEAAQVLVGTH-DFTSFRAKECQAQSPVKTMNRIAV-----------SQMGEEIRIELSARSFLYHQVRNIAGSLKKVGLGKWTGEDLKRVLAARDRSVAGEMAPAWGLYFVSVSF-DATEQDVGHDPSVGP 260          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1190248821|ref|WP_085900927.1| (tRNA pseudouridine(38-40) synthase TruA [Kiloniella majae])

HSP 1 Score: 193.741 bits (491), Expect = 5.797e-56
Identity = 123/291 (42.27%), Postives = 167/291 (57.39%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQI--SSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282
            M RY+L I+Y+GT + GWQ+  + +  +VQ+VLE AI  F G+      Q+  S RTDSGVHAL  V  +DL           E + P   VR A+N  ++ +++ VLN   V  +    FHAR+ A ER Y+YR+++ R+  V +  +AW +      ++LDV AMH AAQ LVG H DFTSFR KDCQA+SPVK I  I V              G+ + + + A SFLYH VRNITG+L  VG+G+     +  +L A+DRG A  MAPA GLY   V    L +DD+
Sbjct:    1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGER----IQVFASGRTDSGVHALGQVASMDL-----------EKNFPAHKVREAINFHIRPAKVAVLNVEIVDGD----FHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVNAMHEAAQVLVGVH-DFTSFRAKDCQAKSPVKSINQISVTR-----------HGEEIRIELSARSFLYHQVRNITGSLKKVGIGKWTKEDLKRVLEAKDRGQAGEMAPAWGLYFVSVGFDPLSEDDV 253          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|802562998|ref|XP_012066662.1| (uncharacterized protein LOC105629658 isoform X1 [Jatropha curcas])

HSP 1 Score: 194.897 bits (494), Expect = 1.420e-55
Identity = 129/300 (43.00%), Postives = 166/300 (55.33%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIR-RARQVGDVREPHTPETVRRALNHLLQGSE--IQVLNCRAVAREGAEAFHARYGALERRYIYRLLSG---RSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIV------------HVCM----RAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLY 278
            +QRY +A++Y GT ++G QK  +     V  VLE A H F+G+       +SSRTD+GVHAL NV H+D+ R   R+ G+V +PH P  VRRA+NH LQ +E  I V++ R V  +    FHARY A ER Y YRLLSG    S FE  RAW    +V E  LD+ AM  A + LVG H DF+SFR   CQA+SP++ +  + V+  +   + P    G               H C     RA SFLYH VR + G L +VG G    S +  IL A+    A PMAPA GLYL  V Y
Sbjct:   54 LQRYLIAVEYIGTRFAGSQKQLNCR--TVVGVLEEAFHKFIGQPVS--ISLSSRTDAGVHALSNVCHVDVERISKRKPGEVLQPHEPSVVRRAVNHFLQKNEGDITVVDVRCVPAD----FHARYKACERTYFYRLLSGPEPLSTFEKDRAW----HVPEE-LDLVAMQEACKVLVGHH-DFSSFRASGCQAKSPIRTLDELSVLEVASTLYFPSTMAGGSYGEIELGFGMRRKHHCYVVTARARSFLYHQVRLLVGVLKSVGTGNRTSSDVERILNAKSVTEASPMAPACGLYLGHVKY 339          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|302784784|ref|XP_002974164.1| (hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] >gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii])

HSP 1 Score: 193.356 bits (490), Expect = 3.924e-55
Identity = 124/302 (41.06%), Postives = 169/302 (55.96%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRA-RQVGDVREPHTPETVRRALNHLLQ--GSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVH----------VCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAA 286
            +QRY + I+Y GT +SGWQ+  + ++  VQ  LE A  SF+G+        SSRTD+GVHAL NV H+DL R + R+ G++  PH P+ + RA+NH LQ   +++QV++ R V  +    FHAR+ A ER Y YR+L+G    S+FE  RAW +     E  L++ AM +A Q L+G H DF+SFR   CQA SPVK +  + +      P H    C               V  RA SFLYH VR + G L  VG G+     +  IL  R   +A PMAPA GL+L  V Y  D+E+ A
Sbjct:   27 IQRYLVGIEYIGTRFSGWQR-QEGVR-TVQGTLEDAFSSFMGQSVSTTG--SSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLGTH-DFSSFRASGCQAASPVKTLEELSIRETVSWP-HLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKY--DMEDTA 311          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|817131540|ref|WP_046504057.1| (tRNA pseudouridine synthase A [Kiloniella litopenaei] >gi|816200807|gb|KKJ77876.1| pseudouridine synthase [Kiloniella litopenaei])

