rna2592, rna2592 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2592
Unique Name	rna2592
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1875
Alignment location	CM002459.1:745433..747210 +

Link to JBrowse

Properties


Property Name	Value
Product	suppressor of g2 allele of skp1
Orig transcript id	gnl\|cribi\|Naga_100120g12.6947.mrna
Orig protein id	gnl\|cribi\|Naga_100120g12.6947
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:745433..747210 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g12	gene2479	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2592	rna2592-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28086.1	cds2584	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:745433..747210+
coding sequence from alignment at CM002459.1:745433..747210+

mRNA sequence

>rna2592 ID=rna2592|Name=rna2592|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp
TAGCTCACATTTGCTACTGCTCCTCTTTTCCACGAACAGGCTGCTAAGGA
CCGGTCAAAGCCGAAAGCCAGGGCCAGGTCCATATAGCGCCCCGTTCGCG
CAATCAAGCAGCACAACGAAGGCTTGCTCTTTCAGTAAACTTTCGTTGTG
CCCACTGCAGTCCATTCGCAAGACTTTCGGTTGAGAATAAATTATGGAGG
TTGGTGGGGGCGAGACCGTGGAAAGTGTGCTGAAGCGATTGGATCAGAAA
AGCGAGTACGCGGTGGTCCGAGGTACATGTGTTGGCATCCTGTTCATCTC
GCTCTGGGCCTTGAATCTGCATGTCTTTAAAGTTGCCCACATCGATATAT
CGTGCATCTACCCCGCTAAGCTCGTCAGCGCGGGGGGGTATGGTGGGAGC
GGGAAAAGCGACCATGGAAGCGGCTCGGGGGGCAGCAGCAAAGACGTCGG
CAGGACTACAGGCAGCAGACGGTCGCCCTCGGCCGTGCTCCAGAAGCAGC
AGCAACAAGCCCAGCAGCCTGTGTGTCACCCGCGCAAGGTGATAAATTTG
GTGACTGTGTTGGTGCTCGCCATGGTGTTCTGCATCCTCATCATGTCCGA
GCTCCTGGGGCAGCCCTACCAGCACGCCCCTTTCATCTTCTACTTTCTGC
TCTTGGCCGCAGTCATCTACCCATCGGACACCACTTTGATGTTCAGAGAG
CTTGCCCTCTTATTTGGGCGGGTCCTTTGGCTGGTGGTGCTCCCGGGGAC
CGAGATTCACTTCCTGGAAGTGTTGGTCGGCGACATCCTAACCAGCCTGT
CCAAGGTTTTCTTCGAGGTCGGCCTCACCTGCGTGGCCACACTCCTTTCT
TTGTCTCCGGGGCTCTTCCGCATTGTCTCCCCCGACATCTTTCCCACCCT
TCTCGCCTCCACGCCATTCATCCTGCGCATTCGCCAGTGCGTGGTACAGC
GCCGCGGAACCGCCTCTGGGAAAGCCCGCTTCCTCGTCTCCCTGAACATC
CTCAAGTACTGCTCCTCCATCCCCGGCCTGTGGCTGCCGCTTCTCCTGGC
CCCTCACTACTCCACCTACCAGATCGAGCGCGTGCTGCTGGTCGTCCTTC
TCGTCAACTCCCTCTACTCCTTCCTGTGGGACGTGATCATGGACTGGGGC
CTCGGCCACGTAAAGCTGACCGGCGCGCCCAAGAAAGGCGGCGGGGGGGC
CGTGCGGCTACGACACTGGGGCCTCCGACCCACCCTCTTGTTCGGATCGG
CCGGGTCCTACTACGCGGCCATCGGGCTGGATTTGGTCCTTCGGCTGGTC
TGGGTCTTAAAGTACGTCAACTTCGACCACCGGCTCTCGTATGACAAATT
CATGCTCCTGATAGAATGTCTGGAGGTGCTGCGGCGTGGCATATGGTCGA
TTTACAGGATTGAGTGGGAGTGTCTGAGCATCAACGGGGGTAGAAAGGGG
GGTGGATTGCTCGGGAGGGTGGAGACGCCGATGGGAGGGGGGATCGGCAT
GGTTGCGATAGGAAGCAAACGGGCAGGAGGGAATGGGGCGGGGAATACGC
TAGCGCGAGATATGGAGGGCGAGGTAGATTTGGAGCGCTCTGTGGGGATC
GAGACTGAAAGTGGGGGCGGCGAGGGCACCGATGTGACGACCGTACTCTT
GTCGCGCTGATCGCAGTCATGCCGTCGGCGAAAAAAAGGGATTCGCAACG
GCTCGCTCATGGCGTGCACCTTTCCGTAAGTGTAAGTATATTTTGAGAAG
GTATATTTTTTAATCTTCACGCCTGAGAACTTGTTGGCTTCTTGAGATAG
AGCCAGCTGAAAGTATAAGTACATTTGTCTGCCCGTCAGGTAAAATAATT
GAAATGACAGTCAACCCTTGCGCAA

