rna2591, rna2591 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2591
Unique Name	rna2591
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2173
Alignment location	CM002459.1:743336..745210 -

Link to JBrowse

Properties


Property Name	Value
Product	protein-er retention protein
Orig transcript id	gnl\|cribi\|Naga_100120g13.6951.mrna
Orig protein id	gnl\|cribi\|Naga_100120g13.6951
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:743336..745210 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g13	gene2478	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28090.1	cds2583	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2591	rna2591-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:743336..745210-
coding sequence from alignment at CM002459.1:743336..745210-

mRNA sequence

>rna2591 ID=rna2591|Name=rna2591|organism=Nannochloropsis gaditana|type=mRNA|length=2173bp
TCAGGAACTTTTCGAGCCGGCGTTTCGCCTTCCTTGGGATTTACGACCAG
TCGCGGTGAATTGTCCAGCTTTCATGTGCCTACTGAATCACTCTGTTGAT
TAGACTGTGGCATTTGGGCGCCAGCTGAACGCATGCCCACGCCAACGGTA
CCAGGAAAATCGTATTCATAGGAATCGGGTCAGTCATAAGTCCGAGTGGC
TTCGAGATTCAGCCTTGATTCCTCTCCTCAGGGCATGCAAATTGCTTCCT
TCTATAATTTTCGCCAGTGAAGATCACACACATGTACTCTTGAAAAATGT
GTAACCATCTTTGGTGGCCTGATTGACCTACATATCATTACTGAAGTTGA
TTTCTTTTTCTCTTCATGTTCCGGCGTCTAGGAGGAGAACCTGGAAGGCG
CGTCAGCAAGCAATGCTCATGTTGGTTCGTCTCTTGCTTGTTGTGGTAGC
ATGCGGTGTGCTTGTCGTATCCCGAGTGCTCATCGTGCAAGGAGATACGA
AGGCAAAGGCACCAAGCACGGCGGGTAGCTATACGCATTTGCCTTTGACA
TTTGGTGGGTTGGACACGGGTGGCAGCAGTGAGGAAGCGGATAGACGTCA
CGATCTGGTCCCCGGATTGGGAAGCAGTAAAGTAAGCTATCGTCGGCTTC
GAAAAGCCACTCGAGCAGCGGCCGCGGACTCGGATTTCAGTTACGAGCGA
AAAAGTTCCCAGTCGGATGGTGTCACTCGCCGACTGAGGCCTTTCCAAGC
CGTCCGGACGACGTTACAGTCGCAAGTACGACGCGTCAGGAACACCCTGC
AATCAACCCGGGTCTCGTCTGCGGTGGCGGGACTTCTAAGTCGCTTTCCT
CCGCGTCTACAGCGCCGGCGTACGTCTGAGAGTAGGCCTGCGGGACATCT
AAGTTCGTTTGCCGAGCGCTTATTGCGACAACTTCGGCGGCAGCAGGCCC
ACCTGGTCCAGGATGCTGAGGCGATGTTGAATGGTGACGCTGCTGCCTCA
TTGGAAGGAGTGGACCCACGGTACTTATCCCTCCTTCAGTCGCTCGAGGA
AGAAGGCCATCAGGCGTTGGGAGATGAGGGCGGGGGCTGGCACCCTGTGT
CGGACAAAGAGGACACGAAAATTTGGAGGCGGAATCTGGCGGAAGACGCG
TATGGGCGGGAGTATCCCTGCCTGAAGTTGTCGACAGTGCTGCACGCCTC
CCCTGAGGCTGTAATGGACCTGCTGGTGGACTCGGAACGCGTGGGCGAGT
ACAACAAGTACAGCAAAGGCCGGGACGACGTGGCGCGTGTCGGGCCCCAC
ACCAAGATAGTCTGGAATAGAACCCTACCCCCGCTGCAGAAGAAGGCGCA
CGAGTTTTGCACGATCATGCACGTCGTTCGGCGCCCTGACGGCTCTCAAG
TGATGCTGACCAAGTTCACAGACCATCCGGAAGTGCCGCGCTCCTCCCGC
TTTGCGCGCTCCGAGATCATTTTGGGCGTCACAGAAGTACGTCCCCACCC
GACAGACCCTAACCGCGCTCATCTCACCACCATTAGCCACGTTAAGTCGG
CTGGGATTCCGCCTTTCATTGCGGAAAAATTCAGTGTGCGGGGCGTGGTG
GATTTCGCTGAGAGCCTGCGGAAAGCCCTGCATTTAGAGCGGAAAGGCCC
CGTGCAGGAGGCGAAGGCGGAAAATTTTCAAAAACGAAGGCAAGAGGAGA
AGCAGGATCAACTTCAGGAGAGCTTCGATGTAGAGGCGGTGGTAGCCTGA
GAGCGACGAGCCATGTGGAAATAGACGGAGACGGCGGGCCGAGGGGGGGG
GCTGCCCGAATGTTGTAGAGTGCAGTGGTGGGTGTGCCGTGTTTGACCTC
GCCACACCCAGCCATGGCGAGTGATTCGACAGCATTGACGGGGGCAAAGG
GGCGAGCAGTGCGGGGGCGTTGTCCTTTACTGCCAGACACATAAAAAGTT
TGTTCATATGCATACATGAGAGGACTAAGAGAGGCCAGCGGGGTCTGAAG
GCACATCTTTCCAAGGGGTATCCAAACCTTGAGTGCACTAGGACACAAAG
CAAGGGAAGACCCGCGGCTAAAACGACGACAGCACTGTAATGTAAAGTAT
AAGGATGATTGGGGAGGGGCATCTTCTCCAGTCGATGCCACTTGAAAGAA
CAATGCGAGCTTTTGCCGTACCA