HSP 1 Score: 190.66 bits (483), Expect = 6.831e-55
Identity = 119/289 (41.18%), Postives = 164/289 (56.75%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282
            M RY+L I+Y+GT + GWQ+  + +  +VQ+VLE AI  F G+        S RTDSGVHAL  V  +DL           E   P   VR A+N  ++ +++ VL+   V     ++FHAR+ A ER Y+YR+++ R+  V +  +AW +      ++LDV AMH AAQ LVG H DF+SFR KDCQA+SPVK I  I V              G+ + + + A SFLYH VRNITG+L  VG+G+     +  +L A+DR  A  MAPA GLY   V    L +DD+
Sbjct:    1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGERTQVFA--SGRTDSGVHALGQVASVDL-----------EKDFPAHKVREAINFHIRPAKVAVLDAEVVD----DSFHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVQAMHEAAQVLVGIH-DFSSFRAKDCQAKSPVKSINRISVTQQ-----------GEEIRIELSARSFLYHQVRNITGSLKKVGMGKWTKEDLKRVLEAKDRSQAGEMAPAWGLYFVSVGFDPLSEDDV 253          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1091506175|ref|XP_018718801.1| (PREDICTED: uncharacterized protein LOC104420000 [Eucalyptus grandis])

HSP 1 Score: 193.741 bits (491), Expect = 7.412e-55
Identity = 130/309 (42.07%), Postives = 173/309 (55.99%), Query Frame = 0
Query:    2 QRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIR-RARQVGDVREPHTPETVRRALNHLLQGSE--IQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHP-------HATCGDI--------VHVCM----RAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGI-------APPMAPAQGLYLERVLY 278
            QRY +AI+Y GT +SG QK  +     V  VLE A H F+G+    +C  SSRTD+GVHAL NV H+D+ R   R+ G+V  PH P+ V+RA+NH LQ +E  I V++ R +  +    FHARY A ER Y YRL SG    S FE +RAW    +VTE  L++ +M  A + L+G H DF+SFR   CQA SP++ +  ++V      P+ P        +T G           H C+    RA +FLYH VR + G L +VG G L  S +  IL A++R +       A PMAPA GLYL  V Y
Sbjct:   63 QRYLVAIEYIGTRFSGSQKQPNFR--TVVGVLEEAFHKFIGQPVSVLC--SSRTDAGVHALSNVCHVDVERISKRKPGEVLAPHEPQVVKRAVNHFLQRNEGDISVIDVRCIPAD----FHARYRARERTYFYRLFSGPEPLSTFEKERAW----HVTEE-LNLVSMQEACKVLIGHH-DFSSFRASGCQANSPIRTLDELNVTEVVSSPYFPSMVERRVESTNGATDLGFGMRKKHRCLVVTARARAFLYHQVRLLVGVLKSVGTGDLTSSDVERILNAKERILNAKDVTAASPMAPACGLYLGHVKY 357          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1190256976|ref|WP_085907427.1| (tRNA pseudouridine(38-40) synthase TruA [Kiloniella majae])

HSP 1 Score: 190.66 bits (483), Expect = 7.443e-55
Identity = 122/291 (41.92%), Postives = 167/291 (57.39%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQI--SSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTP-ETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERV----LYKDDL 282
            M RY+L I+Y+GT + GWQ+  + +  +VQ+VLE AI  F G+      Q+  S RTDSGVHAL  V  +DL           E + P   VR A+N  ++ +++ VL+   V  +    FHAR+ A ER Y+YR+++ R+  V +  +AW +      ++LDV AMH AAQ LVG H DFTSFR KDCQA+SPVK I  I V              G+ + + + A SFLYH VRNITG+L  VG+G+     +  +L A+DRG A  MAPA GLY   V    L +DD+
Sbjct:    1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGER----IQVFASGRTDSGVHALGQVASMDL-----------EKNFPAHKVREAINFHIRPAKVAVLDVEIVDGD----FHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVNAMHEAAQVLVGVH-DFTSFRAKDCQAKSPVKSINRISVTR-----------HGEEIRIELSARSFLYHQVRNITGSLKKVGIGKWTKEDLKRVLEAKDRGQAGEMAPAWGLYFVSVGFDPLSEDDV 253          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|302770785|ref|XP_002968811.1| (hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] >gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii])

