rna2598, rna2598 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2598
Unique Name	rna2598
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2264
Alignment location	CM002459.1:757057..758879 +

Link to JBrowse

Properties


Property Name	Value
Product	pyridoxamine 5 -phosphate oxidase-related fmn-binding protein
Orig transcript id	gnl\|cribi\|Naga_100120g6.6948.mrna
Orig protein id	gnl\|cribi\|Naga_100120g6.6948
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:757057..758879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g6	gene2484	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2598	rna2598-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28087.1	cds2590	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:757057..758879+
coding sequence from alignment at CM002459.1:757057..758879+

mRNA sequence

>rna2598 ID=rna2598|Name=rna2598|organism=Nannochloropsis gaditana|type=mRNA|length=2264bp
CGGACTAATGCTCTATGACGGCAGGAATACCGTCGTACGTATCATTTGAT
GTAGGCAGAAAGCCAACAGAGGGAGGAGGTCCCTCGGGTGCTCATTTCCT
TCTCCTTTCGATGGCATGTCCCTCAGGCTTTATTAGGGCGACAACGTGCG
TCCACGTCTATCCCAGCATCGCTTTCAAGCTGCTAAAGAAAGATTGAAAA
ACAAGAGTCTACGAGAACGATGGAAGGCGTTTCAATTACTCCCAGCAACG
GGGCCATACCCGCAACTGTTGCGCCCGCTCAAGCCGCCACTGAAAACGAG
GCTGCACCGAAAGACCCCTCTCAAGCCCCCCCTGCCGAGAAAACCATAGT
GCAAAGCTCCGGTGTGATCGAAAGTGACGAGGACGATGTACCGCTATCGG
CACTTGCCAAAAATGGGAAACCCGAAAGCGACGGAGGTGGTGCTCTCGCC
CCCTCTCTTCCGGCCTGCCAGCCTCCCGCCAGTGCCACGCCCGTCGCGAG
TACGACCGGAGCCTCGGTGCCCGCGCAATACGAGAACGACGACGACATGC
CCATCTCGAAGCTCATGCGATACCCTAACCTGGTATTTGCCCATGCAAAG
AAGCGGAAGGAAGGGCAAAGCAAGCAAATCGAGGGCAATGGCAGCGGAGG
CCAGGGCGAGGAGAAGAGCAAGAAGGTCAAGCAAGAGCCTCCCGGGGAGG
AAGAAGACGCGTCGCGGAGCCAGGAGGGTGGCGCAAAGAAGAAGAAGAAG
AGGAAAGATGGAGATGGAGACTCAGGAGGGGCCATGTCGGGGAACGGAAA
GAGCAAAGTGACGAGGAACAGCGCGGCCAACAAGTCTGCAGCGCACGGCC
AGCGGACCCAGGACTTCTACATGCTGGATAAGGGCGAATTGGTGCAGAAA
CTCTTGCGGCGGTGGTGGTACGCCATCCAGTGGCCTGACTCGAGCTGTGC
GACTCAGCCGCCCCCAGATTACGAGACGCTGGAGGGATACCCAGGCGTCT
TCGTCTGCGTGCGCGGACCTGCCATAGGCCACGTTCTCGACAAGCGGAAC
CATGCCGAGTGTCCCAATTTCACAAATTTTGCACGAAAACCTGCCGCGGA
GTTGAAAGACCTGTTGTTGAAGGCCTTGGCAGAGCAACGCCGGCAGTTAC
AAGAGCATGAGGGGGGAAATCGTAAGCTTGAAAAGAAGATCGAGAAGGAG
AGGAGGTGGGTAGAGAGGTTGGACGCGGCAAACGTGGATAAGGAGGCGAT
AAGAAGAGGCTGGGCAGTAACTGACGCGTGATCGAAATGAGGGGGCGGGA
GGTGCGGGGAGGTTGACAAGGATTCTAGGTGCCAGGAGTGAGGCGAGGCA
AGGGGAGAGGGTGGTAGGAGAGGGGAGCCGGCGGGACGCCGAAAAAGCTT
GAGGAGAGATGCAAGGGGAGGAAGGGATCACAGGTGTCGCTAGAAGTACC
TCGTATCGAGGTTTAGCACGAGCAGCTTTCACGTTCCATCGGCTTTCGAG
GTAATGGTAAGCGATTGTCACCTCGGACGCGGACACGGCGACAGTCCCCA
AAGCCCGTGGCAAGTGCCCTGGCCTCGGGGAAGGCAAAATCAAATAGACA
TAGGGGCATATAGAGAAAAGGAAAGAAACTGACGGGAAGACGCCGGCACT
CCCCCCGACCGCCGGTGCTGGCTTGTCGGCTAAGCACAAGACGTAGAGCC
TAGCCTGCTAGTCCCTGTCCCGGCCCATGTATGCTTTGTTTCATTTCTGC
GCAGCCTCCTTTTGCCCCTCGCCCTCCGCAACATGCAAGGCGCCCAACTT
TTCCACCTCCTGCACGAAGGCAGAAAGCACCGGCCGCTCCGACGCCTCGT
CGGCGTCAATCAAGGGCCCCAGGTACAGGCGGAGGTCGGGCTGTTTGGCG
GCTTTCATCTGATGCAAGACCCGCAGAGTGGCCCCCGGGTTCTGCGAGCG
CGCGAACACCTCCATGGCGTCCGTGAATATGAGCAAGTCCGGTTCCAGCT
TCGCCTGCGCCATCTCCTCCAAGAGGTTTAGGCATTTCTCGTGGTCTCCG
GACTTGGCCAGGCCCTTCACGACCCCGCGGTAGCTCCCATTGTTGGGCGC
CACGTTCCCCGCCTTCCCAGCCTTCAGCTCGTCCAAAAGTCGCTGGGCGA
CCGCGGGCTCGTGCGCGAGGCCTGCACACAAGATGGCTGTGTTGTAAGCG
GTCAGTCCCACTGGGAGCCCCGCGCTCCGCATCTCCCCTAATAGGTCGAG
ACACTCCATCCATC

protein sequence of rna2598

>rna2598-protein ID=rna2598-protein|Name=rna2598|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MRRPTLSSWVAVNALVLPAVHAFFSAPLRSLSPPPCRALSSSPSSRLQAA
ATVSPTQASPSTASQNSGGNAAQQQQTGRVEPSPSPPAGDGIGGARPIRL
SLSERARTVTYVATAATLGTFSEAASTPFGSYVDYILDDKGWPVLLLSEQ
SLHTQNIRVNPQVSLFVQMPRSGKADAASAALSRVTLIGSIVPVEAEELP
AIRTAYSIVHSYSERLVESPKFSFCKLKPERVYFVGGFGVQSKWLEVSDY
EAAVPDVLAHEMARIVARINQEHEPELRLMCRHFLGARDVDQVTATTVDR
LGIDLRVTTGELTDEYRVGFREKVVSTEDAKSELVKMFQEAWEREHDYAW
TDELPPVIRYAEDILRKKG

mRNA from alignment at CM002459.1:757057..758879+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2598 ID=rna2598|Name=rna2598|organism=Nannochloropsis gaditana|type=mRNA|length=1823bp|location=Sequence derived from alignment at CM002459.1:757057..758879+ (Nannochloropsis gaditana)
CCCACTTCTCCTCCCGACACAGGGCAGCACACATGAGGAGACCAACTCTT
TCGTCATGGGTGGCGGTCAACGCGCTTGTCCTGCCTGCCGTCCACGCTTT
TTTCTCAGCGCCGCTTCGCAGCCTCAGTCCGCCACCCTGTAGAGGTAGGT
CGGTCGTGGTTTCGATCAAGGGACGAAAGCCAATGGCAGGAACacatgaa
gagagggaggtgctgCCCTTTAAGTTGCATTTACTCTTCAGCTGACATAA
TTGAAATTGTGATGACCGAGGTCTGTGGTCCCTTGTCTTTCTAGCTACGT
ATGCCGGCGTCCCCCAAATATGAGCGAGATGGCTAGAAAACTGCATGAGC
GTACAGAGATGAAAGTAACAAAGACATGCGAGAATTGAATGGTCATTTTT
ACTGAGTCAAAAGTTGGACACGGTCCCCTCCTCAGACGCCCGCCAACTGT
ATCTCCCCCACAAAACAGCTttatcttcctccccgtcatcgcGACTCCAG
GCTGCCGCCACCGTGTCTCCCACGCAAGCTTCTCCCAGTACAGCATCGCA
GAACAGCGGCGGCAATGCAGCTCAGCAGCAACAGACAGGGCGAGTagagc
cctctccctccccgccagcagGCGACGGGATCGGGGGAGCCCGTCCCATT
CGTCTGAGCCTCTCCGAGCGAGCGCGGACCGTGACGTACGTGGCCACAGC
GGCCACCCTGGGCACCTTCAGCGAGGCCGCGTCCACACCCTTCGGCAGCT
ACGTGGACTACATTCTGGACGACAAGGTAGGGACGGGAACGCTCCTGGCA
TGGGGTGGGGCCTGGCTGGTAGAATGCCTCACGATCCCCCTgtccgcctc
gtctttccGCCAGACCTGCTCACCGATCCTCCCCGTTCTCCCCTTGAACG
ATGGCAGGGCTGGCCCGTGCTCCTTTTGAGTGAGCAGTCCCTGCACACGC
AGAACATTCGGGTCAATCCGCaggtctccctcttcgtgcAAATGCCCCGT
TCCGGGAAGGCCGACGCCGCCTCGGCCGCCCTGAGCCGAGTCACGCTGAT
CGGCTCCATCGTACCGGTCGAGGCAGAGGAGCTCCCCGCCATCCGCACAG
CCTACAGCATTGTGCACTCCTACTCAGAGCGCCTGGTCGAGTCCCCCAAA
TTCTCCTTTTGCAAGCTCAAGCCCGAGCGCGTCTACTTCGTGGGCGGCTT
TGGGGTCCAGTCTAAGTGGCTCGAAGTCAGCGACTACGAGGCGGCCGTCC
CAGACGTGCTCGCGCATGAAATGGCCCGGATCGTGGCCCGCATCAACCAG
GAGCACGAGCCCGAACTCCGTCTCATGTGCAGGCATTTCCTGGGGGCGCG
GGACGTCGACCAAGTCACGGCCACGACCGTGGATAGGCTCGGCATCGACC
TGCGCGTGACTACGGGGGAGCTCACGGATGAGTACCGGGTGGGCTTCCGC
GAGAAGGTGGTGAGCACGGAGGATGCCAAAAGCGAGCTGGTGAAGATGTT
TCaggaggcctgggagagggagcatgACTACGCCTGGACCGACGAACTGC
CGCCTGTGATTCGGTACGCGGAGGACATATTGCGAAAGAAGGGCtagggg
aatggaagggagggaggtcggtcCGGAGTCGAGGCCGTGGGTGTATGGTT
AGGTGAGGGATGGGTCgctgagggggggggtctgggggaggggcgccCGG
CGAATCACCGGGATTCCTCGttcgaaggagggaacaagCCGTGAACGACG
TTGGTGTTCCCGCGAAATGTTGAGCTGGCGGCAAgacgaaagaaaaaaag
tccACGGCGTGAGCATTCATTGA

Coding sequence (CDS) from alignment at CM002459.1:757057..758879+

>rna2598 ID=rna2598|Name=rna2598|organism=Nannochloropsis gaditana|type=CDS|length=3330bp|location=Sequence derived from alignment at CM002459.1:757057..758879+ (Nannochloropsis gaditana)
ATGAGGAGACCAACTCTTTCGTCATGGGTGGCGGTCAACGCGCTTGTCCT
GCCTGCCGTCCACGCTTTTTTCTCAGCGCCGCTTCGCAGCCTCAGTCCGC
CACCCTGTAGAGCTttatcttcctccccgtcatcgcGACTCCAGGCTGCC
GCCACCGTGTCTCCCACGCAAGCTTCTCCCAGTACAGCATCGCAGAACAG
CGGCGGCAATGCAGCTCAGCAGCAACAGACAGGGCGAGTagagccctctc
cctccccgccagcagGCGACGGGATCGGGGGAGCCCGTCCCATTCGTCTG
AGCCTCTCCGAGCGAGCGCGGACCGTGACGTACGTGGCCACAGCGGCCAC
CCTGGGCACCTTCAGCGAGGCCGCGTCCACACCCTTCGGCAGCTACGTGG
ACTACATTCTGGACGACAAGGGCTGGCCCGTGCTCCTTTTGAGTGAGCAG
TCCCTGCACACGCAGAACATTCGGGTCAATCCGCaggtctccctcttcgt
gcAAATGCCCCGTTCCGGGAAGGCCGACGCCGCCTCGGCCGCCCTGAGCC
GAGTCACGCTGATCGGCTCCATCGTACCGGTCGAGGCAGAGGAGCTCCCC
GCCATCCGCACAGCCTACAGCATTGTGCACTCCTACTCAGAGCGCCTGGT
CGAGTCCCCCAAATTCTCCTTTTGCAAGCTCAAGCCCGAGCGCGTCTACT
TCGTGGGCGGCTTTGGGGTCCAGTCTAAGTGGCTCGAAGTCAGCGACTAC
GAGGCGGCCGTCCCAGACGTGCTCGCGCATGAAATGGCCCGGATCGTGGC
CCGCATCAACCAGGAGCACGAGCCCGAACTCCGTCTCATGTGCAGGCATT
TCCTGGGGGCGCGGGACGTCGACCAAGTCACGGCCACGACCGTGGATAGG
CTCGGCATCGACCTGCGCGTGACTACGGGGGAGCTCACGGATGAGTACCG
GGTGGGCTTCCGCGAGAAGGTGGTGAGCACGGAGGATGCCAAAAGCGAGC
TGGTGAAGATGTTTCaggaggcctgggagagggagcatgACTACGCCTGG
ACCGACGAACTGCCGCCTGTGATTCGGTACGCGGAGGACATATTGCGAAA
GAAGGGCtagATGAGGAGACCAACTCTTTCGTCATGGGTGGCGGTCAACG
CGCTTGTCCTGCCTGCCGTCCACGCTTTTTTCTCAGCGCCGCTTCGCAGC
CTCAGTCCGCCACCCTGTAGAGCTttatcttcctccccgtcatcgcGACT
CCAGGCTGCCGCCACCGTGTCTCCCACGCAAGCTTCTCCCAGTACAGCAT
CGCAGAACAGCGGCGGCAATGCAGCTCAGCAGCAACAGACAGGGCGAGTa
gagccctctccctccccgccagcagGCGACGGGATCGGGGGAGCCCGTCC
CATTCGTCTGAGCCTCTCCGAGCGAGCGCGGACCGTGACGTACGTGGCCA
CAGCGGCCACCCTGGGCACCTTCAGCGAGGCCGCGTCCACACCCTTCGGC
AGCTACGTGGACTACATTCTGGACGACAAGGGCTGGCCCGTGCTCCTTTT
GAGTGAGCAGTCCCTGCACACGCAGAACATTCGGGTCAATCCGCaggtct
ccctcttcgtgcAAATGCCCCGTTCCGGGAAGGCCGACGCCGCCTCGGCC
GCCCTGAGCCGAGTCACGCTGATCGGCTCCATCGTACCGGTCGAGGCAGA
GGAGCTCCCCGCCATCCGCACAGCCTACAGCATTGTGCACTCCTACTCAG
AGCGCCTGGTCGAGTCCCCCAAATTCTCCTTTTGCAAGCTCAAGCCCGAG
CGCGTCTACTTCGTGGGCGGCTTTGGGGTCCAGTCTAAGTGGCTCGAAGT
CAGCGACTACGAGGCGGCCGTCCCAGACGTGCTCGCGCATGAAATGGCCC
GGATCGTGGCCCGCATCAACCAGGAGCACGAGCCCGAACTCCGTCTCATG
TGCAGGCATTTCCTGGGGGCGCGGGACGTCGACCAAGTCACGGCCACGAC
CGTGGATAGGCTCGGCATCGACCTGCGCGTGACTACGGGGGAGCTCACGG
ATGAGTACCGGGTGGGCTTCCGCGAGAAGGTGGTGAGCACGGAGGATGCC
AAAAGCGAGCTGGTGAAGATGTTTCaggaggcctgggagagggagcatgA
CTACGCCTGGACCGACGAACTGCCGCCTGTGATTCGGTACGCGGAGGACA
TATTGCGAAAGAAGGGCtagATGAGGAGACCAACTCTTTCGTCATGGGTG
GCGGTCAACGCGCTTGTCCTGCCTGCCGTCCACGCTTTTTTCTCAGCGCC
GCTTCGCAGCCTCAGTCCGCCACCCTGTAGAGCTttatcttcctccccgt
catcgcGACTCCAGGCTGCCGCCACCGTGTCTCCCACGCAAGCTTCTCCC
AGTACAGCATCGCAGAACAGCGGCGGCAATGCAGCTCAGCAGCAACAGAC
AGGGCGAGTagagccctctccctccccgccagcagGCGACGGGATCGGGG
GAGCCCGTCCCATTCGTCTGAGCCTCTCCGAGCGAGCGCGGACCGTGACG
TACGTGGCCACAGCGGCCACCCTGGGCACCTTCAGCGAGGCCGCGTCCAC
ACCCTTCGGCAGCTACGTGGACTACATTCTGGACGACAAGGGCTGGCCCG
TGCTCCTTTTGAGTGAGCAGTCCCTGCACACGCAGAACATTCGGGTCAAT
CCGCaggtctccctcttcgtgcAAATGCCCCGTTCCGGGAAGGCCGACGC
CGCCTCGGCCGCCCTGAGCCGAGTCACGCTGATCGGCTCCATCGTACCGG
TCGAGGCAGAGGAGCTCCCCGCCATCCGCACAGCCTACAGCATTGTGCAC
TCCTACTCAGAGCGCCTGGTCGAGTCCCCCAAATTCTCCTTTTGCAAGCT
CAAGCCCGAGCGCGTCTACTTCGTGGGCGGCTTTGGGGTCCAGTCTAAGT
GGCTCGAAGTCAGCGACTACGAGGCGGCCGTCCCAGACGTGCTCGCGCAT
GAAATGGCCCGGATCGTGGCCCGCATCAACCAGGAGCACGAGCCCGAACT
CCGTCTCATGTGCAGGCATTTCCTGGGGGCGCGGGACGTCGACCAAGTCA
CGGCCACGACCGTGGATAGGCTCGGCATCGACCTGCGCGTGACTACGGGG
GAGCTCACGGATGAGTACCGGGTGGGCTTCCGCGAGAAGGTGGTGAGCAC
GGAGGATGCCAAAAGCGAGCTGGTGAAGATGTTTCaggaggcctgggaga
gggagcatgACTACGCCTGGACCGACGAACTGCCGCCTGTGATTCGGTAC
GCGGAGGACATATTGCGAAAGAAGGGCtag

Synonyms

Publications