protein sequence of rna2592

>rna2592-protein ID=rna2592-protein|Name=rna2592|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MEQAQLAFMDEDYATADELFSAYIATHPDDATALVSRAAVHLKLNQPSQA
LHDAEAAASLKSDLEVAWYRQGVAAFALEDFSRAKEAFMRGRALLGDRPE
PQGRRYDVWLRKTTLELGEHDEQGMTVVAEGGIKELRQEQGAKGIEATVP
RSQPSPTHPPSSAPAIPAGHVKFQFYQTTSYVTVTILYKGLREEDANVSV
QPRHLKVSVGADGDALFDRALFETVVPEESTSKIFATKVEVKLRKAMEGL
TWPELCALSPSAAASVHTVSAPTPDSHATALPSLAQGPATAPSSKPLRPY
ASTKDWGAVEKEISKELESEKPEGDEALNTLFRDIYAKGSDETRRAMVKS
FQTSGGTVLSTNWEEVGKKDYEKEEERKAPEGMEWRKWGV

mRNA from alignment at CM002459.1:745433..747210+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2592 ID=rna2592|Name=rna2592|organism=Nannochloropsis gaditana|type=mRNA|length=1778bp|location=Sequence derived from alignment at CM002459.1:745433..747210+ (Nannochloropsis gaditana)
TCTTCGATGTGACAGGCACGGTGAGAAGCTATGGAGCAGGCGCAGCTTGC
ATTCATGGACGAGGACTACGCCACGGCGGATGAGGTGCGATGGAATAAAG
TGGGGGGTCGAGGGCAGAGCTTCGCTTGGGCTGTAAGCACGCCACCACGA
GCTTCCGCTTCTGTAAACCCACGTGCCTCCCCGTTTGTATTCCCTACTCT
TTCTTCATTCGCCTTTTCTCGCTACAACTCTAGCTCTTCTCGGCTTACAT
TGCAACGCACCCTGACGACGCAACTGCCCTCGTTTCGCGGGCAGCAGTGC
ATTTGAAGTTGAATCAGCCATCACAAGCCCTTCACGACGCTGAAGCCGCC
GCATCCCTGAAATCTGACTTGGAAGTAGCATGGTATCGGCAAGGAGTCGC
GGCGTTTGCTTTGGAGGATTTCTCACGGGCCAAGGAGGCATTCATGCGGG
GGCGTGCCTTGCTTGGCGACCGACCCGAACCTCAAGGGCGTAGATACGAC
GTGTGGCTGCGAAAGACGACTCTAGAATTGGGAGAGCATGATGAGCAGGG
CATGACAGTAGTGGCAGAGGGTGGTATAAAGGAATTGAGGCAAGAACAAG
GTGCGAAGGGAATTGAAGCTACGGTTCCTCGCTCCCAGCCGAGTCCTAcg
catcccccttcctctgcgccAGCTATCCCAGCCGGGCATGTGAAATTTCA
ATTCTACCAGACCACATCCTATGTGACAGTCACCATTCTCTATAAAGGCc
tcagagaggaggacgctAACGTGTCTGTCCAGCCACGCCACCTGAAAGTC
TCAGTGGGCGCAGACGGAGACGCCTTGTTCGACCGAGCTCTTTTTGAGAC
CGTGGTTCCCGAGGAGAGTACCAGCAAAATTTTCGCGACCAAAGTTGAAG
TCAAGCTAAGGAAAGCAATGGAAGGCCTGACGTGGCCTGAGCTGTGTGCT
CTCTCGCCAAGTGCAGCCGCCTCGGTCCACACGGTCTCCGCGCCAACCCC
CGACTCTCACGCGACCGCTCTCCCGTCTTTGGCACAAGGCCCTGCCACTG
CACCGAGCAGCAAGCCCTTGCGGCCATATGCGAGCACCAAAGATTGGGGT
GCAGTCGAGAAAGAGATCTCGAAGGAATTGGAGAGCGAGAAgccggaggg
ggacgaggcctTGAACACGCTCTTCCGGGACATCTACGCCAAGGGCTCCG
ACGAGACACGGCGTGCGATGGTCAAGTCTTTCCAGACGTCGGGAGGGACG
GTGCTGTCCACCaattgggaggaggtggggaagaaagactacgagaagga
ggaggagcgcaagGCCCCGGAAGGCATGGAGTGGCGGAAGTGGGGGGTGT
AGGCAAGGACGTGTTAGGAGAGTTGGCGAGGATCCGGGGGGGAGCTTTCG
GCTGTGTACAGGCTTATAGAGGTCCGTAAGCTCGTGAGAAGccgtgggaa
aggaagaggctGAGTAAAGATTGAGTACAACAGACTTCGCATGGGTGTGC
CGCTAGGGCGAGTCACGGCTATGCACACGTCCAGGGTGTCGGACGGCAGG
AAGCGCCACCCCGTGCTCTGTCGACTGCTTTCTGGTTCTCATTCATCTAA
AACTTGATACTGTGAGGACCGCACCGGATAAGCGAAATGTTTTGGTGCCT
TCCGCCTCAAAGGCATCCCGATCAAAGGCATTTGTTTCTTTTGCGCGTTT
TCATCTCGTTTTAAAACTTAAGTTCATCAGGTCATACGACAACTGTATAG
AATTGCATAATTTATAGACGATTTCTTG