HSP 1 Score: 191.815 bits (486), Expect = 7.769e-55
Identity = 123/302 (40.73%), Postives = 166/302 (54.97%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRA-RQVGDVREPHTPETVRRALNHLLQ--GSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGR---SVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVH----------VCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDLEEAA 286
            +QRY + I+Y GT +SGWQ+        VQ  LE A  SF+G+        SSRTD+GVHAL NV H+DL R + R+ G++  PH P+ + RA+NH LQ   +++QV++ R V  +    FHAR+ A ER Y YR+L+G    S+FE  RAW +     E  L++ AM +A Q L+G H DF+SFR   CQA SP+K +  + +      P H    C               V  RA SFLYH VR + G L  VG G+     +  IL  R   +A PMAPA GL+L  V Y  D+E+ A
Sbjct:    6 IQRYLVGIEYIGTRFSGWQRQGGVR--TVQGTLEDAFSSFMGQSVSTTG--SSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLGTH-DFSSFRASGCQAASPIKTLEELSIRETVSWP-HFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKY--DMEDTA 290          
BLAST of EWM28056.1 vs. NCBI_GenBank
Match: gi|1200297040|gb|OUU18940.1| (tRNA pseudouridine(38-40) synthase TruA [Alphaproteobacteria bacterium TMED37])

HSP 1 Score: 189.119 bits (479), Expect = 1.617e-54
Identity = 110/280 (39.29%), Postives = 157/280 (56.07%), Query Frame = 0
Query:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRS--VFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLY 278
            MQ+YR  ++Y+G  Y GWQ+  +   P++Q  +E AI +F G+    +   + RTDSGVHAL    H  L+            H P TVR+A+N  L    I+++    V     ++FHAR+ A+ERRY+YR+L+ +S    +  R W +      R+LD+A M  AA+ L+GEH DF+SFR KDCQA SP+K + +I V              GD +H+   A SFL+  +RNI G+L  VG G+  P  I  IL A++R  A P APA+GLY   V+Y
Sbjct:    1 MQKYRSKVEYDGRHYVGWQRQDNG--PSIQAAVEEAILNFCGEQVEVIA--AGRTDSGVHALGMTTHFALLNNN---------HDPATVRKAINFHLGSQPIKIIETEVVP----DSFHARFSAIERRYLYRILNRQSPPTLDCGRVWHV-----PRKLDIAGMQEAAEILIGEH-DFSSFRAKDCQAASPIKTLNTIKV-----------RKSGDEIHISAHARSFLHRQIRNIVGSLKLVGEGKWDPDDIQRILLAKNRAKAGPTAPAEGLYFLEVIY 246          
The following BLAST results are available for this feature:
BLAST of EWM28056.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110398|gb|EWM28056.1|0.000e+0100.00trna pseudouridine synthase a [Nannochloropsis gad... [more]
gi|522079669|ref|WP_020590878.1|4.327e-5741.89tRNA pseudouridine(38-40) synthase [Kiloniella lam... [more]
gi|1190248821|ref|WP_085900927.1|5.797e-5642.27tRNA pseudouridine(38-40) synthase TruA [Kiloniell... [more]
gi|802562998|ref|XP_012066662.1|1.420e-5543.00uncharacterized protein LOC105629658 isoform X1 [J... [more]
gi|302784784|ref|XP_002974164.1|3.924e-5541.06hypothetical protein SELMODRAFT_100819 [Selaginell... [more]
gi|817131540|ref|WP_046504057.1|6.831e-5541.18tRNA pseudouridine synthase A [Kiloniella litopena... [more]
gi|1091506175|ref|XP_018718801.1|7.412e-5542.07PREDICTED: uncharacterized protein LOC104420000 [E... [more]
gi|1190256976|ref|WP_085907427.1|7.443e-5541.92tRNA pseudouridine(38-40) synthase TruA [Kiloniell... [more]
gi|302770785|ref|XP_002968811.1|7.769e-5540.73hypothetical protein SELMODRAFT_231248 [Selaginell... [more]
gi|1200297040|gb|OUU18940.1|1.617e-5439.29tRNA pseudouridine(38-40) synthase TruA [Alphaprot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2616rna2616Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications