rna2604, rna2604 (mRNA) Nannochloropsis gaditana

Overview
Namerna2604
Unique Namerna2604
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1116
Alignment locationCM002459.1:767029..769060 -

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Properties
Property NameValue
Productpyridoxamine 5-phosphate oxidase, putative
Orig transcript idgnl|cribi|Naga_100044g35.1060.mrna
Orig protein idgnl|cribi|Naga_100044g35.1060
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:767029..769060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100044g35gene2490Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28046.1cds2596Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2604rna2604-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2604 ID=rna2604|Name=rna2604|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp
ATGTCGCATCATCATCCAATCCGCAGGAAGAAGGCGGTCACCCCTCCCTC
TCCCCCCGCTTCACGGATCAAGTGCGCTTTCCCACATCAGGCTCGCGCAG
TCATGAAAATTCCATCTTCCATTCTCTTGAGCACTATTGCAACCTGCTCG
ACAGCGGCGGCCTTCATTGTCCGTGGTCCTCACTATCATCACAGCTCCTC
AAGAACGGCCAGCTTTACCCGCCCTGTGAGCACAGAGGTCTGTCTCAGCC
CGGCCGCAAGTCGCCGTCCAGGAGCAAAGCAGTCCCGCTCGCACGCACAA
TCTTCGAGTCACAATGGACTTTTTATGTCGCTGCAGCCTGAGGGAGGAGG
ATTGCCGTGCCAAATCAAGGTGATGGGTGTGGGGGGTGCTGGCGGGAACG
CGGTCAATCGCATGATCGAGGAGGCGGTCACAGGCGTAGAATTCTGGGCG
ATCAACACGGACGCACAAGCGCTCAAGTCCCATCAAGCAGAGAAGAAATT
GAACATTGGTCAACAAGTGACGCGCGGGCTGGGGGCGGGCGGAATACCAG
ACATCGGGCGCCGGGCCGCTGAAGAAAGTCGCGCGGACATCGCGGAGGCG
GTGAAGGGCGCAGACCTGGTCTTTGTGACGGCTGGCATGGGCGGAGGCAC
GGGATCGGGGGCCGCGCCAGTAGTGGCGGAGGTGGCCAAGGAGATGGGCG
CACTCACCATCGGGGTGGTGACGAAACCCTTCCAGTTCGAGGGCCGCCGG
CGCCTGAACCAGGCGACCATGGCCATCGAGGAGCTCGGCAAGGCGGTGGA
CACGCTCATCGTCGTCTCCAATGACAAGCTCCTGCAGATCATCGAACAGA
ATACGCCCTTGGACAAGGCCTTCAAGGTGGCGGATGATATTCTTCGGAAC
GGGGTGGTGGGTATCACCGAGATCATCGTGCGTCCGGGCCTCATCAACGT
GGATTTTGCGGACGTGCGGTCGATCATGGGCAACGCCGGCACGGCATTGA
TGGGAATGGGCGAGGGTGTGGGCAAGACTCTTCCCTGTGAACAATGCCAA
GGGGATCGTCTTCAACATCATGGGCGGGCCCGACATGACCCTCCAGGAGA
TCAACCTGGCCAGTAA
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protein sequence of rna2604

>rna2604-protein ID=rna2604-protein|Name=rna2604|organism=Nannochloropsis gaditana|type=polypeptide|length=501bp
MRSRTPLLQFLVASVSSSSSFAAGPTSHAHPRPHQALAFVTHSLAWGSIR
AISSSITLASASSVGDLPAALNEGGKGGTCRSFSGVPLHSDSNSNNMGDP
CKGSDAAVSSWRQRITLLTQKEAQAIDEELMGTPGFSVDQLMELAGLSVA
SAIHDFLAQPTRSASILILCGPGNNGGDGLVAARHLYHFGYRPVVVYPKR
PARPLFTNLVKQCEDLGIHVGVDMPEDIEAKFDCVVDALFGFGTAGPLRA
PFGEMMQVLSKLTTPIVSVDIPSGWDVEAGDVYGTGFTPDALVSLTAPKK
CAALFRGRHYLGGRFVPPGLQHQYGLDALPAYPGTCQCVEIEGWDEEGGD
EGDKDRDGRGREAPEDRESTARGRPSASPASALTPASTPEFVVVWITAPD
AKEASTLAERLVESDLAACVNIVPRVESVYKWEGKVERNGEVLLMAKTRA
SLVPELSAFVTKHHSYDVPETIAAGIVGGGPEYLKWVRESTREPADGRDT
D
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mRNA from alignment at CM002459.1:767029..769060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2604 ID=rna2604|Name=rna2604|organism=Nannochloropsis gaditana|type=mRNA|length=2032bp|location=Sequence derived from alignment at CM002459.1:767029..769060- (Nannochloropsis gaditana)
GGAGAAATACCAATAGCGGCCCAGGTTGAGTGTGCAATGCAGACAAGGAT
CACCGTCACCAGCGCCAGAGGGCTCGAGCACCGGATGCGGTTTGGTCTTG
AGGCCATGGCTCGTACAAAGAATGGCTGCTTTAACAAGATGAAACGAATG
AGTCGTGGATGATTATTGTGGGAGATTACCACCGCCACATGATGCGTGAT
GAGCTTTCACGGGGTGTCCCGTGTCCTCAAGCCAAAGCGATAAAAAGTGC
AACGTGGGAAGGCGGAGGCAGGAGGTTCTTCCACATGACAAGTAAAGTCA
CTGAATAAAAACCGAGACAACAACAAGAGCGATCTACCACGTGACTGATA
TTATTGCAACAGGTGGATGAGGAGTCGGACGCCCTTGTTGCAGTTCTTGG
TGGCCTCTGTCTCTTCGTCCTCGTCGTTCGCTGCGGGACCTACGTCGCAC
GCGCACCCCCGTCCTCATCAGGCCCTAGCCTTCGTTACACATTCATTGGC
TTGGGGTTCCATTCGGGCGATTTCTTCCTCTATCACACTAGCCTCTGCGT
CTTCTGTGGGTGATCTTCCGGCGGCACTCAACGAAGGGGGAAAGGGCGGC
ACCTGTCGTTCTTTTTCAGGCGTTCCGCTCCACAGCGACAGCAACAGCAA
CAACATGGGGGACCCCTGCAAGGGCTCCGATGCCGCTGTCTCCTCGTGGC
GACAGCGCATCACACTCTTGACACAAAAAGAAGCACAGGCTATCGACGAA
GAGCTCATGGGTACGCCGGGTTTCTCGGTGGACCAACTGATGGAGTTGGC
GGGTCTGAGTGTGGCGAGTGCCATCCATGATTTCCTAGCGCAGCCGACCC
GGTCTGCCTCCATCTTGATCCTCTGCGGTCCTGGCAACAACGGAGGGGAT
GGCCTGGTCGCTGCGCGACATTTATATCACTTTGGATACCGTCCTGTGGT
GGTGTATCCCAAGCGGCCCGCCCGCCCCCTGTTTACGAACTTGGTGAAGC
AATGCGAGGATTTGGGAATCCATGTGGGGGTAGACATGCCTGAGGACATC
GAGGCCAAGTTTGACTGCGTGGTGGATGCCCTCTTCGGCTTCGGGACCGC
GGGCCCGCTCCGCGCTCCCTTTGGAGAGATGATGCAAGTGCTGAGCAAGC
TGACGACCCCGATCGTGTCGGTAGACATTCCGTCGGGCTGGGACGTGGAG
GCCGGGGACGTGTACGGCACTGGCTTCACACCCGACGCCCTTGTGTCCCT
GACCGCGCCCAAGAAATGCGCGGCTTTGTTTCGCGGACGTCACTACTTGG
GCGGCCGCTTTGTCCCCCCGGGGCTCCAGCACCAGTACGGCTTAGACGCC
CTCCCGGCCTATCCGGGGACCTGCCAGTGCGTGGAGATCGAGGGCTGGGA
CGAGGAGGGCGGGGACGAAGGAGACAAGGACCGCGATGGACGTGGGCGAG
AAGCTCCGGAGGACCGTGAGTCTACTGCGCGCGGGCGCCCCTCTGCCTCT
CCTGCCTCCGCATTGACCCCGGCTTCTACCCCGGAATTTGTGGTGGTGTG
GATCACCGCGCCCGATGCCAAGGAGGCGTCCACGTTGGCAGAAAGACTGG
TGGAAAGCGATCTGGCTGCCTGCGTGAACATTGTTCCGCGGGTGGAGTCA
GTCTACAAGTGGGAAGGAAAAGTGGAGAGGAACGGGGAGGTGTTGCTGAT
GGCCAAGACTCGGGCCAGCCTGGTCCCGGAGCTCTCGGCCTTTGTGACGA
AGCATCATTCCTACGATGTGCCTGAAACGATCGCGGCGGGCATTGTGGGG
GGTGGACCCGAGTACCTGAAGTGGGTACGGGAGAGCACGAGGGAGCCGGC
GGATGGAAGGGACACGGACTAGGTAGACATCGGCGGGAGAGAGAGAAGGG
ACAACAGAGGGGGTAAGATGTCCGCCCATGCGAAAAGTGCAGAGTCACGT
TGATACATAGAAAGGATTTGGAAGGGGAAAGCTGAGGCGGCGGGCAGTGA
ACAAAAATTTAGGTCAGCAGGCGTCCCTCCTT
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Coding sequence (CDS) from alignment at CM002459.1:767029..769060-

>rna2604 ID=rna2604|Name=rna2604|organism=Nannochloropsis gaditana|type=CDS|length=1506bp|location=Sequence derived from alignment at CM002459.1:767029..769060- (Nannochloropsis gaditana)
ATGAGGAGTCGGACGCCCTTGTTGCAGTTCTTGGTGGCCTCTGTCTCTTC
GTCCTCGTCGTTCGCTGCGGGACCTACGTCGCACGCGCACCCCCGTCCTC
ATCAGGCCCTAGCCTTCGTTACACATTCATTGGCTTGGGGTTCCATTCGG
GCGATTTCTTCCTCTATCACACTAGCCTCTGCGTCTTCTGTGGGTGATCT
TCCGGCGGCACTCAACGAAGGGGGAAAGGGCGGCACCTGTCGTTCTTTTT
CAGGCGTTCCGCTCCACAGCGACAGCAACAGCAACAACATGGGGGACCCC
TGCAAGGGCTCCGATGCCGCTGTCTCCTCGTGGCGACAGCGCATCACACT
CTTGACACAAAAAGAAGCACAGGCTATCGACGAAGAGCTCATGGGTACGC
CGGGTTTCTCGGTGGACCAACTGATGGAGTTGGCGGGTCTGAGTGTGGCG
AGTGCCATCCATGATTTCCTAGCGCAGCCGACCCGGTCTGCCTCCATCTT
GATCCTCTGCGGTCCTGGCAACAACGGAGGGGATGGCCTGGTCGCTGCGC
GACATTTATATCACTTTGGATACCGTCCTGTGGTGGTGTATCCCAAGCGG
CCCGCCCGCCCCCTGTTTACGAACTTGGTGAAGCAATGCGAGGATTTGGG
AATCCATGTGGGGGTAGACATGCCTGAGGACATCGAGGCCAAGTTTGACT
GCGTGGTGGATGCCCTCTTCGGCTTCGGGACCGCGGGCCCGCTCCGCGCT
CCCTTTGGAGAGATGATGCAAGTGCTGAGCAAGCTGACGACCCCGATCGT
GTCGGTAGACATTCCGTCGGGCTGGGACGTGGAGGCCGGGGACGTGTACG
GCACTGGCTTCACACCCGACGCCCTTGTGTCCCTGACCGCGCCCAAGAAA
TGCGCGGCTTTGTTTCGCGGACGTCACTACTTGGGCGGCCGCTTTGTCCC
CCCGGGGCTCCAGCACCAGTACGGCTTAGACGCCCTCCCGGCCTATCCGG
GGACCTGCCAGTGCGTGGAGATCGAGGGCTGGGACGAGGAGGGCGGGGAC
GAAGGAGACAAGGACCGCGATGGACGTGGGCGAGAAGCTCCGGAGGACCG
TGAGTCTACTGCGCGCGGGCGCCCCTCTGCCTCTCCTGCCTCCGCATTGA
CCCCGGCTTCTACCCCGGAATTTGTGGTGGTGTGGATCACCGCGCCCGAT
GCCAAGGAGGCGTCCACGTTGGCAGAAAGACTGGTGGAAAGCGATCTGGC
TGCCTGCGTGAACATTGTTCCGCGGGTGGAGTCAGTCTACAAGTGGGAAG
GAAAAGTGGAGAGGAACGGGGAGGTGTTGCTGATGGCCAAGACTCGGGCC
AGCCTGGTCCCGGAGCTCTCGGCCTTTGTGACGAAGCATCATTCCTACGA
TGTGCCTGAAACGATCGCGGCGGGCATTGTGGGGGGTGGACCCGAGTACC
TGAAGTGGGTACGGGAGAGCACGAGGGAGCCGGCGGATGGAAGGGACACG
GACTAG
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Synonyms
Publications