Coding sequence (CDS) from alignment at CM002459.1:745433..747210+

>rna2592 ID=rna2592|Name=rna2592|organism=Nannochloropsis gaditana|type=CDS|length=2346bp|location=Sequence derived from alignment at CM002459.1:745433..747210+ (Nannochloropsis gaditana)
ATGGAGCAGGCGCAGCTTGCATTCATGGACGAGGACTACGCCACGGCGGA
TGAGCTCTTCTCGGCTTACATTGCAACGCACCCTGACGACGCAACTGCCC
TCGTTTCGCGGGCAGCAGTGCATTTGAAGTTGAATCAGCCATCACAAGCC
CTTCACGACGCTGAAGCCGCCGCATCCCTGAAATCTGACTTGGAAGTAGC
ATGGTATCGGCAAGGAGTCGCGGCGTTTGCTTTGGAGGATTTCTCACGGG
CCAAGGAGGCATTCATGCGGGGGCGTGCCTTGCTTGGCGACCGACCCGAA
CCTCAAGGGCGTAGATACGACGTGTGGCTGCGAAAGACGACTCTAGAATT
GGGAGAGCATGATGAGCAGGGCATGACAGTAGTGGCAGAGGGTGGTATAA
AGGAATTGAGGCAAGAACAAGGTGCGAAGGGAATTGAAGCTACGGTTCCT
CGCTCCCAGCCGAGTCCTAcgcatcccccttcctctgcgccAGCTATCCC
AGCCGGGCATGTGAAATTTCAATTCTACCAGACCACATCCTATGTGACAG
TCACCATTCTCTATAAAGGCctcagagaggaggacgctAACGTGTCTGTC
CAGCCACGCCACCTGAAAGTCTCAGTGGGCGCAGACGGAGACGCCTTGTT
CGACCGAGCTCTTTTTGAGACCGTGGTTCCCGAGGAGAGTACCAGCAAAA
TTTTCGCGACCAAAGTTGAAGTCAAGCTAAGGAAAGCAATGGAAGGCCTG
ACGTGGCCTGAGCTGTGTGCTCTCTCGCCAAGTGCAGCCGCCTCGGTCCA
CACGGTCTCCGCGCCAACCCCCGACTCTCACGCGACCGCTCTCCCGTCTT
TGGCACAAGGCCCTGCCACTGCACCGAGCAGCAAGCCCTTGCGGCCATAT
GCGAGCACCAAAGATTGGGGTGCAGTCGAGAAAGAGATCTCGAAGGAATT
GGAGAGCGAGAAgccggagggggacgaggcctTGAACACGCTCTTCCGGG
ACATCTACGCCAAGGGCTCCGACGAGACACGGCGTGCGATGGTCAAGTCT