protein sequence of rna2591

>rna2591-protein ID=rna2591-protein|Name=rna2591|organism=Nannochloropsis gaditana|type=polypeptide|length=488bp
MEVGGGETVESVLKRLDQKSEYAVVRGTCVGILFISLWALNLHVFKVAHI
DISCIYPAKLVSAGGYGGSGKSDHGSGSGGSSKDVGRTTGSRRSPSAVLQ
KQQQQAQQPVCHPRKVINLVTVLVLAMVFCILIMSELLGQPYQHAPFIFY
FLLLAAVIYPSDTTLMFRELALLFGRVLWLVVLPGTEIHFLEVLVGDILT
SLSKVFFEVGLTCVATLLSLSPGLFRIVSPDIFPTLLASTPFILRIRQCV
VQRRGTASGKARFLVSLNILKYCSSIPGLWLPLLLAPHYSTYQIERVLLV
VLLVNSLYSFLWDVIMDWGLGHVKLTGAPKKGGGGAVRLRHWGLRPTLLF
GSAGSYYAAIGLDLVLRLVWVLKYVNFDHRLSYDKFMLLIECLEVLRRGI
WSIYRIEWECLSINGGRKGGGLLGRVETPMGGGIGMVAIGSKRAGGNGAG
NTLARDMEGEVDLERSVGIETESGGGEGTDVTTVLLSR

mRNA from alignment at CM002459.1:743336..745210-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2591 ID=rna2591|Name=rna2591|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002459.1:743336..745210- (Nannochloropsis gaditana)
TAGCTCACATTTGCTACTGCTCCTCTTTTCCACGAACAGGCTGCTAAGGA
CCGGTCAAAGCCGAAAGCCAGGGCCAGGTCCATATAGCGCCCCGTTCGCG
CAATCAAGCAGCACAACGAAGGCTTGCTCTTTCAGTAAACTTTCGTTGTG
CCCACTGCAGTCCATTCGCAAGACTTTCGGTTGAGAATAAATTATGGAGG
TTGGTGGGGGCGAGACCGTGGAAAGTGTGCTGAAGCGATTGGATCAGAAA
AGCGAGTACGCGGTGGTCCGAGGTACATGTGTTGGCATCCTGTTCATCTC
GCTCTGGGCCTTGAATCTGCATGTCTTTAAAGTTGCCCACATCGATATAT
CGTGCATCTACCCCGCTAAGCTCGTCAGCGCGGGGGGGTATGGTGGGAGC
GGGAAAAGCGACCATGGAAGCGGCTCGGGGGGCAGCAGCAAAGACGTCGG
CAGGACTACAGGCAGCAGACGGTCGCCCTCGGCCGTGCTCCAGAAGCAGC
AGCAACAAGCCCAGCAGCCTGTGTGTCACCCGCGCAAGGTGATAAATTTG
GTGACTGTGTTGGTGCTCGCCATGGTGTTCTGCATCCTCATCATGTCCGA
GCTCCTGGGGCAGCCCTACCAGCACGCCCCTTTCATCTTCTACTTTCTGC
TCTTGGCCGCAGTCATCTACCCATCGGACACCACTTTGATGTTCAGAGAG
CTTGCCCTCTTATTTGGGCGGGTCCTTTGGCTGGTGGTGCTCCCGGGGAC
CGAGATTCACTTCCTGGAAGTGTTGGTCGGCGACATCCTAACCAGCCTGT
CCAAGGTTTTCTTCGAGGTCGGCCTCACCTGCGTGGCCACACTCCTTTCT
TTGTCTCCGGGGCTCTTCCGCATTGTCTCCCCCGACATCTTTCCCACCCT
TCTCGCCTCCACGCCATTCATCCTGCGCATTCGCCAGTGCGTGGTACAGC
GCCGCGGAACCGCCTCTGGGAAAGCCCGCTTCCTCGTCTCCCTGAACATC
CTCAAGTACTGCTCCTCCATCCCCGGCCTGTGGCTGCCGCTTCTCCTGGC
CCCTCACTACTCCACCTACCAGATCGAGCGCGTGCTGCTGGTCGTCCTTC
TCGTCAACTCCCTCTACTCCTTCCTGTGGGACGTGATCATGGACTGGGGC
CTCGGCCACGTAAAGCTGACCGGCGCGCCCAAGAAAGGCGGCGGGGGGGC
CGTGCGGCTACGACACTGGGGCCTCCGACCCACCCTCTTGTTCGGATCGG
CCGGGTCCTACTACGCGGCCATCGGGCTGGATTTGGTCCTTCGGCTGGTC
TGGGTCTTAAAGTACGTCAACTTCGACCACCGGCTCTCGTATGACAAATT
CATGCTCCTGATAGAATGTCTGGAGGTGCTGCGGCGTGGCATATGGTCGA
TTTACAGGATTGAGTGGGAGTGTCTGAGCATCAACGGGGGTAGAAAGGGG
GGTGGATTGCTCGGGAGGGTGGAGACGCCGATGGGAGGGGGGATCGGCAT
GGTTGCGATAGGAAGCAAACGGGCAGGAGGGAATGGGGCGGGGAATACGC
TAGCGCGAGATATGGAGGGCGAGGTAGATTTGGAGCGCTCTGTGGGGATC
GAGACTGAAAGTGGGGGCGGCGAGGGCACCGATGTGACGACCGTACTCTT
GTCGCGCTGATCGCAGTCATGCCGTCGGCGAAAAAAAGGGATTCGCAACG
GCTCGCTCATGGCGTGCACCTTTCCGTAAGTGTAAGTATATTTTGAGAAG
GTATATTTTTTAATCTTCACGCCTGAGAACTTGTTGGCTTCTTGAGATAG
AGCCAGCTGAAAGTATAAGTACATTTGTCTGCCCGTCAGGTAAAATAATT
GAAATGACAGTCAACCCTTGCGCAA

