rna2602, rna2602 (mRNA) Nannochloropsis gaditana

Overview
Namerna2602
Unique Namerna2602
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1858
Alignment locationCM002459.1:764103..764516 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100120g2.6939.mrna
Orig protein idgnl|cribi|Naga_100120g2.6939
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:764103..764516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100120g2gene2488Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28078.1cds2594Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2602rna2602-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2602 ID=rna2602|Name=rna2602|organism=Nannochloropsis gaditana|type=mRNA|length=1858bp
GCCTTTAAATTAACAAAACTTTTTTTTGGTGATGAGAAGATAGTCTTCTC
GGCTGAACCTGTACCACATCACAGACCTTCGTCTCCTTGCCTACACAAAA
CAACTTGCAAAGGACAACAACAGCATTGTGAAGCACCAAGCGGGGTTTGA
TAGCCCGCGGTGGAATTCAAGAAACCACGTCGCCTCGTCTTTGTTTTCCT
CGTTGCCTCCAGGCGTGATAAAGCGCCCGCCCTGCCCCGGACGACGGCTA
CAGAACGCCGGCAGCAGAGGACACTTATTAACACTTAAGGGGAGTCCATC
CTTGTAAATCTGCACCAATGGAAATCCATACCCATATGAATGGACACTCG
AACGGGCATGCCAGTGGAAATGGCATCCATCCCACAGAGAAGACGAGTTT
GGTGCAACAAGCGCAGCACGCCTATCGTCTGAACGACGTAGAGGCCTCGC
GGCTCATCCATCAGCAGAAATTTGAGGCAAAAACACATGATGAGACTCAT
GATTCTGTCGGAGATTACGTCAAGTCCATGATATTTGGGGGGTTGGATGG
TATTCTCACGTCCTTCGCCATTGTTGCGGGAGCCGCAGGGGGAGGATTGC
CTGTGGAGGTTGTGATGGTTTTGGGCTTCAGCAACATTTTTGCTGATGCA
TTTAGCATGGGCATGGGGGAATATTTGAGCTCGAAGGCACACAATGAGTT
TGTCTTCAAGGAAAAGGAACGGGAAAGCTGGGAGCTGCAAAACTTCAGGG
AAGGCGAGATCAAAGAGATGATTGACATCTATGTGGAGAGAGGCATGGAA
CCGGACGATGCTGAGGATGTGGTTCGAAAGATGTCAAAATACGACGACTT
CTTCGTGAACGTGATGATGGTGGAGGAGCTCGGGCTTCAGGTTCCCGACC
CGAACGACGACATCGTCAAGGAGGGGGTGGTCATGTTTCTGTCATTTGCC
GGCTTTGGGGCCATGCCTCTTCTAGGCTACGCATTGATACCTCTATGCTT
TCCGTCTTTGGGCCCCTCGCATTTATTCAATATCGCCTGTGGGGTTACTG
CTCTGACCCTTTTTATCATGGGCGCCGTCAAGAGCAAGTTTTCCACGCGG
GGTTGGCTGCATTCGGGCTTGGAGATGCTCGTGTTGGGGGGTATATGTGC
GGTCATGGCGTACGAGATCGGGCATTTGGTTTCAAGCTTGGTGGGAGCAG
GCGATACGGAGGGCATTTGAGGTCGTGCATGGGATGTGCGGGAAAAGGAG
GGCGAGACCAGGACCGGAGGGGATTGATAGGGGAAAGTAGGAAGAGCATG
TTTCGGTCTGCTGGACAGAATTTGCAAATTAATTGTGAAGAGGTGGGGGG
AAGCAGTCTATACATTAGGACAAGAGATGCATGGGGACCAGTGGTACCGA
TCGTGCCTTTCATGTGAGATTGAAATCCGTTGGAGGGATGAGCGGCACGT
ACGGGAAAAGGAGCCACGGCAGATAAGGTGTGGGGACGGAATTGATTTTT
GTTGCTGTCTCGTTCTATACATACTTGGAATGGAAAATGTCGGACTTGGA
AGTGGGATCGACAAAACCCCTCAGCAAAAGAAAACCGAGATGGCGATGAG
TGAGAGGATGCGAAATCAGCGCCTGATTCGTCTTCTACAGCCAAAACATT
GGCAAAGGCAAAGAATCAATTTCTTTCATAAAACCAGGCCTTTAATTCGA
CTTACAGGTTGGTTGGTGGGAATCTGTCGCGTCCAAAGGCACAAGTCGCA
GGACGAGCCAACATTCCGACTTCTTCTGTAGGCTGCATCTCGACTAGAAA
ACTACGTCTCGATGCTTCAGAATCACTCAAGTGGCAAAAATAATAGACAG
CTTCAACT
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protein sequence of rna2602

>rna2602-protein ID=rna2602-protein|Name=rna2602|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MLSASLLNCLSGAEAVMKAPPSHGAISACAAETDRMRGQDACFRCWRCRN
SAQKSSCMTDDLTAAGRIKEQSAGHISCPPEVQEFQVEAVYYFCHLSDSE
ASRRSFLVEMQPTEEVGMLARPATCAFGRDRFPPTNL
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mRNA from alignment at CM002459.1:764103..764516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2602 ID=rna2602|Name=rna2602|organism=Nannochloropsis gaditana|type=mRNA|length=414bp|location=Sequence derived from alignment at CM002459.1:764103..764516- (Nannochloropsis gaditana)
ATGCTTTCAGCTAGCCTTTTAAACTGCTTATCGGGTGCCGAGGCTGTTAT
GAAAGCGCCCCCGTCGCATGGAGCCATCTCGGCATGTGCAGCCGAAACAG
ATCGGATGCGTGGGCAAGACGCGTGTTTCCGATGCTGGAGATGTCGGAAT
TCCGCACAGAAATCGTCGTGCATGACGGACGACCTTACCGCCGCAGGCCG
CATAAAGGAACAGAGTGCGGGACACATTTCTTGTCCACCAGAAGTACAGG
AATTTCAAGTTGAAGCTGTCTATTATTTTTGCCACTTGAGTGATTCTGAA
GCATCGAGACGTAGTTTTCTAGTCGAGATGCAGCCTACAGAAGAAGTCGG
AATGTTGGCTCGTCCTGCGACTTGTGCCTTTGGACGCGACAGATTCCCAC
CAACCAACCTGTAA
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Coding sequence (CDS) from alignment at CM002459.1:764103..764516-

>rna2602 ID=rna2602|Name=rna2602|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002459.1:764103..764516- (Nannochloropsis gaditana)
ATGCTTTCAGCTAGCCTTTTAAACTGCTTATCGGGTGCCGAGGCTGTTAT
GAAAGCGCCCCCGTCGCATGGAGCCATCTCGGCATGTGCAGCCGAAACAG
ATCGGATGCGTGGGCAAGACGCGTGTTTCCGATGCTGGAGATGTCGGAAT
TCCGCACAGAAATCGTCGTGCATGACGGACGACCTTACCGCCGCAGGCCG
CATAAAGGAACAGAGTGCGGGACACATTTCTTGTCCACCAGAAGTACAGG
AATTTCAAGTTGAAGCTGTCTATTATTTTTGCCACTTGAGTGATTCTGAA
GCATCGAGACGTAGTTTTCTAGTCGAGATGCAGCCTACAGAAGAAGTCGG
AATGTTGGCTCGTCCTGCGACTTGTGCCTTTGGACGCGACAGATTCCCAC
CAACCAACCTGTAA
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Synonyms
Publications