TTCCAGACGTCGGGAGGGACGGTGCTGTCCACCaattgggaggaggtggg
gaagaaagactacgagaaggaggaggagcgcaagGCCCCGGAAGGCATGG
AGTGGCGGAAGTGGGGGGTGTAGATGGAGCAGGCGCAGCTTGCATTCATG
GACGAGGACTACGCCACGGCGGATGAGCTCTTCTCGGCTTACATTGCAAC
GCACCCTGACGACGCAACTGCCCTCGTTTCGCGGGCAGCAGTGCATTTGA
AGTTGAATCAGCCATCACAAGCCCTTCACGACGCTGAAGCCGCCGCATCC
CTGAAATCTGACTTGGAAGTAGCATGGTATCGGCAAGGAGTCGCGGCGTT
TGCTTTGGAGGATTTCTCACGGGCCAAGGAGGCATTCATGCGGGGGCGTG
CCTTGCTTGGCGACCGACCCGAACCTCAAGGGCGTAGATACGACGTGTGG
CTGCGAAAGACGACTCTAGAATTGGGAGAGCATGATGAGCAGGGCATGAC
AGTAGTGGCAGAGGGTGGTATAAAGGAATTGAGGCAAGAACAAGGTGCGA
AGGGAATTGAAGCTACGGTTCCTCGCTCCCAGCCGAGTCCTAcgcatccc
ccttcctctgcgccAGCTATCCCAGCCGGGCATGTGAAATTTCAATTCTA
CCAGACCACATCCTATGTGACAGTCACCATTCTCTATAAAGGCctcagag
aggaggacgctAACGTGTCTGTCCAGCCACGCCACCTGAAAGTCTCAGTG
GGCGCAGACGGAGACGCCTTGTTCGACCGAGCTCTTTTTGAGACCGTGGT
TCCCGAGGAGAGTACCAGCAAAATTTTCGCGACCAAAGTTGAAGTCAAGC
TAAGGAAAGCAATGGAAGGCCTGACGTGGCCTGAGCTGTGTGCTCTCTCG
CCAAGTGCAGCCGCCTCGGTCCACACGGTCTCCGCGCCAACCCCCGACTC
TCACGCGACCGCTCTCCCGTCTTTGGCACAAGGCCCTGCCACTGCACCGA
GCAGCAAGCCCTTGCGGCCATATGCGAGCACCAAAGATTGGGGTGCAGTC
GAGAAAGAGATCTCGAAGGAATTGGAGAGCGAGAAgccggagggggacga
ggcctTGAACACGCTCTTCCGGGACATCTACGCCAAGGGCTCCGACGAGA
CACGGCGTGCGATGGTCAAGTCTTTCCAGACGTCGGGAGGGACGGTGCTG
TCCACCaattgggaggaggtggggaagaaagactacgagaaggaggagga
gcgcaagGCCCCGGAAGGCATGGAGTGGCGGAAGTGGGGGGTGTAG

Synonyms

Publications