Coding sequence (CDS) from alignment at CM002459.1:743336..745210-

>rna2591 ID=rna2591|Name=rna2591|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002459.1:743336..745210- (Nannochloropsis gaditana)
ATGGAGGTTGGTGGGGGCGAGACCGTGGAAAGTGTGCTGAAGCGATTGGA
TCAGAAAAGCGAGTACGCGGTGGTCCGAGGTACATGTGTTGGCATCCTGT
TCATCTCGCTCTGGGCCTTGAATCTGCATGTCTTTAAAGTTGCCCACATC
GATATATCGTGCATCTACCCCGCTAAGCTCGTCAGCGCGGGGGGGTATGG
TGGGAGCGGGAAAAGCGACCATGGAAGCGGCTCGGGGGGCAGCAGCAAAG
ACGTCGGCAGGACTACAGGCAGCAGACGGTCGCCCTCGGCCGTGCTCCAG
AAGCAGCAGCAACAAGCCCAGCAGCCTGTGTGTCACCCGCGCAAGGTGAT
AAATTTGGTGACTGTGTTGGTGCTCGCCATGGTGTTCTGCATCCTCATCA
TGTCCGAGCTCCTGGGGCAGCCCTACCAGCACGCCCCTTTCATCTTCTAC
TTTCTGCTCTTGGCCGCAGTCATCTACCCATCGGACACCACTTTGATGTT
CAGAGAGCTTGCCCTCTTATTTGGGCGGGTCCTTTGGCTGGTGGTGCTCC
CGGGGACCGAGATTCACTTCCTGGAAGTGTTGGTCGGCGACATCCTAACC
AGCCTGTCCAAGGTTTTCTTCGAGGTCGGCCTCACCTGCGTGGCCACACT
CCTTTCTTTGTCTCCGGGGCTCTTCCGCATTGTCTCCCCCGACATCTTTC
CCACCCTTCTCGCCTCCACGCCATTCATCCTGCGCATTCGCCAGTGCGTG
GTACAGCGCCGCGGAACCGCCTCTGGGAAAGCCCGCTTCCTCGTCTCCCT
GAACATCCTCAAGTACTGCTCCTCCATCCCCGGCCTGTGGCTGCCGCTTC
TCCTGGCCCCTCACTACTCCACCTACCAGATCGAGCGCGTGCTGCTGGTC
GTCCTTCTCGTCAACTCCCTCTACTCCTTCCTGTGGGACGTGATCATGGA
CTGGGGCCTCGGCCACGTAAAGCTGACCGGCGCGCCCAAGAAAGGCGGCG
GGGGGGCCGTGCGGCTACGACACTGGGGCCTCCGACCCACCCTCTTGTTC
GGATCGGCCGGGTCCTACTACGCGGCCATCGGGCTGGATTTGGTCCTTCG
GCTGGTCTGGGTCTTAAAGTACGTCAACTTCGACCACCGGCTCTCGTATG
ACAAATTCATGCTCCTGATAGAATGTCTGGAGGTGCTGCGGCGTGGCATA
TGGTCGATTTACAGGATTGAGTGGGAGTGTCTGAGCATCAACGGGGGTAG
AAAGGGGGGTGGATTGCTCGGGAGGGTGGAGACGCCGATGGGAGGGGGGA
TCGGCATGGTTGCGATAGGAAGCAAACGGGCAGGAGGGAATGGGGCGGGG
AATACGCTAGCGCGAGATATGGAGGGCGAGGTAGATTTGGAGCGCTCTGT
GGGGATCGAGACTGAAAGTGGGGGCGGCGAGGGCACCGATGTGACGACCG
TACTCTTGTCGCGCTGA

Synonyms

Publications